mRNA_Ecto-sp9_F_contig9096.17277.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9096.17277.1
Unique NamemRNA_Ecto-sp9_F_contig9096.17277.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU7_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 8.090e-80
Identity = 148/157 (94.27%), Postives = 152/157 (96.82%), Query Frame = 3 
Query:  381 MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPITKLFNEERAKKEATMKQHELLNKPPLPNKAGKKKRDACESPVTTKPNPKKAKSXXXXXXXXXXXXXAALPAAGSASPTLSDAASAGSLIDVTGDGSPSSSPSRNG 851
            MCGDNNEAKGDILLCDSCDAEYHLSCCTPPL+VCPEGEWFCLTCRKNRGEP+TKLFNEERAKKEATMKQHELLNKPPLPNKAGKKKRDACESPVTTKPNPKKAKS  XXXXXXXXXX A LPAAGSASPTLSDAASAGSLIDVTGDGSP+S+ SRNG
Sbjct:  168 MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLQVCPEGEWFCLTCRKNRGEPVTKLFNEERAKKEATMKQHELLNKPPLPNKAGKKKRDACESPVTTKPNPKKAKSSSXXXXXXXXXXAADLPAAGSASPTLSDAASAGSLIDVTGDGSPASNTSRNG 324
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC98_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 8.770e-76
Identity = 147/157 (93.63%), Postives = 148/157 (94.27%), Query Frame = 3 
Query:  381 MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPITKLFNEERAKKEATMKQHELLNKPPLPNKAGKKKRDACESPVTTKPNPKKAKSXXXXXXXXXXXXXAALPAAGSASPTLSDAASAGSLIDVTGDGSPSSSPSRNG 851
            MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEP+TKLFNEERAKKE TMKQHELLNKPPLPNKAGKKKRDACESPVTTKPNPKKAK XXXXXXXXXXXXX      GS SPTLSDAASAGSLIDVTGDGSPSSSPSRNG
Sbjct:  168 MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPVTKLFNEERAKKEVTMKQHELLNKPPLPNKAGKKKRDACESPVTTKPNPKKAKXXXXXXXXXXXXXXXXX---GSTSPTLSDAASAGSLIDVTGDGSPSSSPSRNG 321
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Match: Zinc (finger, PHD-finger n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01B57_OSTTA)

HSP 1 Score: 65.5 bits (158), Expect = 3.110e-8
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:  378 LMCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNR 524
            ++CG +  A G +LLCDSCDAEYH  C  PPL   PEGEWFC TC +N+
Sbjct:  906 IVCGLDVMA-GVVLLCDSCDAEYHTKCLDPPLSAEPEGEWFCPTCVRNK 953
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Match: Protein (RCC2 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369KAG9_HYPMA)

HSP 1 Score: 65.1 bits (157), Expect = 3.200e-8
Identity = 26/55 (47.27%), Postives = 31/55 (56.36%), Query Frame = 3 
Query:  372 LLLMCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPI 536
            L + CG         L CD CD+ YHL C  PPL   P+GEWFC+ CR+  G PI
Sbjct:  440 LCVTCGKEKGEDDSPLACDKCDSPYHLGCLNPPLTAVPDGEWFCVPCRRAPGAPI 494
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Match: nucleosome-remodeling (factor subunit NURF301-like n=2 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F0FF7AC)

HSP 1 Score: 64.3 bits (155), Expect = 7.930e-8
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 3 
Query:  408 GDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPITKLFNE 554
            G++L+CDSC A +HLSC  PPLK  PE EWFC  C++N+   +T   NE
Sbjct:  362 GEMLMCDSCPAVFHLSCLDPPLKQVPEQEWFCPICKQNQVMGVTDCVNE 410
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Match: Bromodomain (adjacent to zinc finger domain 2A n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TT01_CHLSO)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-7
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:  381 MCGDNNEAKGDILL-CDSCDAEYHLSCCTPPLKVCPEGEWFCLTC 512
            +CG ++E  GDILL CDSCD   HLSCC PPLK  P+G+WFC+ C
Sbjct: 1401 LCGQSDE--GDILLLCDSCDNACHLSCCNPPLKRVPKGDWFCVEC 1443
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Match: Bromodomain (adjacent to zinc finger domain 2A n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V9E3_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 1.770e-7
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:  381 MCGDNNEAKGDILL-CDSCDAEYHLSCCTPPLKVCPEGEWFCLTC 512
            +CG ++E  GD+LL CDSCD   HLSCC PPLK  P+G+WFC+ C
Sbjct: 1077 LCGQSDE--GDVLLLCDSCDNACHLSCCNPPLKRVPKGDWFCVEC 1119
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Match: nucleosome-remodeling (factor subunit BPTF-like n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6YHV8_DERPT)

