mRNA_Ecto-sp9_F_contig9092.17275.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9092.17275.1
Unique NamemRNA_Ecto-sp9_F_contig9092.17275.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Match: BTB (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.130e-17
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 QLFMFGGYGGSGRLDDFWEFDFESRIWKEVHCQGPSPGV 117
            +LFMFGGYGGSGRLDDFWEFDFESRIWKEVHCQGPSPGV
Sbjct:   44 KLFMFGGYGGSGRLDDFWEFDFESRIWKEVHCQGPSPGV 82
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Match: Leucine-zipper-like (transcriptional regulator 1 (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SJ80_PEROL)

HSP 1 Score: 70.1 bits (170), Expect = 2.910e-11
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    4 LFMFGGYGGSGRLDDFWEFDFESRIWKEVHCQGPSPGVRENNGVVEYKGSL 156
            L++ GGYGGSGRLDD ++FDF +R+W +VH +G +P  RENNG V  K ++
Sbjct:  104 LYVLGGYGGSGRLDDLFKFDFNTRLWSQVHTKGETPTGRENNGAVVIKNNM 154
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Match: Hypothetical (protein n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U6MZ52_9DINO)

HSP 1 Score: 68.2 bits (165), Expect = 2.180e-9
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 LFMFGGYGGSGRLDDFWEFDFESRIWKEVHCQGPSPGVRENNG 132
            L++FGGYGGSGRLDD + FDF++R W +VH QG  P  RENNG
Sbjct:   60 LYVFGGYGGSGRLDDIFRFDFQTRCWAQVHAQGSVPVGRENNG 102
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Match: BTB (domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8G5_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 6.030e-8
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 QLFMFGGYGG-SGRLDDFWEFDFESRIWKEVHCQGP-SPGVRENNGVV 138
            +L++FGGYGG +GRLDDF+ +DFES  W+EVH      PG RENNGVV
Sbjct:   65 KLYVFGGYGGGTGRLDDFYSYDFESNEWQEVHVLSEYRPGCRENNGVV 112
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Match: Lztr1 (protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812JMV1_9DINO)

HSP 1 Score: 63.9 bits (154), Expect = 6.280e-8
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 LFMFGGYGGSGRLDDFWEFDFESRIWKEVHCQGPSPGVRENNGVV 138
            L++FGGYGGSGRLDD + F+F SR W  +  QG  P  RENNG V
Sbjct:   29 LYVFGGYGGSGRLDDIYRFNFPSRYWTRLEVQGTVPAGRENNGAV 73
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PEB9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.840e-8
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 QLFMFGGYGG-SGRLDDFWEFDFESRIWKEVHCQGP-SPGVRENNGVV 138
            +L+MFGGYGG +GRLDDF++F F+S  W EV       PG RENNGVV
Sbjct:  103 RLYMFGGYGGGTGRLDDFYQFSFDSNTWSEVEVLSDVKPGCRENNGVV 150
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL40_AURAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.020e-7
