mRNA_Ecto-sp9_F_contig9106.17296.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9106.17296.1
Unique NamemRNA_Ecto-sp9_F_contig9106.17296.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9106.17296.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9106contigEcto-sp9_F_contig9106:4347..4924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size548
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9106.17296.1prot_Ecto-sp9_F_contig9106.17296.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9106 4418..4729 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.9246078-UTR-Ecto-sp9_F_contig9106:4346..44171622930980.9246078-UTR-Ecto-sp9_F_contig9106:4346..4417Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9106 4347..4417 +
1692278978.7178004-UTR-Ecto-sp9_F_contig9106:4346..44171692278978.7178004-UTR-Ecto-sp9_F_contig9106:4346..4417Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9106 4347..4417 +
1622930980.9773831-UTR-Ecto-sp9_F_contig9106:4729..49241622930980.9773831-UTR-Ecto-sp9_F_contig9106:4729..4924Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9106 4730..4924 +
1692278978.7636693-UTR-Ecto-sp9_F_contig9106:4729..49241692278978.7636693-UTR-Ecto-sp9_F_contig9106:4729..4924Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9106 4730..4924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.9429-CDS-Ecto-sp9_F_contig9106:4417..45221622930980.9429-CDS-Ecto-sp9_F_contig9106:4417..4522Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9106 4418..4522 +
1692278978.7296975-CDS-Ecto-sp9_F_contig9106:4417..45221692278978.7296975-CDS-Ecto-sp9_F_contig9106:4417..4522Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9106 4418..4522 +
1622930980.961403-CDS-Ecto-sp9_F_contig9106:4552..47291622930980.961403-CDS-Ecto-sp9_F_contig9106:4552..4729Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9106 4553..4729 +
1692278978.7528636-CDS-Ecto-sp9_F_contig9106:4552..47291692278978.7528636-CDS-Ecto-sp9_F_contig9106:4552..4729Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9106 4553..4729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9106.17296.1

>prot_Ecto-sp9_F_contig9106.17296.1 ID=prot_Ecto-sp9_F_contig9106.17296.1|Name=mRNA_Ecto-sp9_F_contig9106.17296.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=94bp
MDTRHLRILIRLAREPPECCSNSSAGLIATSCVTDLSTSLSVCAVRLRAM
HGRVERLAVMSLVDMRRNIGVASSQHAVGHWSDAHQELQRTVL*
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mRNA from alignment at Ecto-sp9_F_contig9106:4347..4924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9106.17296.1 ID=mRNA_Ecto-sp9_F_contig9106.17296.1|Name=mRNA_Ecto-sp9_F_contig9106.17296.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=578bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9106:4347..4924+ (Ectocarpus species9 EcSCA_722f female)
CTTTGGTTGCGCGGATTTTGCCGCACTAGACTTGTGCTGTGGAATATGGT
GATCGAACATCTCCCTCGCCAATGGACACGAGACATCTCCGTATTCTTAT
TCGTCTTGCACGTGAACCGCCAGAGTGCTGCTCCAACAGCAGCGCAGGCT
TGATCGCCACCTCCTGCGTAACAGATGCAACGGGAGTCCAGCAGCGTTGT
TTGTAGCTTTCCACAAGTCTCTCTGTCTGTGCGGTTCGTTTAAGAGCAAT
GCACGGGAGGGTTGAAAGGTTGGCGGTGATGAGTCTCGTTGACATGCGGA
GAAACATTGGCGTAGCATCCAGTCAGCATGCGGTTGGGCATTGGAGTGAT
GCTCACCAAGAACTGCAGAGGACTGTTCTGTGAGGCCCTATGCATAGATC
GGGACTCTTAGTTAGTTAGGGAGGCAAATTGCCGCAGAGTAGGTATCGAC
TGCAGAGTAAGTACGTGAGGGAAACATGAAAACAAATGAAGCAAACTGAC
CCAGTAGAGAACTACAGGGCATGTGTTGTAAAATGTAAGTTACCTATACG
GATGTTTTTGTACTTCGCACCAGCTGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9106:4347..4924+

>mRNA_Ecto-sp9_F_contig9106.17296.1 ID=mRNA_Ecto-sp9_F_contig9106.17296.1|Name=mRNA_Ecto-sp9_F_contig9106.17296.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9106:4347..4924+ (Ectocarpus species9 EcSCA_722f female)
ATGGACACGAGACATCTCCGTATTCTTATTCGTCTTGCACGTGAACCGCC
AGAGTGCTGCTCCAACAGCAGCGCAGGCTTGATCGCCACCTCCTGCGTAA
CAGATATGGACACGAGACATCTCCGTATTCTTATTCGTCTTGCACGTGAA
CCGCCAGAGTGCTGCTCCAACAGCAGCGCAGGCTTGATCGCCACCTCCTG
CGTAACAGATCTTTCCACAAGTCTCTCTGTCTGTGCGGTTCGTTTAAGAG
CAATGCACGGGAGGGTTGAAAGGTTGGCGGTGATGAGTCTCGTTGACATG
CGGAGAAACATTGGCGTAGCATCCAGTCAGCATGCGGTTGGGCATTGGAG
TGATGCTCACCAAGAACTGCAGAGGACTGTTCTGTGACTTTCCACAAGTC
TCTCTGTCTGTGCGGTTCGTTTAAGAGCAATGCACGGGAGGGTTGAAAGG
TTGGCGGTGATGAGTCTCGTTGACATGCGGAGAAACATTGGCGTAGCATC
CAGTCAGCATGCGGTTGGGCATTGGAGTGATGCTCACCAAGAACTGCAGA
GGACTGTTCTGTGA
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