HSP 1 Score: 63.2 bits (152), Expect = 1.900e-7
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 3 
Query:  408 GDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPITKLFNE 554
            G++L+CD+C A +HLSC  PPLK  PE EWFC  C++N+   +T   NE
Sbjct:  350 GEMLMCDTCPAVFHLSCLDPPLKQVPEQEWFCPICKQNQVMGVTDCVNE 398
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Match: PHD (and RING finger domain-containing protein 1 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z783_LYGHE)

HSP 1 Score: 60.5 bits (145), Expect = 4.160e-7
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 3 
Query:  396 NEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPITKLFNEER 560
            ++ + ++LLCD C+A YHL C TPPL+  P+G WFC  C     E +T   +E R
Sbjct:  185 HDREHEMLLCDRCEAGYHLDCLTPPLRAVPDGSWFCPRCTDPNNESVTHNPDEPR 239
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZE13_CHLVA)

HSP 1 Score: 62.0 bits (149), Expect = 4.290e-7
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 3 
Query:  381 MCGDNNEAKGDILL-CDSCDAEYHLSCCTPPLKVCPEGEWFCLTC 512
            +CG ++E  GDILL CDSCD   HLSCC PP K  P+G+WFC+ C
Sbjct: 1139 LCGQSDE--GDILLLCDSCDNACHLSCCNPPFKRVPKGDWFCVEC 1181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9096.17277.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized8.090e-8094.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.770e-7693.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Zinc3.110e-859.18finger, PHD-finger n=2 Tax=Ostreococcus tauri TaxI... [more]
Protein3.200e-847.27RCC2 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepI... [more]
nucleosome-remodeling7.930e-853.06factor subunit NURF301-like n=2 Tax=Dermatophagoid... [more]
Bromodomain1.370e-762.22adjacent to zinc finger domain 2A n=1 Tax=Chlorell... [more]
Bromodomain1.770e-760.00adjacent to zinc finger domain 2A n=1 Tax=Micracti... [more]
nucleosome-remodeling1.900e-751.02factor subunit BPTF-like n=1 Tax=Dermatophagoides ... [more]
PHD4.160e-743.64and RING finger domain-containing protein 1 (Fragm... [more]
Uncharacterized4.290e-760.00protein n=1 Tax=Chlorella variabilis TaxID=554065 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9096contigEcto-sp9_F_contig9096:406..3605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue2.8e-71
Seed eggNOG ortholog2880.D8LPU7
EggNOG free text desc.PHD-finger
EggNOG OGs294SK@1,2RBQ1@2759
Ec32 ortholog descriptionPWWP and PHD-type zinc finger protein
Ec32 orthologEc-18_002550.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size852
Cds size603
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.5513196-CDS-Ecto-sp9_F_contig9096:405..7021622930977.5513196-CDS-Ecto-sp9_F_contig9096:405..702Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9096 406..702 -
1692278976.7181332-CDS-Ecto-sp9_F_contig9096:405..7021692278976.7181332-CDS-Ecto-sp9_F_contig9096:405..702Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9096 406..702 -
1622930977.5641887-CDS-Ecto-sp9_F_contig9096:1218..13921622930977.5641887-CDS-Ecto-sp9_F_contig9096:1218..1392Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9096 1219..1392 -
1692278976.7342923-CDS-Ecto-sp9_F_contig9096:1218..13921692278976.7342923-CDS-Ecto-sp9_F_contig9096:1218..1392Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9096 1219..1392 -
1622930977.5779467-CDS-Ecto-sp9_F_contig9096:2158..22901622930977.5779467-CDS-Ecto-sp9_F_contig9096:2158..2290Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9096 2159..2290 -
1692278976.7479086-CDS-Ecto-sp9_F_contig9096:2158..22901692278976.7479086-CDS-Ecto-sp9_F_contig9096:2158..2290Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9096 2159..2290 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.5901334-UTR-Ecto-sp9_F_contig9096:2290..22911622930977.5901334-UTR-Ecto-sp9_F_contig9096:2290..2291Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9096 2291..2291 -
1692278976.7588263-UTR-Ecto-sp9_F_contig9096:2290..22911692278976.7588263-UTR-Ecto-sp9_F_contig9096:2290..2291Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9096 2291..2291 -
1622930977.6023393-UTR-Ecto-sp9_F_contig9096:2754..28231622930977.6023393-UTR-Ecto-sp9_F_contig9096:2754..2823Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9096 2755..2823 -
1692278976.7682962-UTR-Ecto-sp9_F_contig9096:2754..28231692278976.7682962-UTR-Ecto-sp9_F_contig9096:2754..2823Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9096 2755..2823 -
1622930977.6189952-UTR-Ecto-sp9_F_contig9096:3117..32111622930977.6189952-UTR-Ecto-sp9_F_contig9096:3117..3211Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9096 3118..3211 -
1692278976.779927-UTR-Ecto-sp9_F_contig9096:3117..32111692278976.779927-UTR-Ecto-sp9_F_contig9096:3117..3211Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9096 3118..3211 -
1622930977.6339514-UTR-Ecto-sp9_F_contig9096:3521..36051622930977.6339514-UTR-Ecto-sp9_F_contig9096:3521..3605Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9096 3522..3605 -
1692278976.7916405-UTR-Ecto-sp9_F_contig9096:3521..36051692278976.7916405-UTR-Ecto-sp9_F_contig9096:3521..3605Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9096 3522..3605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9096.17277.1prot_Ecto-sp9_F_contig9096.17277.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9096 406..2290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9096.17277.1