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 QLFMFGGYGGSGRLDDFWEFDFESRIWKEVH-CQGPSPGVRENNGVVEYKGSL 156
             +++FGGYGG GRLDDF  FD ++  W  V    G +PG+RENNG++E++G L
Sbjct:   31 HMYIFGGYGGGGRLDDFHCFDLDNTRWSCVEPSSGLTPGMRENNGLIEFRGKL 83
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Match: Leucine-zipper-like (transcriptional regulator 1 n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PHS8_PEROL)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-7
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   22 YGGSGRLDDFWEFDFESRIWKEVHCQGPSPGVRENNGVVEYKGSL 156
            YGGSGRLDD ++FDF +R+W +VH +G +P  RENNG V  K ++
Sbjct:  241 YGGSGRLDDLFKFDFNTRLWSQVHTKGETPTGRENNGAVVIKNNM 285
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EC03_TRICV)

HSP 1 Score: 59.7 bits (143), Expect = 1.220e-7
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 QLFMFGGYGG-SGRLDDFWEFDFESRIWKEVHC-QGPSPGVRENNGVV 138
            +L+MFGGYGG +GRLDDF+ F F++  W+EV       PG RENNGVV
Sbjct:   46 RLYMFGGYGGGTGRLDDFYSFSFDTCAWEEVRVLSSEKPGCRENNGVV 93
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9B3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.400e-7
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 QLFMFGGYGG-SGRLDDFWEFDFESRIWKEVHCQGPS-PGVRENNGVV 138
            +L+MFGGYGG +GRLDDF+ F F++  W+EV       PG RENNGVV
Sbjct:   22 RLYMFGGYGGGTGRLDDFYSFSFDTCTWEEVQVLSKEKPGCRENNGVV 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9092.17275.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
BTB2.130e-1797.44domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Leucine-zipper-like2.910e-1154.90transcriptional regulator 1 (Fragment) n=1 Tax=Per... [more]
Hypothetical2.180e-965.12protein n=2 Tax=Brandtodinium nutricula TaxID=1333... [more]
BTB6.030e-862.50domain-containing protein n=2 Tax=Fistulifera sola... [more]
Lztr16.280e-860.00protein n=1 Tax=Symbiodinium necroappetens TaxID=1... [more]
Hypothetical9.840e-860.42protein (Fragment) n=1 Tax=Skeletonema marinoi Tax... [more]
Uncharacterized1.020e-750.94protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Leucine-zipper-like1.180e-755.56transcriptional regulator 1 n=1 Tax=Perkinsus olse... [more]
Hypothetical1.220e-758.33protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
Hypothetical1.400e-758.33protein (Fragment) n=1 Tax=Proboscia inermis TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9092contigEcto-sp9_F_contig9092:871..5518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue9.6e-08
Seed eggNOG ortholog44056.XP_009041123.1
KEGG koko:K20285
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-09_001240.1
Exons7
Model size792
Cds size783
