mRNA_Ecto-sp9_F_contig903.17224.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig903.17224.1
Unique NamemRNA_Ecto-sp9_F_contig903.17224.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI)

HSP 1 Score: 679 bits (1753), Expect = 8.360e-247
Identity = 332/343 (96.79%), Postives = 340/343 (99.13%), Query Frame = 1
Query:    1 MAMFVSAELPVALTELIAPEIHDLETLPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 1029
            M +FVSAELPVALTELI PEI+DLETLPAITKDATCVDWAAWIPPRS+PAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLE+G+VDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPN+QWKEWGSTLCMGF+LFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLG+SNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQT VVAHCYFPQKEAGVKTSWMKKANLWSVQDDP
Sbjct:    1 MVIFVSAELPVALTELIDPEIYDLETLPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 343          
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE)

HSP 1 Score: 536 bits (1382), Expect = 3.120e-190
Identity = 274/346 (79.19%), Postives = 282/346 (81.50%), Query Frame = 1
Query:  151 VVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQ-----------------------------------------------------ISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 1029
            + + VVSEGYIDIERNFIRLMERNSGFTR NIYLMCMD ASKNFFD KMGIRCVPMSALDLPTH+ IWQLRV+VVSCLLEVGHVDVIMSDADALWLADPAKDLFSRG GGRGDI+ASRGSWPNEQ KEWGSTLCMGF++FRARNVAGMKRFLDVMADLVVQNKDDQ                                                     ISVNRAAKQLGIVWDKNSDMRYEESTGYGRG+IAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRV LLPHSAYTR CGRRTLSNQT VVAHCYFPQKEAGVKTSWMKKANLWSVQDDP
Sbjct:    1 MTVPVVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLPTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKNSDMRYEESTGYGRGVIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVILLPHSAYTRRCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP 346          
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 1.980e-103
Identity = 170/311 (54.66%), Postives = 203/311 (65.27%), Query Frame = 1
Query:   79 LPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLW 1011
            LPAIT  ATC DW  WIPPRS PA+VMQVVS  Y+++ERNFIRLME NS  TR ++YLMCMD+ S +FF++ M IRC+P++A D P+H  IW LR RVVSCL+E G  DVIMSDADALWL DP KD F+        +VASRG +P     EWG+T+CMGFVLFRA     +  FL+VM  LV +NKDDQISVN AA+ LGIVWD+ SDMRY ES  +G G I  L   NN                             PF VTLLPH+AYTR+C    +SN+T VVAHC+ P K A  KT WM ++ LW
Sbjct:   35 LPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQ-DVIMSDADALWLDDPFKD-FNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQ----------------------------PFSVTLLPHNAYTRVCDETPISNKT-VVAHCWAP-KTADSKTGWMVQSKLW 313          
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.950e-75
Identity = 143/318 (44.97%), Postives = 185/318 (58.18%), Query Frame = 1
Query:   76 TLPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHE-HIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
