mRNA_Ecto-sp9_F_contig9010.17205.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9010.17205.1
Unique NamemRNA_Ecto-sp9_F_contig9010.17205.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9010.17205.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9010contigEcto-sp9_F_contig9010:344..2800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size721
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9010.17205.1prot_Ecto-sp9_F_contig9010.17205.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9010 1522..2768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.0835254-UTR-Ecto-sp9_F_contig9010:343..4111622930966.0835254-UTR-Ecto-sp9_F_contig9010:343..411Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9010 344..411 +
1692278971.384792-UTR-Ecto-sp9_F_contig9010:343..4111692278971.384792-UTR-Ecto-sp9_F_contig9010:343..411Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9010 344..411 +
1622930966.109653-UTR-Ecto-sp9_F_contig9010:1452..15211622930966.109653-UTR-Ecto-sp9_F_contig9010:1452..1521Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9010 1453..1521 +
1692278971.4009876-UTR-Ecto-sp9_F_contig9010:1452..15211692278971.4009876-UTR-Ecto-sp9_F_contig9010:1452..1521Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9010 1453..1521 +
1622930966.2008386-UTR-Ecto-sp9_F_contig9010:2768..28001622930966.2008386-UTR-Ecto-sp9_F_contig9010:2768..2800Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9010 2769..2800 +
1692278971.4481423-UTR-Ecto-sp9_F_contig9010:2768..28001692278971.4481423-UTR-Ecto-sp9_F_contig9010:2768..2800Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9010 2769..2800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.1308641-CDS-Ecto-sp9_F_contig9010:1521..15541622930966.1308641-CDS-Ecto-sp9_F_contig9010:1521..1554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9010 1522..1554 +
1692278971.4117854-CDS-Ecto-sp9_F_contig9010:1521..15541692278971.4117854-CDS-Ecto-sp9_F_contig9010:1521..1554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9010 1522..1554 +
1622930966.1541538-CDS-Ecto-sp9_F_contig9010:1896..23951622930966.1541538-CDS-Ecto-sp9_F_contig9010:1896..2395Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9010 1897..2395 +
1692278971.422829-CDS-Ecto-sp9_F_contig9010:1896..23951692278971.422829-CDS-Ecto-sp9_F_contig9010:1896..2395Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9010 1897..2395 +
1622930966.1755807-CDS-Ecto-sp9_F_contig9010:2748..27681622930966.1755807-CDS-Ecto-sp9_F_contig9010:2748..2768Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9010 2749..2768 +
1692278971.4339664-CDS-Ecto-sp9_F_contig9010:2748..27681692278971.4339664-CDS-Ecto-sp9_F_contig9010:2748..2768Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9010 2749..2768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9010.17205.1