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9092.17275.1prot_Ecto-sp9_F_contig9092.17275.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9092 871..5509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.3067064-CDS-Ecto-sp9_F_contig9092:870..9721622930977.3067064-CDS-Ecto-sp9_F_contig9092:870..972Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 871..972 -
1692278976.5776696-CDS-Ecto-sp9_F_contig9092:870..9721692278976.5776696-CDS-Ecto-sp9_F_contig9092:870..972Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 871..972 -
1622930977.3582387-CDS-Ecto-sp9_F_contig9092:1486..16261622930977.3582387-CDS-Ecto-sp9_F_contig9092:1486..1626Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 1487..1626 -
1692278976.5977268-CDS-Ecto-sp9_F_contig9092:1486..16261692278976.5977268-CDS-Ecto-sp9_F_contig9092:1486..1626Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 1487..1626 -
1622930977.3725631-CDS-Ecto-sp9_F_contig9092:1988..20521622930977.3725631-CDS-Ecto-sp9_F_contig9092:1988..2052Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 1989..2052 -
1692278976.60676-CDS-Ecto-sp9_F_contig9092:1988..20521692278976.60676-CDS-Ecto-sp9_F_contig9092:1988..2052Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 1989..2052 -
1622930977.3855352-CDS-Ecto-sp9_F_contig9092:2786..29051622930977.3855352-CDS-Ecto-sp9_F_contig9092:2786..2905Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 2787..2905 -
1692278976.6158178-CDS-Ecto-sp9_F_contig9092:2786..29051692278976.6158178-CDS-Ecto-sp9_F_contig9092:2786..2905Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 2787..2905 -
1622930977.4011087-CDS-Ecto-sp9_F_contig9092:3645..37951622930977.4011087-CDS-Ecto-sp9_F_contig9092:3645..3795Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 3646..3795 -
1692278976.6263185-CDS-Ecto-sp9_F_contig9092:3645..37951692278976.6263185-CDS-Ecto-sp9_F_contig9092:3645..3795Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 3646..3795 -
1622930977.4184387-CDS-Ecto-sp9_F_contig9092:4470..46201622930977.4184387-CDS-Ecto-sp9_F_contig9092:4470..4620Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 4471..4620 -
1692278976.6376536-CDS-Ecto-sp9_F_contig9092:4470..46201692278976.6376536-CDS-Ecto-sp9_F_contig9092:4470..4620Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 4471..4620 -
1622930977.4337583-CDS-Ecto-sp9_F_contig9092:5451..55091622930977.4337583-CDS-Ecto-sp9_F_contig9092:5451..5509Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 5452..5509 -
