mRNA_Ecto-sp9_F_contig910.17286.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAP1_9PHAE) HSP 1 Score: 361 bits (926), Expect = 1.340e-117 Identity = 321/541 (59.33%), Postives = 331/541 (61.18%), Query Frame = 1
Query: 34 MGPEWGTLLAKRMMLTERRPPKEREAEKVRIALADIPPKLQEVKLKQHKLGGLGPKELSELTRKCHLFGSIDLSGWKGVRLLSFRSVCLAVGGSLQTVDLSRTETTNEMLEVFAARLFCLRTINLASCRQLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEAVAYLGGAIGFGSCCALLQSLSLADCKRMSDVSLRVLAKGCPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAKEASVXXXXXXXXXXXXXXXXXXXXXXXVEVGLAGLHGLIEGVGPSLVQEAKTFFGFIPQRSMIDRRIEESHKAIELAAVRAIQRCWRRYKKRLADALRAAYAQADAAVCTIQAAYYRYHKKLVWWETRLLRKQNKAALEIQRVYRAHSRVRLRVSVLREEKRALLANCSRAVPIQAIFRGFMARRDDNLIGPAIEGMLEDRKQELQHAAAVRVQATVRGWIGLKRCAAWGEVKRQRVRDIDISSGKIQA 1656
MGPEWGTLLAKRMM TERRPPKEREAEKVRIALA+IPP LQEVKLKQHKLGGL PKELSELTRKCHLFGSIDLSGWKGVRLLSFRS+CLAVGGSLQTVDLSRTETTNEML VFAARLFCLRTINL SCRQ+ GV+ +A+GCP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGAKEASVXXXXXXXXXXXXXXXXXXXXXXXVEVGLAGLHGLIEGVGP+LVQEAKTFFGFIPQRSMIDRRIEESHKAIELAAVRAIQ P IE MLEDRKQELQHAA VR+QATVRGWIGLKRCAAWGEVKRQR+RDI+ISSGKIQA
Sbjct: 1 MGPEWGTLLAKRMMSTERRPPKEREAEKVRIALAEIPPTLQEVKLKQHKLGGLDPKELSELTRKCHLFGSIDLSGWKGVRLLSFRSLCLAVGGSLQTVDLSRTETTNEMLGVFAARLFCLRTINLTSCRQVTTKGVQ-----------------------------------------------------------YIARGCPNMSVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------AGAKEASVXXXXXXXXXXXXXXXXXXXXXXXVEVGLAGLHGLIEGVGPALVQEAKTFFGFIPQRSMIDRRIEESHKAIELAAVRAIQ------------------------------------------------------------------------------------------------------------PVIEAMLEDRKQELQHAAVVRIQATVRGWIGLKRCAAWGEVKRQRMRDIEISSGKIQA 348
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Match: Hypothetical (leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX1_ECTSI) HSP 1 Score: 329 bits (844), Expect = 3.670e-96 Identity = 277/414 (66.91%), Postives = 287/414 (69.32%), Query Frame = 1
Query: 421 QLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEAVAYLGGAIGFGSCCALLQSLSLADCKRMSDVSLRVLAKGCPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAKEASVXXXXXXXXXXXXXXXXXXXXXXXVEVGLAGLHGLIEGVGPSLVQEAKTFFGFIPQRSMIDRR-IEESHKAIELAAVRAIQRCWRRYKKRLADALRAAYAQADAAVCTIQAAYYRYHKKLVWWETRLLRKQNKAALEIQRVYRAHSRVRLRVSVLREEKRALLANCSRAVPIQAIFRGFMARRDDNLIGPAIEGMLEDRKQELQHAAAVRVQATVRGWIGLKRCAAWGEVKRQRVRDIDISSGKIQAS 1659
QLNNLGVRALVEYCKSTLTSVDLSDCTGLNDE I G C + L+L C ++ + +L L+K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GLAGLHGLIEGVGPSLVQEAKTFFGFIPQRSMIDRR IEESHKAIELAAV AIQRCWRRYKKRLADALRAAYAQA+AAVCTIQAAYYRYHKKLVWWETRLLRKQNKAALEIQRVYRAH S + R AIEGMLEDRKQELQHAAAVRVQATVRGWIGLKRCAAW EVKRQRVRDIDISSGK+Q S
