mRNA_Ecto-sp9_F_contig903.17224.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 679 bits (1753), Expect = 8.360e-247 Identity = 332/343 (96.79%), Postives = 340/343 (99.13%), Query Frame = 1
Query: 1 MAMFVSAELPVALTELIAPEIHDLETLPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 1029
M +FVSAELPVALTELI PEI+DLETLPAITKDATCVDWAAWIPPRS+PAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLE+G+VDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPN+QWKEWGSTLCMGF+LFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLG+SNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQT VVAHCYFPQKEAGVKTSWMKKANLWSVQDDP
Sbjct: 1 MVIFVSAELPVALTELIDPEIYDLETLPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 343
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE) HSP 1 Score: 536 bits (1382), Expect = 3.120e-190 Identity = 274/346 (79.19%), Postives = 282/346 (81.50%), Query Frame = 1
Query: 151 VVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQ-----------------------------------------------------ISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 1029
+ + VVSEGYIDIERNFIRLMERNSGFTR NIYLMCMD ASKNFFD KMGIRCVPMSALDLPTH+ IWQLRV+VVSCLLEVGHVDVIMSDADALWLADPAKDLFSRG GGRGDI+ASRGSWPNEQ KEWGSTLCMGF++FRARNVAGMKRFLDVMADLVVQNKDDQ ISVNRAAKQLGIVWDKNSDMRYEESTGYGRG+IAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRV LLPHSAYTR CGRRTLSNQT VVAHCYFPQKEAGVKTSWMKKANLWSVQDDP
Sbjct: 1 MTVPVVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLPTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKNSDMRYEESTGYGRGVIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVILLPHSAYTRRCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 346
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 315 bits (808), Expect = 1.980e-103 Identity = 170/311 (54.66%), Postives = 203/311 (65.27%), Query Frame = 1
Query: 79 LPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLW 1011
LPAIT ATC DW WIPPRS PA+VMQVVS Y+++ERNFIRLME NS TR ++YLMCMD+ S +FF++ M IRC+P++A D P+H IW LR RVVSCL+E G DVIMSDADALWL DP KD F+ +VASRG +P EWG+T+CMGFVLFRA + FL+VM LV +NKDDQISVN AA+ LGIVWD+ SDMRY ES +G G I L NN PF VTLLPH+AYTR+C +SN+T VVAHC+ P K A KT WM ++ LW
Sbjct: 35 LPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQ-DVIMSDADALWLDDPFKD-FNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQ----------------------------PFSVTLLPHNAYTRVCDETPISNKT-VVAHCWAP-KTADSKTGWMVQSKLW 313
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE) HSP 1 Score: 245 bits (625), Expect = 1.950e-75 Identity = 143/318 (44.97%), Postives = 185/318 (58.18%), Query Frame = 1
Query: 76 TLPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHE-HIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
TLP ITKD++C D AW+PPRS PAVV QVVSE Y +E NFI ME +S F+R N+YL+C+D+ S FD +GIRCV L P +W LRV CLL G DV+MSDADA+WL DP D F+ ++VASR P + +WG+T+CMGF FRA A M+ F+ V+ ++V + DDQ +VN A +LG+VWD SDM + ST G G+I N T+ G P +VTLLPH+ YTR C R +SN T +VAHC K G+ T WMK+A+LW++ DD
Sbjct: 60 TLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQ-DVLMSDADAIWLRDPTND-FASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSA-MQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVI------ENITANG-----------------------DPLKVTLLPHNKYTRSCRRTPISNDT-IVAHCVSSDKGEGMAT-WMKEAHLWNLPDD 342
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Acetyltransferase ((Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 241 bits (615), Expect = 5.280e-73 Identity = 143/320 (44.69%), Postives = 186/320 (58.13%), Query Frame = 1
Query: 76 TLPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHE-HIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRG--DGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
TLP ITKD++C D AW+PPRS PAVV QVVSE Y +E NFI ME +S F+R N+YL+C+D+ S FD +GIRCV L P IW LR+ V CLL G DV+MSDADA+WL DP DL S D ++VASR P + +WG+T+CMGF FRA A M+ F+ V+ ++ + +DQI+VN A +L +VWD SDM + ++T G G+I N T GG +VTLLPH+ YTR C R +SN T +VAHC K G+ T WMK+A+LW++ DD
Sbjct: 135 TLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQ-DVLMSDADAIWLRDPTDDLASDAFLDS---NVVASRAVMPFPLYHKWGATICMGFAFFRAGGSA-MQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVI------ENITVDGG-----------------------SLKVTLLPHNKYTRSCRRTPISNDT-IVAHCVSSDKGEGMAT-WMKEAHLWNLPDD 417
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI) HSP 1 Score: 239 bits (610), Expect = 1.700e-72 Identity = 135/318 (42.45%), Postives = 193/318 (60.69%), Query Frame = 1