            TLP ITKD++C D  AW+PPRS PAVV QVVSE Y  +E NFI  ME +S F+R N+YL+C+D+ S   FD  +GIRCV    L  P     +W LRV    CLL  G  DV+MSDADA+WL DP  D F+       ++VASR   P   + +WG+T+CMGF  FRA   A M+ F+ V+ ++V +  DDQ +VN A  +LG+VWD  SDM +  ST  G G+I       N T+ G                        P +VTLLPH+ YTR C R  +SN T +VAHC    K  G+ T WMK+A+LW++ DD
Sbjct:   60 TLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQ-DVLMSDADAIWLRDPTND-FASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSA-MQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVI------ENITANG-----------------------DPLKVTLLPHNKYTRSCRRTPISNDT-IVAHCVSSDKGEGMAT-WMKEAHLWNLPDD 342          
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Acetyltransferase ((Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 5.280e-73
Identity = 143/320 (44.69%), Postives = 186/320 (58.13%), Query Frame = 1
Query:   76 TLPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHE-HIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRG--DGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
            TLP ITKD++C D  AW+PPRS PAVV QVVSE Y  +E NFI  ME +S F+R N+YL+C+D+ S   FD  +GIRCV    L  P     IW LR+ V  CLL  G  DV+MSDADA+WL DP  DL S    D    ++VASR   P   + +WG+T+CMGF  FRA   A M+ F+ V+ ++  +  +DQI+VN A  +L +VWD  SDM + ++T  G G+I       N T  GG                         +VTLLPH+ YTR C R  +SN T +VAHC    K  G+ T WMK+A+LW++ DD
Sbjct:  135 TLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQ-DVLMSDADAIWLRDPTDDLASDAFLDS---NVVASRAVMPFPLYHKWGATICMGFAFFRAGGSA-MQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVI------ENITVDGG-----------------------SLKVTLLPHNKYTRSCRRTPISNDT-IVAHCVSSDKGEGMAT-WMKEAHLWNLPDD 417          
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 1.700e-72
Identity = 135/318 (42.45%), Postives = 193/318 (60.69%), Query Frame = 1
Query:   76 TLPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLP-THEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
            TL AI++ A+C D  AW+PP+ QPAVV QVVS+ Y+ +++NFI  ME +S F+R N+YL+C+D+ S   F   +GIRCV    +  P +  H+W LR+ V  CLL+ G +DV+MSDADA+WL DP  D F   D     IVASRG+ P   ++ WG+T+CMGFVLFRA + A + +F++V+ +   + ++DQ +VN A ++L +VWD  SDM + +ST  G G++  + S  + T                              V+LLPH+ YTR C R  +S +T VVAHC    K  G+ T WMK+A+LW+V DD
Sbjct:  118 TLLAISRHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGA-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLHDPMDD-FDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNA-IYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVVNSIYSGESLT------------------------------VSLLPHNKYTRSCRRTPISVET-VVAHCISTDKGEGMAT-WMKEAHLWNVPDD 399          
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.110e-54
Identity = 129/326 (39.57%), Postives = 156/326 (47.85%), Query Frame = 1