Sbjct: 3 QLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEVTTKGVQYIARG--CPNMSVLNLYHCGKVKNGALIALSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------GLAGLHGLIEGVGPSLVQEAKTFFGFIPQRSMIDRRRIEESHKAIELAAVLAIQRCWRRYKKRLADALRAAYAQAEAAVCTIQAAYYRYHKKLVWWETRLLRKQNKAALEIQRVYRAHRLTETSAS-----------------------QNTAGRTRQQRWQSAIEGMLEDRKQELQHAAAVRVQATVRGWIGLKRCAAWREVKRQRVRDIDISSGKMQGS 337
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ55_9STRA) HSP 1 Score: 199 bits (507), Expect = 3.240e-51 Identity = 254/557 (45.60%), Postives = 321/557 (57.63%), Query Frame = 1
Query: 1 MELDRDNRRLEMGPEWGTLLAKRMMLTERRPPKEREAEKVRIALADIPPKLQEVKLKQHKLGGLGPKELSELTRKCHLFGSIDLSGWKGVRLLSFRSVCLAVGGSLQTVDLSRTETTNEMLEVFAARLFCLRTINLASCRQLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEAVAYLGGAIGFGSCCALLQSLSLADCKRMSDVSLRVLAKGCPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAKEASVXXXXXXXXXXXXXXXXXXXXXXXVEVGLAGLHGLIEGVGPSLVQEAKTFFGFIPQRSMIDRRIEESHKAIELAAVRAIQRCWRRYKKRLADALRAAYAQADAAVCTIQAAYYRYHKKLVWWETRLLRKQNKAALEIQRVYRAHSRVRLRVSVLREEKRALLAN------CSRAVPIQAIFRGFMARRDDNLIGPAIEGMLEDRKQELQHAAAVRVQATVRGWIGLKRCAAWGEVKRQRVRDIDISSGKIQ 1653
M+LDR+ R GP++G LLAKRMM E R K+ E VR ALAD+P L++++ + L EL E+ RK H+F S +LSGW+G+ + RS+ L G SL+TVDLSRT + LEV ARLF +RT+ LA+CR + NLG+RA+ E C +TLT++D+S C G+N E +A++GGAIGFG CA LQSL+L L LA GCPR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXX L++ VG LV A+ FFG+ P+ + ++ + A+ AA R + AY + E R R+ AA+ +Q +RAH+ + LR ++ ALLA G AR + A+ + +R+ EL+ AAAV + A VR W+ +RC AW EVKRQR RD ++ +Q
Sbjct: 1 MQLDREERLRTAGPKFGLLLAKRMMTAEARLHKQVETAVVRAALADLPASLRDLEFVGTGMEELREGELWEVLRKGHIFVSANLSGWRGISSGALRSLALNTGASLETVDLSRTGVADAQLEVLCARLFAIRTLRLAACRTVTNLGLRAVSELCGATLTALDVSACAGINSEGLAWIGGAIGFGGGCAHLQSLNLG---------LTALAAGCPRLRFLSLEGCLGAGDAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXLVDAVGRDLVAPARAFFGYAPRADLAAAKLRAARAAVRDAAARRL-------------------------------AYAAHXXXXXXXEARERRRCGAAAVRLQAAFRAHAXXXX-AAALRCQRAALLAKGRHXXXXXXXXXXXXXXXGPQARA----VAAAVAALRHERRVELRSAAAVHLGAAVRSWLARRRCGAWAEVKRQRDRDRGAAARCLQ 510
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YTH9_PHYSP) HSP 1 Score: 80.9 bits (198), Expect = 3.220e-12 Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 1
Query: 235 FGSIDLSGWKGVRLLSFRSVCLAVGGSLQTVDLSRTETTNEMLEVFAARLFCLRTINLASCRQLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEAVAYLGGAIG---FGSCCALLQSLSLADCKRMSDVSLRVLAKGC 639
+ + LSG KG + RS+ AVG +L+ +D SRT + ML+V A + L ++ +SC QL + GVR + C ++LT ++LS C L D+A+ ++GGA+G + C L SL ++ + D L L GC
Sbjct: 51 YSLLILSGCKGFTPVGLRSLVHAVGENLRQLDCSRTTLSVPMLQVLATGIERLDVLDFSSCPQLLSEGVREFISCCNTSLTRLNLSRCGALTDDALGWVGGALGPQGSRTRCHRLLSLDVSFTVAICDRGLAALGAGC 188
