mRNA_Ecto-sp9_F_contig9105.17293.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9105.17293.1
Unique NamemRNA_Ecto-sp9_F_contig9105.17293.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9105.17293.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.940e-16
Identity = 67/149 (44.97%), Postives = 78/149 (52.35%), Query Frame = 3 
Query:  252 FPGLDEEASGESTLALLRHKRLACLL*LCHKRDEQEVSQNGMESAKGSADAATPRHAKGLED--RS*TTNKRS*SIRWLDRYRTSPEEVDAVLWAVAITRCGLDMCGGPTYARGRR------VFNQVLPMT*TRGAQRMPTLVQVWTHL 674
             P LDE   GEST+ L R  R  CLL L +K+  Q +S+   +  +    A TPRHA G+       T  KR    RWLD Y TSPE VDA+L AV+IT C LDMCGGPT A   R      VF    P    R A  M TL +  THL
Sbjct:   22 LPALDEGGLGESTVTLCR--RSGCLLQL-YKKHNQRMSKEQSKDRRARKAAQTPRHATGMWTLPEPQTHLKR----RWLDWYCTSPEAVDALLGAVSITGCNLDMCGGPTDAVATRLRPTCEVFTNDTP----RHATGMWTLPEPQTHL 159
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BLAST of mRNA_Ecto-sp9_F_contig9105.17293.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.230e-16
Identity = 57/117 (48.72%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:  252 FPGLDEEASGESTLALLRHKRLACLL*LCHKRDEQEVSQNGMESAKGSADAATPRHAKGL--EDRS*TTNKRS*SIRWLDRYRTSPEEVDAVLWAVAITRCGLDMCGGPTYARGRRV 596
            FP LDE   G STL L   KR  CLL L +K+ EQ +S+   +  +    A TPRHA G+       T  KR    RWLDRY TSPE V+A+L AV+IT C LD+CGGPT A   R+
Sbjct:   22 FPALDEGGLGASTLTLC--KRSGCLLQL-YKKHEQRMSKERSKDRRARKAAQTPRHATGMWTVPEPQTHLKR----RWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRL 131
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BLAST of mRNA_Ecto-sp9_F_contig9105.17293.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.300e-15
Identity = 58/117 (49.57%), Postives = 67/117 (57.26%), Query Frame = 3 
Query:  252 FPGLDEEASGESTLALLRHKRLACLL*LCHKRDEQEVSQNGMESAKGSADAATPRHAKGL--EDRS*TTNKRS*SIRWLDRYRTSPEEVDAVLWAVAITRCGLDMCGGPTYARGRRV 596
            F  L+E   G  TL L R  R ACLL L +K+ EQ  S++  +  +    A TPRHAKG        T  KR    RWLDRY TSPE VDA+L AV IT C LDMCGGPT A   R+
Sbjct:   49 FTALNEGNLGVITLVLCR--RPACLLQL-YKKHEQRASKDRSKDRRARKAARTPRHAKGWVGAPEPQTHLKR----RWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRL 158
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BLAST of mRNA_Ecto-sp9_F_contig9105.17293.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR5_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.530e-9
Identity = 48/112 (42.86%), Postives = 56/112 (50.00%), Query Frame = 3 
Query:  252 FPGLDEEASGESTLALLRHKRLACLL*LCHKRDEQEVSQNGMESAKGSADAATPRHAK--GLEDRS*TTNKRS*SIRWLDRYRTSPEEVDAVLWAVAITRCGLDMCGGPTYA 581
            FPG    A+G +  AL   KR  CLL L  K +     +     AK      TPRH++         T +KR    R  DRY TSPE VDA+  AVAIT C LDMCGGP  A
Sbjct:   66 FPGFQSGAAGPNLFALC--KRSGCLLELYKKHEWARSRERVARKAK-----QTPRHSRTWSAAPEPVTHHKR----RRFDRYCTSPEAVDALRDAVAITGCVLDMCGGPDDA 166
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BLAST of mRNA_Ecto-sp9_F_contig9105.17293.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.260e-8
Identity = 37/65 (56.92%), Postives = 41/65 (63.08%), Query Frame = 3 
Query:  402 AATPRHAKGLEDRS*TTNKRS*SIRWLDRYRTSPEEVDAVLWAVAITRCGLDMCGGPTYARGRRV 596
            A TPRHAKG   R+    +     RWLDRY TSPE +DA L AV IT C LDMCGGPT A   R+
Sbjct:    3 ARTPRHAKG--QRTAPEPQTHLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRL 65
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9105.17293.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.560e-8
Identity = 29/41 (70.73%), Postives = 31/41 (75.61%), Query Frame = 3 