1692278976.655432-CDS-Ecto-sp9_F_contig9092:5451..55091692278976.655432-CDS-Ecto-sp9_F_contig9092:5451..5509Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9092 5452..5509 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.452129-UTR-Ecto-sp9_F_contig9092:5509..55181622930977.452129-UTR-Ecto-sp9_F_contig9092:5509..5518Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9092 5510..5518 -
1692278976.667419-UTR-Ecto-sp9_F_contig9092:5509..55181692278976.667419-UTR-Ecto-sp9_F_contig9092:5509..5518Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9092 5510..5518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9092.17275.1

>prot_Ecto-sp9_F_contig9092.17275.1 ID=prot_Ecto-sp9_F_contig9092.17275.1|Name=mRNA_Ecto-sp9_F_contig9092.17275.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=261bp
MFGGYGGSGRLDDFWEFDFESRIWKEVHCQGPSPGVRENNGVVEYKGSLY
LFGGYNGSQWLNDFHGFHIETRTWRKVEPAGAPPVSRFGYVAVVHSHYFC
LFGGYDGTTWLNDMHRFNFDTSLWEEVNTSGQIPSIRSCPSWCKDGDNVY
VFGGYDGVQRMNDFYRCDLETMTWAQIPGIGDVPTPRYFHSCAVHNGSMY
VFGGYNGSDRLCDFFEHNFDTGTWTELEPHGDLPTGRSSLVAQVHGNSLF
IFGGYNGQVML
back to top

mRNA from alignment at Ecto-sp9_F_contig9092:871..5518-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9092.17275.1 ID=mRNA_Ecto-sp9_F_contig9092.17275.1|Name=mRNA_Ecto-sp9_F_contig9092.17275.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9092:871..5518- (Ectocarpus species9 EcSCA_722f female)
CAGCTGTTCATGTTCGGAGGGTACGGAGGCAGCGGGCGATTGGACGATTT
CTGGGAGTTCGATTTTGGTGAGGCCGAACCGCAGGGAACCTAGCCGACGT
CCGGTGATCGGCCGACCAGTGTTCGACCTCGGGGTTAGATATTCTCATGT
GTGCGTGCGACCCATGAACCACGAATCGGATGTATTTTTTGTGTTAATTC
CAACAAAAAAGTAACTGGGCACAAAGGGACGGGCATATGCTGGCATGGGG
GCAGCTGCCGGCAACGGCCTCACTCACTACCGTACCCTGACGATGTGTAC
AGTACACGGTTGTTTTGGAGAGACACGCTGGAAAAAGTGAAAGGGTTTAC
TCGGTAGTTTGACCGCCATCGGTTGTATCGAGAAACAAACACCTTGGGAC
GTTCGGACTACCTGGCACTCGAGCGGTATGCATGCGTATTTTCGGGAATA
ATCGCTCGGCCTAAACCAGTACCCTGACTAGAGTACGTACACGTCGGCTT
TGGTGGGTTCCAGACTTCGGTTGGGTCAGCCCGTCTACCGTCTACTATTG
GTTGCTCGCGCTCTATCACATTTTTGTACAATTAGCGCACATTTTTTTCA
GGTGATTGTATTTTTGTGTTTTTTTTACCTCGGAACCTAGAGGAGGCCCA
ATGCAATGGATCGTCTTGTGGCTTCTTTTTTTCTTTCTCCCAAAAAACGA
AACAAACTTATCTCATTCCAAGATATGTTAGCGAATGGAATCAATGTGTG
TTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTTTAACATTTGTA
TGCATGCTATATACGCTGTAAATGTAATTTATACCAAATACGCTTGTTGT
ACTTGTATGACACACACAATTGAATCTGCGCTTCTTGTTTTGCTGCAGAA
AGTCGAATCTGGAAGGAGGTGCACTGCCAAGGGCCCTCGCCCGGCGTGCG
TGAGAACAATGGTGTAGTGGAGTACAAAGGCTCTCTCTACCTGTTTGGGG
GATACAACGGGTCGCAATGGCTCAACGACTTCCACGGTTTTCACATCGGT
GAGGTTCCTTTTTTTGTTTTGTTTAGGGTTATATGTGCATGGGTGGACTT
TCTGTCGTTTTTTTTTTTTTTATGCACGGCGTCGACCTTTTTTCATACGT
ACGTGGAGTTCAGTTCACATCGGGTGTTTTGTTCTTTCGGCTACAGGGGT
AGGGGTACAAGGCCATCTAACCCTATCCCTAACCCTAACACCCTAGAGAG
GCTGACCTTGCGACGGGGATGCTTCTAGCCCTCGCCGCCCTTTGCCCCGC
CGGCCCAACATTCAGGTGCCGTTTTTGGACCTAGCTCAACAACAAAGCGC
GAACTTATGCTATGCGCAGCCCATGCTGGCGGTCTCTTGTCTCTCGGCTT
