mRNA_Ecto-sp9_F_contig9105.17294.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9105.17294.1
Unique NamemRNA_Ecto-sp9_F_contig9105.17294.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9105.17294.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE7_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 3.010e-46
Identity = 94/128 (73.44%), Postives = 97/128 (75.78%), Query Frame = 3 
Query:  201 RVHRSANPRFSVEHQQNGKVLCETHLQ*MVDLTETVGRYRKRTKVSKKKPLPPSSPVGVGGGGVKREWDDAETPATFVWSSSAMGRGGTAGSCP*DASRATAVEPFTGLGQKRRKVLTGAAAFGQITG 584
            R+  S   RF  +H  N           MVDLTETVGRYRKRTK  KKKPLPP+SPV V GGGVKREWDDA TPAT V SSSAMGRGG AGSCP D  RATAVEPFTGLGQKRRKVLTGAAAFGQITG
Sbjct:  554 RLSTSETARFCAKHASNE----------MVDLTETVGRYRKRTKGHKKKPLPPASPVEVEGGGVKREWDDAGTPATSVRSSSAMGRGGMAGSCPGDVFRATAVEPFTGLGQKRRKVLTGAAAFGQITG 671
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9105.17294.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.010e-4673.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9105contigEcto-sp9_F_contig9105:3332..3930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_004140.1
Exons1
Model size599
Cds size309
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.840597-UTR-Ecto-sp9_F_contig9105:3331..36211622930980.840597-UTR-Ecto-sp9_F_contig9105:3331..3621Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9105 3332..3621 -
1692278978.6912277-UTR-Ecto-sp9_F_contig9105:3331..36211692278978.6912277-UTR-Ecto-sp9_F_contig9105:3331..3621Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9105 3332..3621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.860585-CDS-Ecto-sp9_F_contig9105:3621..39301622930980.860585-CDS-Ecto-sp9_F_contig9105:3621..3930Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9105 3622..3930 -
1692278978.7039187-CDS-Ecto-sp9_F_contig9105:3621..39301692278978.7039187-CDS-Ecto-sp9_F_contig9105:3621..3930Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9105 3622..3930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9105.17294.1prot_Ecto-sp9_F_contig9105.17294.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9105 3622..3930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9105.17294.1

>prot_Ecto-sp9_F_contig9105.17294.1 ID=prot_Ecto-sp9_F_contig9105.17294.1|Name=mRNA_Ecto-sp9_F_contig9105.17294.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
MCRHIGGSVAASYGMEGSKQADFGSERYKNRLVATFAGTRKRQTRTRRST
QKEMVPDVGSRKKCTSRGCTGVPTHGFRLSTSKTARFCAKRTSNEWSTSL
KR*
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mRNA from alignment at Ecto-sp9_F_contig9105:3332..3930-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9105.17294.1 ID=mRNA_Ecto-sp9_F_contig9105.17294.1|Name=mRNA_Ecto-sp9_F_contig9105.17294.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=599bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9105:3332..3930- (Ectocarpus species9 EcSCA_722f female)
ATGTGCCGTCACATAGGTGGCAGCGTGGCTGCGTCGTACGGCATGGAAGG
CAGCAAGCAGGCAGATTTTGGCTCGGAGCGTTACAAGAACCGATTGGTGG
CCACCTTCGCTGGCACCAGGAAGAGACAGACACGGACTCGACGCTCCACT
CAGAAGGAGATGGTACCTGATGTGGGCAGCAGGAAAAAGTGTACCAGCCG
AGGGTGCACCGGAGTGCCAACCCACGGTTTTCGGTTGAGCACCAGCAAAA
CGGCAAGGTTTTGTGCGAAACGCACCTCCAATGAATGGTCGACCTCACTG
AAACGGTAGGCCGCTACCGCAAACGCACCAAGGTCTCCAAGAAAAAACCC
TTACCGCCATCATCACCAGTCGGGGTAGGAGGGGGTGGTGTGAAGAGAGA
ATGGGATGACGCTGAGACACCTGCGACTTTCGTATGGAGTAGCAGTGCGA
TGGGAAGAGGCGGAACGGCAGGTTCATGTCCCTAGGACGCATCTAGAGCT
ACGGCAGTGGAACCCTTCACGGGGCTCGGGCAGAAGCGAAGGAAGGTGCT
AACCGGTGCTGCTGCCTTTGGCCAAATTACTGGGTGGGACTCGGACGGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9105:3332..3930-

>mRNA_Ecto-sp9_F_contig9105.17294.1 ID=mRNA_Ecto-sp9_F_contig9105.17294.1|Name=mRNA_Ecto-sp9_F_contig9105.17294.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9105:3332..3930- (Ectocarpus species9 EcSCA_722f female)
ATGTGCCGTCACATAGGTGGCAGCGTGGCTGCGTCGTACGGCATGGAAGG
CAGCAAGCAGGCAGATTTTGGCTCGGAGCGTTACAAGAACCGATTGGTGG
CCACCTTCGCTGGCACCAGGAAGAGACAGACACGGACTCGACGCTCCACT
CAGAAGGAGATGGTACCTGATGTGGGCAGCAGGAAAAAGTGTACCAGCCG
AGGGTGCACCGGAGTGCCAACCCACGGTTTTCGGTTGAGCACCAGCAAAA
CGGCAAGGTTTTGTGCGAAACGCACCTCCAATGAATGGTCGACCTCACTG
AAACGGTAGATGTGCCGTCACATAGGTGGCAGCGTGGCTGCGTCGTACGG
CATGGAAGGCAGCAAGCAGGCAGATTTTGGCTCGGAGCGTTACAAGAACC
GATTGGTGGCCACCTTCGCTGGCACCAGGAAGAGACAGACACGGACTCGA
CGCTCCACTCAGAAGGAGATGGTACCTGATGTGGGCAGCAGGAAAAAGTG
TACCAGCCGAGGGTGCACCGGAGTGCCAACCCACGGTTTTCGGTTGAGCA
CCAGCAAAACGGCAAGGTTTTGTGCGAAACGCACCTCCAATGAATGGTCG
ACCTCACTGAAACGGTAG
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