>prot_Ecto-sp9_F_contig9096.17277.1 ID=prot_Ecto-sp9_F_contig9096.17277.1|Name=mRNA_Ecto-sp9_F_contig9096.17277.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=201bp
MPQQRTVTLGQTRTWRRWAPASCTQFPAFRSWRMARARCVFLLLMCGDNN
EAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPITKLF
NEERAKKEATMKQHELLNKPPLPNKAGKKKRDACESPVTTKPNPKKAKSS
STSSPSSAAAVAAALPAAGSASPTLSDAASAGSLIDVTGDGSPSSSPSRN
G
back to top

mRNA from alignment at Ecto-sp9_F_contig9096:406..3605-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9096.17277.1 ID=mRNA_Ecto-sp9_F_contig9096.17277.1|Name=mRNA_Ecto-sp9_F_contig9096.17277.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3200bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9096:406..3605- (Ectocarpus species9 EcSCA_722f female)
GGCCACCATTCACGAGGTGAAGGGAATCAAGAGGCCGCAAGGGAAGGACA
TGATATGCACCTACTTTCTCGGAGATAACAATATGTGAGGAGTGCACCCC
CTTCCTTCCTTTGGACAGAGTTAGAGTTGTTTTGTAGGGTGTTCCTTCCG
CCTCGGTGTTTTTTTGTTTTGTTTTCTTCTTCATAGTCAGTCCTTGACTT
TTTGGCGGTCTACGTCAATCGCTGCTGTCGTTCGATGTTTGCCTCCCTAC
CTCACTGAGTCTTCTAGTTGGGGGGTGCAGTGGCTCGAGCTCAAGAGTCG
GGGGCCTTTTTTATTTCATTTTCTCACTACTGACGTTTGGCTCTCTCGTT
GCGCGCCATCCTTGCGCCAACCAACCGCCACCCCCTGCGTGCAGAGGGTT
CGTGAAGTTGAGCAACGTCCTCCGGTTCACCCGGGAGAACTGCGAGCAGT
ACGGCTCCCGCATCACCACCAAGTCCTTCAAGGACGGGGTGAGCTTTGAT
TTACAACCAGCAGCGGTCATTATCTAGGTCTAGTTGTTGTCGTGGCGCAA
TCCCCTGGACTCGAGAGACGCTCGGAAAAAAAAATAAAAAAATGCACGCG
CCCATCCACTCCCCTGCTGTTCGCAAAGAGGGATTTTTTCCGACTCGTTC
ACGAGATTCAAGGATTTTTTTTTTTTTCGCGATGCCGAAGGCATGGCGGC
GTAGCACGGTCTTGCGAGTCTCGATGGCGTGAAATTGATAAAACGTGTTT
CTCGATATTTGTTTGGCATGCTTGTGTGCCAGGTGGCGGCGGCGATTGCA
CTGCTGAACGAGAGCGAGACCTGGGACAAGGAGTTCCAAGCTAGAGCGCT
GGTGAGCTTTTTAGCCTCCCTTGTTGTTCCGTTCCGTTCCGTTGTTTTGT
GCCCTGTCAGTTTTACCTCGCGCTGTCGGACGGTATGCCTAGCAGGGCTC
GGCATGATAGGGTACGACGGTTTTGCTCGTATTGCGACAAGTTTGATTGT
ACGGGGTGATGCTGCCTGAACACACACGTGCGCGCGTGCATGAATGTGCC
AGCAGCGGCCGCGGGTGACGGATATCCTACATATCTTGAGGGAAGGACTG
CCTTGCCTCTCTCTCTCTGTTCTCTTTCTCTTCTGTATCACTTACACACA
AAACACACACACACATACGCACATTCTCGGACCAAGCGACCCGACGCCAC
CCATGGCGTTGTCTCATGACACGTCGTGCCATCCGATGTCATATCTAGAA