CCGCACTTGGCCTTTTGGGCGATACATATCATATCATACGGGATTGAGAA
CCAAAGTTTCGTATTTTTGCTCTCTTCCCGATGTGCGTGCCCCCCCCCCC
CCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCTTTCTTC
ACCGCTTTTGGCTNNNNNNNNNNGCCTTTTGGGGGATAATTATCACTCCA
TACGGGGTTGGGAACCAAAGATTCGTGTTTTTGCTCCCCTCCCCACGGTC
GGGCCCCCCCCCCCCCCCCCTTGTGCCCCCCCCGCCCCGCCCCACCCGTG
CTGTTTTGCTCTGATGATCGCAGAAACGCGAACTTGGCGAAAAGTGGAGC
CCGCGGGGGCGCCGCCGGTTTCACGGTTTGGGTACGTGGCGGTGGTCCAC
AGCCACTACTTCTGCCTGTTTGGGGGATACGACGGGACCACTTGGCTAAA
CGACATGCACCGGTTCAACTTTGGTGAGGACATATACATTTTTTTTTTTT
TGTGGTCTTCACTTCAAATCCGTGCTCACGGCGCTTGTGCCGTTTACTCC
AACCCGTGGTCACACAGGAGGGTTTCCCCGTGTTACCGGTGTGTTTTTTT
TTTTTTCCCAGGAATTTGGTTTCACACTCGTTTTATGGCACGTTTGAAGC
ACAATGCCACGGGTATATGTCACCCTGTAGATCAGAGCCTCCTCCCCTCA
AAGGATTTCGATGCGAGCTTTTTGTTTGCGTAGCATGAGGGTTTGAGACC
CTGCCGCTATTTTGGAAAAGACTGACTGATGTCAGATCGTCTTGAGAGTT
GGACTCTGGCTGGACAGCAGGGCTGTTGTTTTAGCTAGTCTGAGGCACAA
GGTGGCACGAATTTCCTTACACAGCTAGCTGGGTGTATTTTGTTCCCGGA
GTGCATGCGAGCAAGTGCACGCGCTTTCTCTGAAGCTGACATCATAATAT
TTGGCCATCTACGTATATGTACGCACGTGCGTATTCTTGCGGCAGCCTCC
CGCTGCTCCTGTTTTCTCTTGTAGCTGTTATGTTTCTTGGGGGCATTTTT
CATTTTTTTTTTTTCTGTCACGCTGGACACCTCCCCCATGTAACGGAACA
TTGGCCTGACCACAGTTTCGAGATACATGTTGACCTTTTTCCTTTGGCGT
ATCTCGAACGACACCCATTTTATCTGTCGCTTTTTTTTTGTTTGTTTTTT
CGGGGTGGTATAGACACGTCCTTGTGGGAGGAGGTGAACACGTCGGGACA
GATCCCGTCCATCCGGTCGTGCCCCAGCTGGTGCAAGGACGGCGACAACG
TCTACGTCTTCGGGGGTTACGACGGCGTACAGGTAGCTGGTAGTAGTTCG
TGCCCGTCGCCTTTTGGAGAGTTGCAGGCCGCGTGCGCTGTGCGTCCAGC
ATTGCCCGCGTAAGGTAGTGAGATGGTTACTCTGGAGTTTTGATAAGACC
TACAATGAGTTTTGTCCTTCTGAGGGCTGCGATGGCGTACAGGTATTCTG
GTAGTGATTTACGTCTGTCGCCTTTTGGAGAAGTGCAGGCCGCGTGCGTG
CGTGCGTGTATCCGTGCGTGCGTGCATGCGTCAGTTTGCTAACACTTCAA
AGTATCGCCCGCGCAAGTCATGACGTTGATGTAGTGTTCTGTCCTTGAAC
GATCGTATTGATACTTATGTGCTATCTAAAGAATGCGTCTTGTCACTCTA
TCCTGACTCGCCAACTACATGGCGCCGTCATTGATCCCGACTCAACAAAC
GTCAGCACGTTTTCGAACCCGCGCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCTTCCCCTCCCCCCCCCCCCCCCCTTTCTCCCCTGTTTTTTT
TTCCTGTTTTNNNNNNNNNNCCCCCTTCCCCGCCCCCCCAACCACAGGGC
GCCCCCATTGACCCCCCCCCACCAAACGCCAGCACGTTTTCGAACCCCCG
CCCCCCCCCCCCCCCCATCCCTGCCCGTGCAACTTTTCTCTTCTCCCTCG
TCCCGTTTGTCTGACTTTGTTTTTTTCCCGGTTGTTTCGGCCCGTGTGTG
AAATGAAAATCGACAGCGGATGAACGATTTTTACCGGTGTGATCTGGAGA
CGATGACGTGGGCGCAAATACCGGGGATAGGTGAGCGAGCGTGTGTGTGC
CCTCCTCTCTCTCTCTCTCTCTCCCTCTGTCTTTCTTTCTCTCTCTCTTC
GTTTGGCACCTACATTAGATGCGTTGCTACGGGAGAGTTGTGCACCCCGG
TCATGTTTGTTCGCCACTTGTGCTGGTTGCGTCTCACGTCTGCAGTGTCC
TCTGTGTTAGATACCATCGTAACGGCGGTATATGCCCTGTACGCTGTTAC
TCTGGCTTGTTGCCCTTTTGCGCTGTGACACAACAGTGTTGTATTTTGTG
GTCCTGTTGGCTTGTTCGCCTGCCTCGCACCTCTTTATGTATTTTTTGGT
TGTTTTTTGTCCACTTTTCCCCGACAACTACACGACGGTCAGGCGATGTG
CCGACCCCGAGATATTTCCACTCGTGCGCCGTCCACAACGGATCTATGTA