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Match: Uncharacterized (protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9FDA3_PHYPR) HSP 1 Score: 77.0 bits (188), Expect = 5.330e-11 Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 235 FGSIDLSGWKGVRLLSFRSVCLAVGGSLQTVDLSRTETTNEMLEVFAARLFCLRTINLASCRQLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEAVAYLGGAIG---FGSCCALLQSLSLADCKRMSDVSLRVLAKGC 639
+ + LSG G + RS+ VG +L+ +D S T + ML+V A + L +N +SC QL + GVR + C ++LT ++LS C L D+A+ ++GGA+G + C L SL ++ + D L L GC
Sbjct: 113 YSLLILSGCNGFTPVGLRSLVHTVGETLRQLDCSCTMLSVPMLQVLATGIERLDGVNFSSCPQLLSEGVREFISCCNTSLTRLNLSRCGALTDDALGWVGGALGPQGSRTRCRRLLSLDISYTSAIGDRGLAALGVGC 250
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXT6_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.620e-10 Identity = 45/143 (31.47%), Postives = 80/143 (55.94%), Query Frame = 1
Query: 220 RKCHLFGSIDLSGWKGVRLLSFRSVCLAVGGSLQTVDLSRTETTNEMLEVFAARLFCLRTINLASCRQLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEAVAYLGGAIGFGSC---CALLQSLSLADCKRMSDVSLRVLAKGC 639
R+ HL ++ LSG + R+ AVG +++ +DLS++ + +L+V A + L ++L+ C +L + V + C + LT+++ S+C +ND+A+ ++GGA+G C L SL +A K +SD L L +GC
Sbjct: 109 RRPHLPSTLILSGCDRFTPVGVRAFIHAVGPAIRRLDLSKSVLSTAILKVMATGIEQLEALDLSWCLELKSDSVHEFISCCNAQLTALNASNCPVMNDDALGWIGGALGPQGVLTQCRKLLSLDIAYTKCISDRGLAHLGQGC 251
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Match: Putative (leucine rich repeat calmodulin binding protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YL83_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.760e-10 Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 1
Query: 235 FGSIDLSGWKGVRLLSFRSVCLAVGGSLQTVDLSRTETTNEMLEVFAARLFCLRTINLASCRQLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEAVAYLGGAIG-FGSC--CALLQSLSLADCKRMSDVSLRVLAKGC 639
+ + LSG G + RS+ VG +L+ +D S T + ML+V A + L ++ +SC +L + GVR + C ++LT ++LS C L D+A+ ++GGA+G GS C L SL ++ + D L L GC
Sbjct: 51 YSLLILSGCNGFTPVGLRSLAHVVGETLRQLDCSFTMLSVPMLQVLATGIERLDILDFSSCPRLLSEGVREFISCCNTSLTRLNLSRCGALTDDALGWIGGALGPMGSRTRCRRLLSLDVSYTGAICDRGLAALGAGC 188
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Match: IQ (calmodulin binding motif-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TF50_PHYIN) HSP 1 Score: 73.9 bits (180), Expect = 4.880e-10 Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 1
Query: 235 FGSIDLSGWKGVRLLSFRSVCLAVGGSLQTVDLSRTETTNEMLEVFAARLFCLRTINLASCRQLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEAVAYLGGAIGFGSC---CALLQSLSLADCKRMSDVSLRVLAKGC 639