ATGAACGTGTTGCTTTTGTATCCATCTACTATCCTCTACAATTCTCTCGC
TTTTTCTTTCCAAGGATGCCGCAACAGCGAACGGTAACTCTGGGGCAGAC
AAGAACCTGGCGGCGGTGGGCGCCGGCGTCTTGCACCCAGTTCCCGGCAT
TCCGTTCTTGGAGGATGGCGCGTGCGAGGTGCGTGTTCCTGTTATTAGCA
TCGACCGCGCTAACCGGCTGACCAATGAAAGTGTATGTGTGTGTGTCTTC
AGTTGATATTGCATCGACCGCACTCACCGGCTAACCACTGAAATGACGTC
AGTCTCAATGCGGCTGTGTGTGTGGTGTGTGCATCTTTATTATTAGCATC
GACCGCGCTGACCGGCTGACCAATGAAAAGACGTCAGTCTTAGTGCGGCT
GAAAACACAAAACACTTCTATCTGCCATGAATTGGGACCCCGTGAGGGGG
CAGCATGGGGGAGATGTGTGTGTGCGTGTGCGTGTGTTGTTTCATTGGAA
TCGAGCGTTCTAACTGACTGACCAACGAATAGAAGTCAGTCTCAGTGCGG
CTGTGTGTGTGTTTTTTTTTTTTTTTTAGGATGTGAACGCGCTAACCACC
TCATCAATGAGTGTCATCAGTTTCTTCTTGTGGCGGGACGAAAAATGCAA
ACATGCGCTCTAGTCGGCGCCCCCCCCCTGGACACGTGTGTATTGTGTGT
TCCCACTAAACCTCCCGTCCGCCGCTTGTCCTCTTTTTGTTTTTTGTTTT
TGTTTGCATCGTGTGAATTTTCCGCTTGATATTGGCGTTAGTGGTCAGTT
GTAGTGTGCAAACGCGTAAGATCCTGTTAACACCAACAACGACAAAACAA
AACACCAAAAACGGCGTCGCCACGACGAACAGCAGCAGCAGCAGTAGTAA
CAACATGCATTCCACCGACAACAACGGCGCACGCCAACATAAACAACGGC
TGCGTTGTGACAGATGTGCGGGGACAACAACGAGGCCAAGGGGGACATCC
TCCTCTGCGACTCTTGCGATGCCGAGTACCACCTCTCGTGCTGCACGCCG
CCGCTCAAGGTGTGCCCGGAGGGCGAGTGGTTCTGCCTCACGTGCCGCAA
AAACCGGGGGGAGCCCATCACCAAGCTGTTCAACGAGGTGCGGAAGTGCC
AAGATCTTTTTGAGGGGACAGGGTCGCTTTTAGTTGGTGGTTTGCCGGCG
GTTGGCGGACGGATGTCTGCTGTCCCGAAGCGCGTCACGTCTTTTGAGAT
TGGTGTTGGGCGTGTTTGGCATCCAGGTTTTCCAAGTGGCAGAGGGCGAT
GGTATCGCGACTTAGCTCTGCCCCCCCCCCCCCCAAGAATTTTACGCGTT
GCGGTGCGGGTATATTCGTGTGTAAATACTGCAGATGTCGGGTCCGTTGA
TGACTCGGTTCTCGCGACAACCATAACCAAGCGTGCCCATGCAACAATTA
AAGTAACAACTGCTGTGTGGCCTTCCTCTTGTGTGACCCCGGTTGATGCG
TCGAACATGTGCACCGGCGTCAGAATACATGGGACGAACATACACACGCT
TACAGGGTCGTACCAGGTCCCTTGTGTAGACGCTTTTTGCTCGCCCTCTT
CGCCCGCCGTTGCGCTAACGCAACGACATGCCCGCCGCGCATCGATGCAG
CAGGAGCGAGCAAAGAAGGAGGCCACGATGAAGCAGCACGAGTTGCTCAA
CAAGCCGCCCCTGCCCAACAAGGCCGGGAAGAAGAAGCGCGACGCCTGCG
AGTCCCCGGTGACGACCAAGCCCAACCCGAAGAAGGCCAAGTCGAGCAGC
ACCAGCAGCCCGTCCTCTGCCGCCGCCGTCGCCGCCGCCTTGCCTGCTGC
AGGGAGCGCCTCCCCTACCCTCTCCGACGCTGCAAGCGCCGGGTCTCTCA
TCGACGTTACCGGCGACGGCTCGCCGTCTTCCAGCCCCAGCCGGAACGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9096:406..3605-