Query:   58 EIHDLETLPAITKDATCVDWAAWIPPRSQPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFR--ARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDK-NSDMRYEESTGYGRGIIAGLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 1026
            ++  LE LPAI+ +A C DWAAW+PP S P VVMQV                                                                          E GH DV+MSDADALWLADP KD    G  G   IVASRGS+P E    WG+T+CMGF+LFR  A  VA M+ F+ VM  LV++ KDDQI+VN AA+ LGIVW++ +SDMRY ESTG+G G I  L   +N                             PF VTLLPHSAYTR+C    +SN T VVAHC    K    K  WM + +LW+V +D
Sbjct:   29 DLLPLEPLPAISPEAVCADWAAWVPPMSGPTVVMQV--------------------------------------------------------------------------EAGH-DVMMSDADALWLADPMKDFSLPGVVGS-SIVASRGSFPGEVGHVWGATICMGFILFRTTASRVA-MREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQ----------------------------PFTVTLLPHSAYTRICASTPVSNTT-VVAHC-ISSKTPQSKADWMHRMDLWAVDED 247          
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Nucleotid_trans (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 5.690e-48
Identity = 88/150 (58.67%), Postives = 109/150 (72.67%), Query Frame = 1
Query:  211 MERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRAR-NVAGMKRFLDVMADLVVQNKDDQISV 657
            ME  + FTR ++YLMC+DD S +FF++ MGI C+P+S L++ +HE IW LRVRVVSCL E GH DVIMSDADALWLADP KD FS        IVASRG  P E  K WG+T+CMGF+LFRA  N   M +F+ VM  LV +++DDQI+V
Sbjct:    1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGLNISSHEQIWVLRVRVVSCLAEAGH-DVIMSDADALWLADPMKD-FSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148          
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSD8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.780e-24
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    1 MAMFVSAELPVALTELIAPEIHDLETLPAITKDATCVDWAAWIPPRSQPAVVMQV 165
            M MFVSAELP ALTE  APEIHDLETLPAITKDATCVDWAAW+PPRSQPAVVMQV
Sbjct:    1 MVMFVSAELPEALTEYTAPEIHDLETLPAITKDATCVDWAAWVPPRSQPAVVMQV 55          
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Match: Beta-arabinofuranosyltransferase (RAY1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8L5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.530e-10
Identity = 59/188 (31.38%), Postives = 91/188 (48.40%), Query Frame = 1
Query:  142 QPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRC-VPMSA----------LDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPAKD--LFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKRFLDVMADLVVQNKDDQISVNRA 666
            +P  V+  VS  Y     N++  MER        + ++C+D   + +   + GI C +P  A          L++     +W +R+  +  +L  G   V++SD+DA+W  +      L  R     GDIVASRG +P +  + WG+TLCMG V FRA  V  +   L+   +  VQ  DDQI +N A