+ + LS G + RS+ AVG +L+ +D S T + ML+V A + L ++ +SC L + GVR + C ++LT ++LS C L D+A+ ++GGA+G S C L SL ++ + D L L GC
Sbjct: 106 YSLLILSECSGFTPVGLRSLVHAVGETLRQLDCSCTTLSVPMLQVLATGIERLDAVDFSSCPHLLSEGVREFISCCNTSLTRLNLSRCRALTDDALGWVGGALGPQSSRTRCRRLLSLDISYTSAICDRGLAALGVGC 243
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S9Z7_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.080e-8 Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 1
Query: 235 FGSIDLSGWKGVRLLSFRSVCLAVGGSLQTVDLSRTETTNEMLEVFAARLFCLRTINLASCRQLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEAVAYLGGAIG---FGSCCALLQSLSLADCKRMSDVSLRVLAKG 636
+ + LS G + RS+ VG +L+ +D S T + ML+V A + L ++ +SC QL + G+R + C ++LT ++LS C L D+A+ ++GGA+G + C L SL ++ + D L L G
Sbjct: 113 YSHLILSRCNGFTPVGLRSLVHVVGETLRQLDCSCTTLSVPMLQVLATGIERLDVVDFSSCPQLLSEGLREFISCCNTSLTRLNLSRCGALTDDALGWVGGALGPQGSRTRCHRLLSLDVSYTSAICDRGLAALGVG 249
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Match: F-box/LRR-repeat (protein 4-like isoform X4 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C769F64) HSP 1 Score: 62.0 bits (149), Expect = 1.840e-6 Identity = 32/122 (26.23%), Postives = 65/122 (53.28%), Query Frame = 1
Query: 274 LLSFRSVCLAVGGSLQTVDLSRTETTNEMLEVFAARLFCLRTINLASCRQLNNLGVRALVEYCKSTLTSVDLSDCTGLNDEAVAYLGGAIGFGSCCALLQSLSLADCKRMSDVSLRVLAKGC 639
LL +C G +L+++D+S T T E L + CL +N+ C+++ ++G+ ++++C STL S+D+S+ + Y G L++L++ +CK++++ L + K C
Sbjct: 385 LLQILQLC---GSTLRSLDISGTHVTGENLSKYKGTRSCLENLNMRFCKEVTDIGLLQMLQFCGSTLRSLDISEANITGENLSEYKGTL-------PCLENLNMNECKQLTNKGLLQILKLC 496 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig910.17286.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig910.17286.1 >prot_Ecto-sp9_F_contig910.17286.1 ID=prot_Ecto-sp9_F_contig910.17286.1|Name=mRNA_Ecto-sp9_F_contig910.17286.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=554bp MELDRDNRRLEMGPEWGTLLAKRMMLTERRPPKEREAEKVRIALADIPPKback to top mRNA from alignment at Ecto-sp9_F_contig910:11189..17747+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig910.17286.1 ID=mRNA_Ecto-sp9_F_contig910.17286.1|Name=mRNA_Ecto-sp9_F_contig910.17286.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6559bp|location=Sequence derived from alignment at Ecto-sp9_F_contig910:11189..17747+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig910:11189..17747+ >mRNA_Ecto-sp9_F_contig910.17286.1 ID=mRNA_Ecto-sp9_F_contig910.17286.1|Name=mRNA_Ecto-sp9_F_contig910.17286.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3324bp|location=Sequence derived from alignment at Ecto-sp9_F_contig910:11189..17747+ (Ectocarpus species9 EcSCA_722f female)back to top |