>mRNA_Ecto-sp9_F_contig9096.17277.1 ID=mRNA_Ecto-sp9_F_contig9096.17277.1|Name=mRNA_Ecto-sp9_F_contig9096.17277.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1206bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9096:406..3605- (Ectocarpus species9 EcSCA_722f female)
ATGCCGCAACAGCGAACGGTAACTCTGGGGCAGACAAGAACCTGGCGGCG
GTGGGCGCCGGCGTCTTGCACCCAGTTCCCGGCATTCCGTTCTTGGAGGA
TGGCGCGTGCGAGGTGCGTGTTCCTGTTATTAATGCCGCAACAGCGAACG
GTAACTCTGGGGCAGACAAGAACCTGGCGGCGGTGGGCGCCGGCGTCTTG
CACCCAGTTCCCGGCATTCCGTTCTTGGAGGATGGCGCGTGCGAGGTGCG
TGTTCCTGTTATTAATGTGCGGGGACAACAACGAGGCCAAGGGGGACATC
CTCCTCTGCGACTCTTGCGATGCCGAGTACCACCTCTCGTGCTGCACGCC
GCCGCTCAAGGTGTGCCCGGAGGGCGAGTGGTTCTGCCTCACGTGCCGCA
AAAACCGGGGGGAGCCCATCACCAAGCTGTTCAACGAGATGTGCGGGGAC
AACAACGAGGCCAAGGGGGACATCCTCCTCTGCGACTCTTGCGATGCCGA
GTACCACCTCTCGTGCTGCACGCCGCCGCTCAAGGTGTGCCCGGAGGGCG
AGTGGTTCTGCCTCACGTGCCGCAAAAACCGGGGGGAGCCCATCACCAAG
CTGTTCAACGAGGAGCGAGCAAAGAAGGAGGCCACGATGAAGCAGCACGA
GTTGCTCAACAAGCCGCCCCTGCCCAACAAGGCCGGGAAGAAGAAGCGCG
ACGCCTGCGAGTCCCCGGTGACGACCAAGCCCAACCCGAAGAAGGCCAAG
TCGAGCAGCACCAGCAGCCCGTCCTCTGCCGCCGCCGTCGCCGCCGCCTT
GCCTGCTGCAGGGAGCGCCTCCCCTACCCTCTCCGACGCTGCAAGCGCCG
GGTCTCTCATCGACGTTACCGGCGACGGCTCGCCGTCTTCCAGCCCCAGC
CGGAACGGCGAGCGAGCAAAGAAGGAGGCCACGATGAAGCAGCACGAGTT
GCTCAACAAGCCGCCCCTGCCCAACAAGGCCGGGAAGAAGAAGCGCGACG
CCTGCGAGTCCCCGGTGACGACCAAGCCCAACCCGAAGAAGGCCAAGTCG
AGCAGCACCAGCAGCCCGTCCTCTGCCGCCGCCGTCGCCGCCGCCTTGCC
TGCTGCAGGGAGCGCCTCCCCTACCCTCTCCGACGCTGCAAGCGCCGGGT
CTCTCATCGACGTTACCGGCGACGGCTCGCCGTCTTCCAGCCCCAGCCGG
AACGGC
back to top