Sbjct:  101 EPVAVLTYVSYSYKATLLNWMVAMERAKV---PGVGVVCLDQDLRAYLRER-GIPCYMPAQAPSGGGSKKGQLNVKAISKLWIMRLVHLLDVLRSGK-SVVLSDSDAIWAENAIASGILHERS----GDIVASRGQYPWDVAENWGATLCMGVVYFRA--VPSVVSMLENALEEAVQANDDQIGLNNA 277          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig903.17224.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Nucleotid_trans8.360e-24796.79domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Nucleotid_trans3.120e-19079.19domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Nucleotid_trans1.980e-10354.66domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Nucleotid_trans1.950e-7544.97domain-containing protein n=2 Tax=Ectocarpus sp. C... [more]
Acetyltransferase5.280e-7344.69(Isoleucine patch superfamily protein) n=1 Tax=Ect... [more]
Nucleotid_trans1.700e-7242.45domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Nucleotid_trans1.110e-5439.57domain-containing protein n=2 Tax=Ectocarpus silic... [more]
Nucleotid_trans5.690e-4858.67domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized2.780e-2490.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Beta-arabinofuranosyltransferase5.530e-1031.38RAY1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig903contigEcto-sp9_F_contig903:25367..27611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score681.4
Seed ortholog evalue2.2e-193
Seed eggNOG ortholog2880.D8LK17
EggNOG free text desc.Nucleotide-diphospho-sugar transferase
EggNOG OGs2C6NG@1,2SGR5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferase
Ec32 orthologEc-06_007830.1
Exons4
Model size1032
Cds size1032
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig903.17224.1prot_Ecto-sp9_F_contig903.17224.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig903 25367..27611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930969.3852623-CDS-Ecto-sp9_F_contig903:25366..255281622930969.3852623-CDS-Ecto-sp9_F_contig903:25366..25528Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig903 25367..25528 +
1692278972.8669114-CDS-Ecto-sp9_F_contig903:25366..255281692278972.8669114-CDS-Ecto-sp9_F_contig903:25366..25528Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig903 25367..25528 +
1622930969.4031875-CDS-Ecto-sp9_F_contig903:25882..260821622930969.4031875-CDS-Ecto-sp9_F_contig903:25882..26082Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig903 25883..26082 +
1692278972.8793898-CDS-Ecto-sp9_F_contig903:25882..260821692278972.8793898-CDS-Ecto-sp9_F_contig903:25882..26082Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig903 25883..26082 +
1622930969.4644403-CDS-Ecto-sp9_F_contig903:26467..267531622930969.4644403-CDS-Ecto-sp9_F_contig903:26467..26753Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig903 26468..26753 +
1692278972.8897028-CDS-Ecto-sp9_F_contig903:26467..267531692278972.8897028-CDS-Ecto-sp9_F_contig903:26467..26753Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig903 26468..26753 +
1622930969.544768-CDS-Ecto-sp9_F_contig903:27227..276111622930969.544768-CDS-Ecto-sp9_F_contig903:27227..27611Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig903 27228..27611 +
1692278972.90882-CDS-Ecto-sp9_F_contig903:27227..276111692278972.90882-CDS-Ecto-sp9_F_contig903:27227..27611Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig903 27228..27611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig903.17224.1