CGTCTTCGGGGGATACAACGGCTCCGACCGGCTGTGTGACTTCTTCGAGC
ACAACTTCGACACCGGCACATGGACAGAGCTTGTGAGTTATTAACATTTG
AACATTTTCATAGTTAGTTCAGTTTTTGGGCACGCAAACGTGCTGCAGGG
ATGTAGGTGTACCTCTTCGGGCTTGTGTACCCTTTTCTTGCTAGTTTGCG
TGTTCTTTAGATCTTCTGATGGCTCTAGCATTTTTGTGACCACGGACCGC
GTCTTTGCTAGATTTTGGGACTAGCAACTGACACGAGTTTAATGTGAAGA
CAACAACGACAACAACAATATTTCCCTAGGGAGGCTTCGTACCTACGCGA
TGGGGGACGGGGGAGCATCAATTGTTCGTTCATGATGTAGTTTTAAATGT
TGTTGTTGTTGCTGCTGTTGCCGTTGTTGCTCTTGTTGTTGCTGCTGTTG
TCGGCATCCTGGCCATCATGTTCTTTCGTGCATGGTCTATTTCCGCTTGC
TGTTTTCGCTTGTGTCTGGCGTCGGTGTTGACCCGAAGCCCCACTCGCTT
GTTGTTCTTTCCGTTCTCGGCCGGTGTCGGCGTTGACGTTACCCAGGAGC
CTCACGGAGACCTTCCGACGGGAAGAAGCAGCCTCGTGGCGCAGGTCCAT
GGTAACTCTCTCTTCATCTTCGGCGGCTACAACGGCCAGGTGATGTTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9092:871..5518-

>mRNA_Ecto-sp9_F_contig9092.17275.1 ID=mRNA_Ecto-sp9_F_contig9092.17275.1|Name=mRNA_Ecto-sp9_F_contig9092.17275.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1566bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9092:871..5518- (Ectocarpus species9 EcSCA_722f female)
ATGTTCGGAGGGTACGGAGGCAGCGGGCGATTGGACGATTTCTGGGAGTT
CGATTTTGATGTTCGGAGGGTACGGAGGCAGCGGGCGATTGGACGATTTC
TGGGAGTTCGATTTTGAAAGTCGAATCTGGAAGGAGGTGCACTGCCAAGG
GCCCTCGCCCGGCGTGCGTGAGAACAATGGTGTAGTGGAGTACAAAGGCT
CTCTCTACCTGTTTGGGGGATACAACGGGTCGCAATGGCTCAACGACTTC
CACGGTTTTCACATCGAAAGTCGAATCTGGAAGGAGGTGCACTGCCAAGG
GCCCTCGCCCGGCGTGCGTGAGAACAATGGTGTAGTGGAGTACAAAGGCT
CTCTCTACCTGTTTGGGGGATACAACGGGTCGCAATGGCTCAACGACTTC
CACGGTTTTCACATCGAAACGCGAACTTGGCGAAAAGTGGAGCCCGCGGG
GGCGCCGCCGGTTTCACGGTTTGGGTACGTGGCGGTGGTCCACAGCCACT
ACTTCTGCCTGTTTGGGGGATACGACGGGACCACTTGGCTAAACGACATG
CACCGGTTCAACTTTGAAACGCGAACTTGGCGAAAAGTGGAGCCCGCGGG
GGCGCCGCCGGTTTCACGGTTTGGGTACGTGGCGGTGGTCCACAGCCACT
ACTTCTGCCTGTTTGGGGGATACGACGGGACCACTTGGCTAAACGACATG
CACCGGTTCAACTTTGACACGTCCTTGTGGGAGGAGGTGAACACGTCGGG
ACAGATCCCGTCCATCCGGTCGTGCCCCAGCTGGTGCAAGGACGGCGACA
ACGTCTACGTCTTCGGGGGTTACGACGGCGTACAGACACGTCCTTGTGGG
AGGAGGTGAACACGTCGGGACAGATCCCGTCCATCCGGTCGTGCCCCAGC
TGGTGCAAGGACGGCGACAACGTCTACGTCTTCGGGGGTTACGACGGCGT
ACAGCGGATGAACGATTTTTACCGGTGTGATCTGGAGACGATGACGTGGG
CGCAAATACCGGGGATAGCGGATGAACGATTTTTACCGGTGTGATCTGGA
GACGATGACGTGGGCGCAAATACCGGGGATAGGCGATGTGCCGACCCCGA
GATATTTCCACTCGTGCGCCGTCCACAACGGATCTATGTACGTCTTCGGG
GGATACAACGGCTCCGACCGGCTGTGTGACTTCTTCGAGCACAACTTCGA
CACCGGCACATGGACAGAGCTTGCGATGTGCCGACCCCGAGATATTTCCA
CTCGTGCGCCGTCCACAACGGATCTATGTACGTCTTCGGGGGATACAACG
GCTCCGACCGGCTGTGTGACTTCTTCGAGCACAACTTCGACACCGGCACA
TGGACAGAGCTTGAGCCTCACGGAGACCTTCCGACGGGAAGAAGCAGCCT
CGTGGCGCAGGTCCATGGTAACTCTCTCTTCATCTTCGGCGGCTACAACG
GCCAGGTGATGTTGGAGCCTCACGGAGACCTTCCGACGGGAAGAAGCAGC
CTCGTGGCGCAGGTCCATGGTAACTCTCTCTTCATCTTCGGCGGCTACAA
CGGCCAGGTGATGTTG
back to top