Query:  474 RWLDRYRTSPEEVDAVLWAVAITRCGLDMCGGPTYARGRRV 596
            RWLDRY TSPE VDA+L AV IT C LDMCGGPT A   R+
Sbjct:   15 RWLDRYCTSPEAVDALLGAVDITGCVLDMCGGPTDAVATRL 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9105.17293.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized1.940e-1644.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.230e-1648.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.300e-1549.57protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.530e-942.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.260e-856.92protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.560e-870.73protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9105contigEcto-sp9_F_contig9105:250..2307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_004130.1
Exons3
Model size1202
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9105.17293.1prot_Ecto-sp9_F_contig9105.17293.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9105 1231..2030 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.7276936-UTR-Ecto-sp9_F_contig9105:249..3391622930980.7276936-UTR-Ecto-sp9_F_contig9105:249..339Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9105 250..339 +
1692278978.6439111-UTR-Ecto-sp9_F_contig9105:249..3391692278978.6439111-UTR-Ecto-sp9_F_contig9105:249..339Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9105 250..339 +
1622930980.7474158-UTR-Ecto-sp9_F_contig9105:776..12301622930980.7474158-UTR-Ecto-sp9_F_contig9105:776..1230Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9105 777..1230 +
1692278978.65363-UTR-Ecto-sp9_F_contig9105:776..12301692278978.65363-UTR-Ecto-sp9_F_contig9105:776..1230Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9105 777..1230 +
1622930980.7909632-UTR-Ecto-sp9_F_contig9105:2030..23071622930980.7909632-UTR-Ecto-sp9_F_contig9105:2030..2307Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9105 2031..2307 +
1692278978.681707-UTR-Ecto-sp9_F_contig9105:2030..23071692278978.681707-UTR-Ecto-sp9_F_contig9105:2030..2307Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9105 2031..2307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.7620702-CDS-Ecto-sp9_F_contig9105:1230..13161622930980.7620702-CDS-Ecto-sp9_F_contig9105:1230..1316Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9105 1231..1316 +
1692278978.6635952-CDS-Ecto-sp9_F_contig9105:1230..13161692278978.6635952-CDS-Ecto-sp9_F_contig9105:1230..1316Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9105 1231..1316 +
1622930980.7777302-CDS-Ecto-sp9_F_contig9105:1735..20301622930980.7777302-CDS-Ecto-sp9_F_contig9105:1735..2030Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9105 1736..2030 +
1692278978.6723738-CDS-Ecto-sp9_F_contig9105:1735..20301692278978.6723738-CDS-Ecto-sp9_F_contig9105:1735..2030Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9105 1736..2030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9105.17293.1

>prot_Ecto-sp9_F_contig9105.17293.1 ID=prot_Ecto-sp9_F_contig9105.17293.1|Name=mRNA_Ecto-sp9_F_contig9105.17293.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=127bp
MRFGHVRWADLRPWTTRLQSSSADDVNSGRPADANLGPSVDSFGRLAQGA
RRASRLSAATGDSEGARKTETTTRRGVWRHRGSSIYRSNSRLGLQLGRAD
VAEKKRNEMAERVAIYMCMWQNMACT*