Query: 76 TLPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLP-THEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
TL AI++ A+C D AW+PP+ QPAVV QVVS+ Y+ +++NFI ME +S F+R N+YL+C+D+ S F +GIRCV + P + H+W LR+ V CLL+ G +DV+MSDADA+WL DP D F D IVASRG+ P ++ WG+T+CMGFVLFRA + A + +F++V+ + + ++DQ +VN A ++L +VWD SDM + +ST G G++ + S + T V+LLPH+ YTR C R +S +T VVAHC K G+ T WMK+A+LW+V DD
Sbjct: 118 TLLAISRHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGA-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLHDPMDD-FDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNA-IYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVVNSIYSGESLT------------------------------VSLLPHNKYTRSCRRTPISVET-VVAHCISTDKGEGMAT-WMKEAHLWNVPDD 399
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI) HSP 1 Score: 188 bits (478), Expect = 1.110e-54 Identity = 129/326 (39.57%), Postives = 156/326 (47.85%), Query Frame = 1
Query: 58 EIHDLETLPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFR--ARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDK-NSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
++ LE LPAI+ +A C DWAAW+PP S P VVMQV E GH DV+MSDADALWLADP KD G G IVASRGS+P E WG+T+CMGF+LFR A VA M+ F+ VM LV++ KDDQI+VN AA+ LGIVW++ +SDMRY ESTG+G G I L +N PF VTLLPHSAYTR+C +SN T VVAHC K K WM + +LW+V +D
Sbjct: 29 DLLPLEPLPAISPEAVCADWAAWVPPMSGPTVVMQV--------------------------------------------------------------------------EAGH-DVMMSDADALWLADPMKDFSLPGVVGS-SIVASRGSFPGEVGHVWGATICMGFILFRTTASRVA-MREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQ----------------------------PFTVTLLPHSAYTRICASTPVSNTT-VVAHC-ISSKTPQSKADWMHRMDLWAVDED 247
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 168 bits (425), Expect = 5.690e-48 Identity = 88/150 (58.67%), Postives = 109/150 (72.67%), Query Frame = 1
Query: 211 MERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRAR-NVAGMKRFLDVMADLVVQNKDDQISV 657
ME + FTR ++YLMC+DD S +FF++ MGI C+P+S L++ +HE IW LRVRVVSCL E GH DVIMSDADALWLADP KD FS IVASRG P E K WG+T+CMGF+LFRA N M +F+ VM LV +++DDQI+V
Sbjct: 1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGLNISSHEQIWVLRVRVVSCLAEAGH-DVIMSDADALWLADPMKD-FSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSD8_9PHAE) HSP 1 Score: 103 bits (258), Expect = 2.780e-24 Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 1
Query: 1 MAMFVSAELPVALTELIAPEIHDLETLPAITKDATCVDWAAWIPPRSQPAVVMQV 165
M MFVSAELP ALTE APEIHDLETLPAITKDATCVDWAAW+PPRSQPAVVMQV
Sbjct: 1 MVMFVSAELPEALTEYTAPEIHDLETLPAITKDATCVDWAAWVPPRSQPAVVMQV 55
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Beta-arabinofuranosyltransferase (RAY1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8L5_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 5.530e-10 Identity = 59/188 (31.38%), Postives = 91/188 (48.40%), Query Frame = 1
Query: 142 QPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRC-VPMSA----------LDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKD--LFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRA 666
+P V+ VS Y N++ MER + ++C+D + + + GI C +P A L++ +W +R+ + +L G V++SD+DA+W + L R GDIVASRG +P + + WG+TLCMG V FRA V + L+ + VQ DDQI +N A
Sbjct: 101 EPVAVLTYVSYSYKATLLNWMVAMERAKV---PGVGVVCLDQDLRAYLRER-GIPCYMPAQAPSGGGSKKGQLNVKAISKLWIMRLVHLLDVLRSGK-SVVLSDSDAIWAENAIASGILHERS----GDIVASRGQYPWDVAENWGATLCMGVVYFRA--VPSVVSMLENALEEAVQANDDQIGLNNA 277 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig903.17224.1 >prot_Ecto-sp9_F_contig903.17224.1 ID=prot_Ecto-sp9_F_contig903.17224.1|Name=mRNA_Ecto-sp9_F_contig903.17224.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=344bp MAMFVSAELPVALTELIAPEIHDLETLPAITKDATCVDWAAWIPPRSQPAback to top mRNA from alignment at Ecto-sp9_F_contig903:25367..27611+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig903.17224.1 ID=mRNA_Ecto-sp9_F_contig903.17224.1|Name=mRNA_Ecto-sp9_F_contig903.17224.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2245bp|location=Sequence derived from alignment at Ecto-sp9_F_contig903:25367..27611+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig903:25367..27611+ >mRNA_Ecto-sp9_F_contig903.17224.1 ID=mRNA_Ecto-sp9_F_contig903.17224.1|Name=mRNA_Ecto-sp9_F_contig903.17224.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2064bp|location=Sequence derived from alignment at Ecto-sp9_F_contig903:25367..27611+ (Ectocarpus species9 EcSCA_722f female)back to top |