mRNA_Ecto-sp9_F_contig9107.17297.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9107.17297.1
Unique NamemRNA_Ecto-sp9_F_contig9107.17297.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9107.17297.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9107contigEcto-sp9_F_contig9107:4184..4508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size325
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.1523597-UTR-Ecto-sp9_F_contig9107:4183..41841622930981.1523597-UTR-Ecto-sp9_F_contig9107:4183..4184Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9107 4184..4184 +
1692278978.8354018-UTR-Ecto-sp9_F_contig9107:4183..41841692278978.8354018-UTR-Ecto-sp9_F_contig9107:4183..4184Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9107 4184..4184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.1728215-CDS-Ecto-sp9_F_contig9107:4184..45081622930981.1728215-CDS-Ecto-sp9_F_contig9107:4184..4508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9107 4185..4508 +
1692278978.8442519-CDS-Ecto-sp9_F_contig9107:4184..45081692278978.8442519-CDS-Ecto-sp9_F_contig9107:4184..4508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9107 4185..4508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9107.17297.1prot_Ecto-sp9_F_contig9107.17297.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9107 4185..4508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9107.17297.1

>prot_Ecto-sp9_F_contig9107.17297.1 ID=prot_Ecto-sp9_F_contig9107.17297.1|Name=mRNA_Ecto-sp9_F_contig9107.17297.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=108bp
MSPGTPSCGAGKQSHARKWCLPSRHSWYLSEAGKRERETLRCCTWYSQGA
SYRNLCVKQPIRPLSQTLRLHYCWRTPKCTTTRAVDSTRKKEGKAEDYAR
RHRTDTNI
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mRNA from alignment at Ecto-sp9_F_contig9107:4184..4508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9107.17297.1 ID=mRNA_Ecto-sp9_F_contig9107.17297.1|Name=mRNA_Ecto-sp9_F_contig9107.17297.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=325bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9107:4184..4508+ (Ectocarpus species9 EcSCA_722f female)
CATGTCCCCGGGCACTCCCTCATGTGGTGCAGGCAAACAATCTCACGCCC
GAAAATGGTGTTTGCCCTCACGCCACAGTTGGTATTTGTCCGAAGCCGGG
AAGAGAGAGAGAGAAACACTCCGTTGTTGTACTTGGTACTCACAAGGTGC
CTCCTACCGTAACCTGTGTGTGAAACAACCGATCCGTCCGCTCTCCCAGA
CCCTTCGCCTACACTATTGCTGGCGTACGCCAAAATGCACAACCACAAGA
GCTGTCGATAGTACAAGAAAAAAGGAGGGAAAAGCGGAAGACTATGCACG
CAGGCATAGAACGGACACGAACATA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9107:4184..4508+

>mRNA_Ecto-sp9_F_contig9107.17297.1 ID=mRNA_Ecto-sp9_F_contig9107.17297.1|Name=mRNA_Ecto-sp9_F_contig9107.17297.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9107:4184..4508+ (Ectocarpus species9 EcSCA_722f female)
ATGTCCCCGGGCACTCCCTCATGTGGTGCAGGCAAACAATCTCACGCCCG
AAAATGGTGTTTGCCCTCACGCCACAGTTGGTATTTGTCCGAAGCCGGGA
AGAGAGAGAGAGAAACACTCCGTTGTTGTACTTGGTACTCACAAGGTGCC
TCCTACCGTAACCTGTGTGTGAAACAACCGATCCGTCCGCTCTCCCAGAC
CCTTCGCCTACACTATTGCTGGCGTACGCCAAAATGCACAACCACAAGAG
CTGTCGATAGTACAAGAAAAAAGGAGGGAAAAGCGGAAGACTATGCACGC
AGGCATAGAACGGACACGAACATAATGTCCCCGGGCACTCCCTCATGTGG
TGCAGGCAAACAATCTCACGCCCGAAAATGGTGTTTGCCCTCACGCCACA
GTTGGTATTTGTCCGAAGCCGGGAAGAGAGAGAGAGAAACACTCCGTTGT
TGTACTTGGTACTCACAAGGTGCCTCCTACCGTAACCTGTGTGTGAAACA
ACCGATCCGTCCGCTCTCCCAGACCCTTCGCCTACACTATTGCTGGCGTA
CGCCAAAATGCACAACCACAAGAGCTGTCGATAGTACAAGAAAAAAGGAG
GGAAAAGCGGAAGACTATGCACGCAGGCATAGAACGGACACGAACATA
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