>prot_Ecto-sp9_F_contig903.17224.1 ID=prot_Ecto-sp9_F_contig903.17224.1|Name=mRNA_Ecto-sp9_F_contig903.17224.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=344bp
MAMFVSAELPVALTELIAPEIHDLETLPAITKDATCVDWAAWIPPRSQPA
VVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMG
IRCVPMSALDLPTHEHIWQLRVRVVSCLLEVGHVDVIMSDADALWLADPA
KDLFSRGDGGRGDIVASRGSWPNEQWKEWGSTLCMGFVLFRARNVAGMKR
FLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIA
GLGSSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTR
LCGRRTLSNQTMVVAHCYFPQKEAGVKTSWMKKANLWSVQDDP*
back to top

mRNA from alignment at Ecto-sp9_F_contig903:25367..27611+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig903.17224.1 ID=mRNA_Ecto-sp9_F_contig903.17224.1|Name=mRNA_Ecto-sp9_F_contig903.17224.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2245bp|location=Sequence derived from alignment at Ecto-sp9_F_contig903:25367..27611+ (Ectocarpus species9 EcSCA_722f female)
ATGGCTATGTTTGTGTCGGCCGAGCTGCCGGTAGCGTTGACTGAGCTTAT CGCCCCAGAAATCCACGACTTGGAAACACTGCCGGCGATAACGAAGGATG CCACCTGTGTGGATTGGGCAGCGTGGATACCTCCGCGATCGCAACCGGCC GTGGTGATGCAGGTAGATCACATACACAGTATGCGCTGCTGTCGTTGTTG AATATCACCTGCCCCCCCGTTCCCTTGGCAGCATTGTCTGGGCAAGCGGA GGCAATATGAAATGACCTCATCGCCTGCCCGACACAGCTCCTTAGAACAA GAACGCCTGTTTCAGCGGGCACGTGTTGATTTGAGGCAATGGGTTGTTGT AGCGGGTGGCACCCAGCACTACCAGCCTACCGCCCCTCGCATTCACTTCA AACCCCGTGCTGGTGCTTCATTAGCGGTAGTGGCAGGTCGAGTGTGATGA TGATGTCAACCAATATACAGAATTTCGTTTTTGGGTTTCCTACATCAAAA CCACGTCTGCGTGTAGGTGGTGAGCGAGGGCTATATTGATATCGAGCGGA ACTTCATCCGACTGATGGAGAGGAACTCGGGCTTCACACGCCGCAACATC TACCTCATGTGCATGGACGATGCATCCAAGAACTTTTTCGACACGAAAAT GGGGATTCGCTGCGTACCTATGAGCGCATTGGACCTGCCCACGCATGAAC ACATCTGGCAACTCAGGTATTAAAACGATGGTAGCTTCTCTATACATGCG TAATAAGGGTCCAGGTTTGGTTTAGGCATTGATTTGTTGTCTCTCTCTAT ATATATATCTCGCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCCCCCCCCCCCTCTTTTTCTTCCTATCTCCCCCTCTCT CTCTCTCTCTCTCTCTCTCTGCATATACCTCTCTCTCCGGCACACACAGG TTTGAATCATGTCCGCTCCTCGTTTGTCTCTTCCCTCCAGACAACTGTCC TCGCTTCTTGTGCTTGTCTCTTCACTTGACGTTCATACTCCGGGACTCAA CGACGTTCTAACTCTCTCTTTCCTGCCTACGAAATATTCCTTTTTTTTCA GGGTAAGGGTAGTTTCATGCCTCCTAGAGGTTGGACACGTGGACGTGATC ATGAGCGACGCGGATGCCCTCTGGCTCGCCGACCCGGCAAAAGACCTGTT CAGCAGAGGCGACGGTGGCAGGGGAGACATCGTAGCCTCGCGCGGCAGCT GGCCGAACGAGCAGTGGAAGGAGTGGGGCTCGACCCTCTGCATGGGGTTC GTCTTGTTCCGCGCGCGGAACGTTGCGGGGATGAAGAGGTTCCTCGACGT CATGGCGGACCTCGTGGTGCAGAACAAGGACGACCAGGTGAAAAGTTTTC GAACACGCTTGCGTTCGTCTATTGTTGTAATATGGCATTTGCTTCAGAAT AAGAACAACGTTTTTTCTGCGTGACCCAGAGGCGGGGCTCTTAGGCAAGA GCGGCAGGACATATGGAGTAGACCTATTAACTGCAAACAACGGTCGATGA GCGGACCAACCAGGACCACTTTTTGGCTGAAAAGTTTCGTAGCGCTGTAT GCCTGTCAACAAGAGCGCGACAACTAGGGGGGGGGGGGTCACGTTTTTCG TGCATCTGGTACGTTGCTTCTCCGTTCACAGATGCTGTGTGAGTGTGCAG CGATGCGGAGACGGTCACGGGCGTTGAAAACGATTTCTGCGGTTTGCCTG CAAGTTCTCGTTCGCGATCAAATCCAACACTTACGGAAAGAGCGTTCTGC GCCACGGTGCTGCGCCCCCCCGCCCCCCTCTTTTATCTTTTCGGTTGTTT