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mRNA from alignment at Ecto-sp9_F_contig9105:250..2307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9105.17293.1 ID=mRNA_Ecto-sp9_F_contig9105.17293.1|Name=mRNA_Ecto-sp9_F_contig9105.17293.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2058bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9105:250..2307+ (Ectocarpus species9 EcSCA_722f female)
GTCACATTTTCACACCACGGTTCGCGACGCTCAGGTGAAGGACAGAGGCA
ACACCAGGCGACAAGTTCGATAAAGCCACACAATACTCATGTGAGTAATA
TGAAATTGTAGTGTTTTCCTTGGGTGGGAGAGACTCGAGTCGTTGGCCTG
AAGCACTTTTTTTTGCGGCCTGTTTCCGCCATATGGTTGCGCCGCTCCGC
CGGGAGGCAAACTTTGACGACGTCTTGACCACCCGTACAGCTGGCAGAAT
GGACCAGCACTGGGAGAGTGGAGATATTAATAAGGCATACACCTGAAATA
TCCACTATAGAATCTTGGACCTGTCCTGTGAAAGCCGAGATAGACCTTCG
CGCACATGTTCACCTTAAAACGCGGCGGAACTTCCGCCACACACACGTAC
CACGTCCGAACGTCCGGTCTTGAGTCTTTGCTGTCGCTACATCCGCATAT
ATATGTAATGAAATGATGCGCTGTAGTCCTCACCGCTCTTCAAGCCTCTC
TTGGTTTTATTTACCATTTCTGGACAGGTGTTTTTCTGTGTTTCCTATGT
CGGCGGCCGGAAGCCGCTGTATGGCGTGCCTCCGAGGAGAATCTTCATTT
CTGTCTTCGGACACATAAGGCGTTAAGCGCTATAATAGCAACAAAGTCCA
GGCTTTCGTAGACAAGGTCGGCATCGCAAACAGGTTTGTTTCCTGGCTTG
GACGAGGAGGCTTCAGGCGAGAGCACCCTCGCACTGCTGCGGCACAAACG
TCTGGCTTGCTTGCTATAGCTGTGCCACAAGCGCGACGAGCAAGAGGTGA
GCCAGAACGGAATGGAGAGCGCGAAAGGCAGCGCGGACGCCGCGACCCCG
CGCCACGCCAAGGGTTTGGAGGACCGCTCATGAACCACAAACAAACGCAG
TTGAAGCATCAGGTGGCTTGATAGGTACCGCACGTCGCCTGAAGAGGTGG
ACGCTGTGCTGTGGGCTGTGGCTATCACGAGATGCGGTTTGGACATGTGC
GGTGGGCCGACCTACGCCCGTGGACGACGCGTCTTCAATCAAGTTCTGCC
GATGACGTGAACTCGGGGTAAGGACGTTGTTGAATCGATTTGAAAGTAGC
CCAGCAGGACAATGTCCCTGCACGCATATATATGTTCAAAACACGCAGGT
GGCAGCCAACAGAAGACTTTCTGGCAACAGCAGTTAAGCTACCACATTAT
AGTGCAGATCGTAGATGCTGCTCGGGCCCCACGGGTTGGTTATCAGAGAG
TGTCCTTAAATCGCGCAAGATCACGTGCCCTTTTGACAGGAACGGGCCAT
ACAAGTCACTTGCACGTATAGGGGGCTATCTTCTCCAACATAAATCCGGT
GGGTGTCATTGTTGAACACGAAGATTCTCGCACGTTTCCGCGAAGCCCCG
AGAATGCTCGCGCGTGGTTTTGTTTTCCATGTCATGTGCGCGATCACTGA
AATACTGTAGTTGCTGTTGTTCGCGATGCTACATAGGCGCCCAGCGGATG
CCAACCTTGGTCCAAGTGTGGACTCATTTGGTCGCCTGGCACAAGGAGCA
AGAAGAGCCAGTCGACTAAGTGCGGCTACAGGGGACAGCGAAGGAGCCAG
AAAGACCGAAACGACAACGAGGCGGGGTGTGTGGAGACACAGGGGATCAA
GCATATACAGGTCCAATTCGAGGTTAGGACTTCAGCTGGGGAGAGCAGAT
GTAGCCGAGAAGAAGAGGAACGAGATGGCGGAGCGTGTAGCGATATATAT
GTGTATGTGGCAGAATATGGCGTGCACGTGATGATTTCTGGTGCCATTTT
TGTTTTCTTAGCGGGACAATCCGCGCTTATTCTCTCGTGGTTCTCTAGCG
ATATGAAGGGATTTCATCACTGGGTGCGCATTGCGAAAAAGAAAGAATAT
AAGGTGTACGGGGAGCGCAGTCGAAAGATGGCCGAGTGCAGTATCCTTGA
AGTGAAGGCCATTGCCAGAATCTGGGGCACCACTCTTGCTGTAATTTTGT
GTGTGTGCTCATGCAAGCAGTACCTTGGCAGACAGCTGATATCCAGCAGA
GCACGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9105:250..2307+

>mRNA_Ecto-sp9_F_contig9105.17293.1 ID=mRNA_Ecto-sp9_F_contig9105.17293.1|Name=mRNA_Ecto-sp9_F_contig9105.17293.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9105:250..2307+ (Ectocarpus species9 EcSCA_722f female)
ATGCGGTTTGGACATGTGCGGTGGGCCGACCTACGCCCGTGGACGACGCG
TCTTCAATCAAGTTCTGCCGATGACGTGAACTCGGGATGCGGTTTGGACA
TGTGCGGTGGGCCGACCTACGCCCGTGGACGACGCGTCTTCAATCAAGTT
CTGCCGATGACGTGAACTCGGGGCGCCCAGCGGATGCCAACCTTGGTCCA
AGTGTGGACTCATTTGGTCGCCTGGCACAAGGAGCAAGAAGAGCCAGTCG
ACTAAGTGCGGCTACAGGGGACAGCGAAGGAGCCAGAAAGACCGAAACGA
CAACGAGGCGGGGTGTGTGGAGACACAGGGGATCAAGCATATACAGGTCC
AATTCGAGGTTAGGACTTCAGCTGGGGAGAGCAGATGTAGCCGAGAAGAA
GAGGAACGAGATGGCGGAGCGTGTAGCGATATATATGTGTATGTGGCAGA
ATATGGCGTGCACGTGAGCGCCCAGCGGATGCCAACCTTGGTCCAAGTGT
GGACTCATTTGGTCGCCTGGCACAAGGAGCAAGAAGAGCCAGTCGACTAA
GTGCGGCTACAGGGGACAGCGAAGGAGCCAGAAAGACCGAAACGACAACG
AGGCGGGGTGTGTGGAGACACAGGGGATCAAGCATATACAGGTCCAATTC
GAGGTTAGGACTTCAGCTGGGGAGAGCAGATGTAGCCGAGAAGAAGAGGA
ACGAGATGGCGGAGCGTGTAGCGATATATATGTGTATGTGGCAGAATATG
GCGTGCACGTGA
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