mRNA_Ecto-sp9_F_contig9090.17274.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9090.17274.1
Unique NamemRNA_Ecto-sp9_F_contig9090.17274.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9090.17274.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9090contigEcto-sp9_F_contig9090:4389..5417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9090.17274.1prot_Ecto-sp9_F_contig9090.17274.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9090 4454..5417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.2149706-UTR-Ecto-sp9_F_contig9090:4388..44531622930977.2149706-UTR-Ecto-sp9_F_contig9090:4388..4453Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9090 4389..4453 +
1692278976.5459037-UTR-Ecto-sp9_F_contig9090:4388..44531692278976.5459037-UTR-Ecto-sp9_F_contig9090:4388..4453Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9090 4389..4453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.2292705-CDS-Ecto-sp9_F_contig9090:4453..44651622930977.2292705-CDS-Ecto-sp9_F_contig9090:4453..4465Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9090 4454..4465 +
1692278976.5556629-CDS-Ecto-sp9_F_contig9090:4453..44651692278976.5556629-CDS-Ecto-sp9_F_contig9090:4453..4465Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9090 4454..4465 +
1622930977.255141-CDS-Ecto-sp9_F_contig9090:5231..54171622930977.255141-CDS-Ecto-sp9_F_contig9090:5231..5417Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9090 5232..5417 +
1692278976.5661237-CDS-Ecto-sp9_F_contig9090:5231..54171692278976.5661237-CDS-Ecto-sp9_F_contig9090:5231..5417Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9090 5232..5417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9090.17274.1

>prot_Ecto-sp9_F_contig9090.17274.1 ID=prot_Ecto-sp9_F_contig9090.17274.1|Name=mRNA_Ecto-sp9_F_contig9090.17274.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=66bp
MPNSSSPVAEDYEERSTWNIIFSSFCSWLSSRRGGGRGGKIDHPSNSFAC
PPPPWERRWYDVGYR*
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mRNA from alignment at Ecto-sp9_F_contig9090:4389..5417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9090.17274.1 ID=mRNA_Ecto-sp9_F_contig9090.17274.1|Name=mRNA_Ecto-sp9_F_contig9090.17274.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1029bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9090:4389..5417+ (Ectocarpus species9 EcSCA_722f female)
GGGATGGGCTGCAGCGGTAGGTTCGGGATCTCGGGAACCACTCAAGCAAC
AGGAAGGATCTGAGCATGCCAAATTCGGTGAGACTGACGGTTTTGTCATT
GGTATTTCTTAGACGTATACTTTCGTCTGCCATCATTGCGTCCATACCGT
CGTCGTTTGGTGACCAGGTTATCTTCCTAGATGCTGTCTGTGACATCATT
ACTTATCTGCTTGTGTACTACCTTTCCTCTCTGCCATACCTCTCTGCCAT
ACGTCTGTGTCATACCTCTCTGTCATACATCTTCAAGTGCCTTGGTGAAA
TCAATCACCGTTGACCTCATTTCTTGAGTCGCGCATGAGATGCTGTTTTG
CCCACCGAGTATTCACCCGTTGAAACTCGTTAAATTTTGATGTATTGCAT
TACCGTTGCAAGAGAGAGGCGCAAAAGGTCGAAGCAAGAGGAGTGCTGCG
ATACGCAAGCACACCTTGACACATTGGTGCCCCGTATGTCTTTACACGGT
GCGACGTGAACCGTCAAGTCGATATTTCCAACCTCAACGAATACGAGATT
CATTCCATTCTTTGTAACATGTTCCCTTTTGTGAGGCCATGAAGTTAATG
AGGGCCCATTCCCTTGCTCCTGTCTTTGGCAACAGAAAAATGAACACGAC
GAGGAATTAGCAAGGTGCCAGTCTCTCGTTTCCGCGACTATATTGTAGGA
AGGTCTAAAAGGTTCACGTCAAATGTGTTGTTTCCTCCTCTATTTGCGCG
GAGGGCATCGCAAGGGTACGTGAACCCCGTTGCTGATGATCCTCGTTCCT
AAGATCGTTCCCCTCTTTTTTGGTGATTGGTGAGAGATCGCAGAGTTCTC
CCGTTGCCGAAGATTACGAAGAGCGAAGCACATGGAACATTATTTTTTCC
TCATTCTGTTCCTGGCTATCATCCCGACGTGGCGGCGGACGGGGAGGGAA
AATCGATCACCCATCGAATAGTTTTGCGTGCCCCCCCCCCCCGTGGGAAA
GAAGGTGGTACGATGTGGGGTACCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9090:4389..5417+

>mRNA_Ecto-sp9_F_contig9090.17274.1 ID=mRNA_Ecto-sp9_F_contig9090.17274.1|Name=mRNA_Ecto-sp9_F_contig9090.17274.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9090:4389..5417+ (Ectocarpus species9 EcSCA_722f female)
ATGCCAAATTCGATGCCAAATTCGAGTTCTCCCGTTGCCGAAGATTACGA
AGAGCGAAGCACATGGAACATTATTTTTTCCTCATTCTGTTCCTGGCTAT
CATCCCGACGTGGCGGCGGACGGGGAGGGAAAATCGATCACCCATCGAAT
AGTTTTGCGTGCCCCCCCCCCCCGTGGGAAAGAAGGTGGTACGATGTGGG
GTACCGGTGAAGTTCTCCCGTTGCCGAAGATTACGAAGAGCGAAGCACAT
GGAACATTATTTTTTCCTCATTCTGTTCCTGGCTATCATCCCGACGTGGC
GGCGGACGGGGAGGGAAAATCGATCACCCATCGAATAGTTTTGCGTGCCC
CCCCCCCCCGTGGGAAAGAAGGTGGTACGATGTGGGGTACCGGTGA
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