CGGCTGAGAAGATTTCGGTCAATCGAGCCGCGAAACAGCTGGGAATCGTG TGGGATAAGAACAGCGACATGAGATACGAGGAGAGCACGGGCTACGGCAG GGGGATCATCGCCGGCCTCGGCAGCAGCAACAACAGCACTAGCGGCGGTG GTGGCGATCTTTTCATTGGGCAAACAGGCCACGGCGTTGTCGTCGGCAGA GGGACACGGGAAGTAGAGGCACCATTCAGGGTGACCTTGCTCCCCCACAG CGCGTACACGAGGCTCTGCGGTAGAAGGACGCTCTCGAACCAGACGATGG TGGTAGCTCACTGCTACTTCCCCCAAAAGGAGGCGGGCGTCAAGACTTCC TGGATGAAGAAGGCCAATCTGTGGTCGGTGCAGGACGATCCCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig903:25367..27611+

>mRNA_Ecto-sp9_F_contig903.17224.1 ID=mRNA_Ecto-sp9_F_contig903.17224.1|Name=mRNA_Ecto-sp9_F_contig903.17224.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2064bp|location=Sequence derived from alignment at Ecto-sp9_F_contig903:25367..27611+ (Ectocarpus species9 EcSCA_722f female)
ATGGCTATGTTTGTGTCGGCCGAGCTGCCGGTAGCGTTGACTGAGCTTAT
CGCCCCAGAAATCCACGACTTGGAAACACTGCCGGCGATAACGAAGGATG
CCACCTGTGTGGATTGGGCAGCGTGGATACCTCCGCGATCGCAACCGGCC
GTGGTGATGCAGATGGCTATGTTTGTGTCGGCCGAGCTGCCGGTAGCGTT
GACTGAGCTTATCGCCCCAGAAATCCACGACTTGGAAACACTGCCGGCGA
TAACGAAGGATGCCACCTGTGTGGATTGGGCAGCGTGGATACCTCCGCGA
TCGCAACCGGCCGTGGTGATGCAGGTGGTGAGCGAGGGCTATATTGATAT
CGAGCGGAACTTCATCCGACTGATGGAGAGGAACTCGGGCTTCACACGCC
GCAACATCTACCTCATGTGCATGGACGATGCATCCAAGAACTTTTTCGAC
ACGAAAATGGGGATTCGCTGCGTACCTATGAGCGCATTGGACCTGCCCAC
GCATGAACACATCTGGCAACTCAGGTGGTGAGCGAGGGCTATATTGATAT
CGAGCGGAACTTCATCCGACTGATGGAGAGGAACTCGGGCTTCACACGCC
GCAACATCTACCTCATGTGCATGGACGATGCATCCAAGAACTTTTTCGAC
ACGAAAATGGGGATTCGCTGCGTACCTATGAGCGCATTGGACCTGCCCAC
GCATGAACACATCTGGCAACTCAGGGTAAGGGTAGTTTCATGCCTCCTAG
AGGTTGGACACGTGGACGTGATCATGAGCGACGCGGATGCCCTCTGGCTC
GCCGACCCGGCAAAAGACCTGTTCAGCAGAGGCGACGGTGGCAGGGGAGA
CATCGTAGCCTCGCGCGGCAGCTGGCCGAACGAGCAGTGGAAGGAGTGGG
GCTCGACCCTCTGCATGGGGTTCGTCTTGTTCCGCGCGCGGAACGTTGCG
GGGATGAAGAGGTTCCTCGACGTCATGGCGGACCTCGTGGTGCAGAACAA
GGACGACCAGGGTAAGGGTAGTTTCATGCCTCCTAGAGGTTGGACACGTG
GACGTGATCATGAGCGACGCGGATGCCCTCTGGCTCGCCGACCCGGCAAA
AGACCTGTTCAGCAGAGGCGACGGTGGCAGGGGAGACATCGTAGCCTCGC
GCGGCAGCTGGCCGAACGAGCAGTGGAAGGAGTGGGGCTCGACCCTCTGC
ATGGGGTTCGTCTTGTTCCGCGCGCGGAACGTTGCGGGGATGAAGAGGTT
CCTCGACGTCATGGCGGACCTCGTGGTGCAGAACAAGGACGACCAGATTT
CGGTCAATCGAGCCGCGAAACAGCTGGGAATCGTGTGGGATAAGAACAGC
GACATGAGATACGAGGAGAGCACGGGCTACGGCAGGGGGATCATCGCCGG
CCTCGGCAGCAGCAACAACAGCACTAGCGGCGGTGGTGGCGATCTTTTCA
TTGGGCAAACAGGCCACGGCGTTGTCGTCGGCAGAGGGACACGGGAAGTA
GAGGCACCATTCAGGGTGACCTTGCTCCCCCACAGCGCGTACACGAGGCT
CTGCGGTAGAAGGACGCTCTCGAACCAGACGATGGTGGTAGCTCACTGCT
ACTTCCCCCAAAAGGAGGCGGGCGTCAAGACTTCCTGGATGAAGAAGGCC
AATCTGTGGTCGGTGCAGGACGATCCCTGAATTTCGGTCAATCGAGCCGC
GAAACAGCTGGGAATCGTGTGGGATAAGAACAGCGACATGAGATACGAGG
AGAGCACGGGCTACGGCAGGGGGATCATCGCCGGCCTCGGCAGCAGCAAC
AACAGCACTAGCGGCGGTGGTGGCGATCTTTTCATTGGGCAAACAGGCCA
CGGCGTTGTCGTCGGCAGAGGGACACGGGAAGTAGAGGCACCATTCAGGG
TGACCTTGCTCCCCCACAGCGCGTACACGAGGCTCTGCGGTAGAAGGACG
CTCTCGAACCAGACGATGGTGGTAGCTCACTGCTACTTCCCCCAAAAGGA
GGCGGGCGTCAAGACTTCCTGGATGAAGAAGGCCAATCTGTGGTCGGTGC
AGGACGATCCCTGA
back to top