>prot_Ecto-sp9_F_contig9010.17205.1 ID=prot_Ecto-sp9_F_contig9010.17205.1|Name=mRNA_Ecto-sp9_F_contig9010.17205.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=184bp
MVGRQTPTTPPDGTPTPEPFVDPAMVGDFGGGNHQKNTSKFVHGRGFKIP
KELTPMPRVESLGAFPGDVGSTIVMGSINVNLNSVSECEVDPSREHSASG
GEVSDSRTRLRDRGGSWRGVEQDPGLFISSSRMRVGSGNERGLGGGREGI
KMPRPKTANATLGREHTLHVYSTGVGGGFAALA*
back to top

mRNA from alignment at Ecto-sp9_F_contig9010:344..2800+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9010.17205.1 ID=mRNA_Ecto-sp9_F_contig9010.17205.1|Name=mRNA_Ecto-sp9_F_contig9010.17205.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2457bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9010:344..2800+ (Ectocarpus species9 EcSCA_722f female)
ATACACTAATCTGGCGCGGCTCCAACGCCCGCAGCAGACGCGATATACTG
CAGCACGATGTTCCCAAGGCGAGTTATGTCAAGAGGCTGGCCAACGGCAA
GATCATCATCAGGGTGGGCGTTTGTCGCTCTCGACGCGTATATGCACTGT
AGATCCGCGATCGATCGTGATGTGCAGCTATCCAACGGGTTCTACGCATA
CGATAACGCTGTAAGTGAGAATGCCTGCTCGTCGTGTCTCCCTGCCGTCT
GTCTATATCGCAGCATCGGAAGTGATGGGTCATTTCCCTTTGGCTATGCA
GCGAATCTATGTACTTGATATCTGGAGCCAGGTTCGCCTCTGCTTTGGGT
TGTTGTTGATGTAGCATACCAATTTCGTACTGGTGGTACAGCAGTAGCTC
GATGCGCGCACGGTAAATTGTGGCACATATACAATATATGTCACCCACCC
CTCGTATCTCTTCGCCTTAAGAGAACACAAATGAGAGTATTGGCGAGTAC
TTGCAGTACAAGAACGACTCTATTCTACTGCATGGGTTTGATGCTGTATT
GTGGGGAGTTGTCAAGTCTGCAACCGTTCAGGTGAAAGGCAGCTTGGGCG
TCTGTGTGTAGATAATGAAACACTCTGTATGTTTGCCCACCTACCTGACC
TCGCATCACATGGCAGCTACTTTGGAGCTACATCTGAGAGGATAGAGGTA
CAGCGATTGCGGTTACAGCACTGCTGTTATCTCAACACGGAGTGGTTTGA
GGGAGTTTGCTCCATGTACCATTGCTTCGATCTCTCCTCCCGTTGCACCA
CGAGTAGACCGTCATGTCTAAGTACCGAAGCGTGGACGTCGGTCTTCGGA
AAGCTCAAGCCTGACCTCGTCTGTATCGTGTGCGACTGTCCACCATTAGG
TGAAGCAGCCCAGGTAAGAAAGGGACTATTTTGCTGACCTGCATCTCGTT
TTCCACGTCAAGACAAACCCTTGACGAGAATTTGATTTCGTTCTGCTATC
ACGCACGGAAATGAAACGCGAGAACGGATCAATGATGAGCCGAGAGAGAT
GATATTTGCCCCCCTCTTCTTCCGCAATTCCCACATGCATGGTCCAACGT
CAAGCACAGGCTACTCTTGGTGACGCACGAGCAGCCCCATGGGAATCCCT
ACCACCACCCCAGGCAGTAAAGGGTGATATGGTGGGTCGGCAGACGCCAA
CGACACCACCGGTAAATGCGTGTTTGTTGCGTCGCTTAACTTCGCATGAT
GCCCCACGAGGGTTCAGTCCTCCTGCATTCGGAAGGACGACTAGATTAAG
ACCGAACGTTTCGTGGAATTGGCGGGTGTGGTATTTCATTGAATTGATCT
AGAAAAGGTGGTGCCGTTCTGCCAGACACAGCAATCCATTAGAGACAGTG
CAAGTATCTGTGCCAAAGAGTGGATATAATAGGGCCACAACTCCGCACAA
CTCCGACATGCTCGTCAAAACAACACAAACCTCGCGATAACGGTATTTGA
ATCCGTTGTTGACGTTTTCCCGCTGTGCGTGTACTCTACACCATCGACAC
AAGGATGGGACGCCTACCCCCGAACCATTCGTAGACCCCGCAATGGTGGG
AGATTTTGGGGGAGGGAATCATCAGAAAAACACGAGCAAGTTTGTACACG
GAAGAGGCTTTAAAATCCCCAAAGAACTCACGCCAATGCCTCGTGTCGAA
AGCCTGGGAGCCTTTCCGGGAGATGTTGGCAGCACAATTGTAATGGGCAG
CATCAACGTCAATTTGAACAGTGTGTCTGAGTGTGAGGTTGATCCCTCTC
GAGAACACAGCGCCAGCGGCGGGGAGGTAAGCGATAGTAGAACCAGACTC
AGAGATCGCGGGGGCAGTTGGCGAGGGGTCGAACAAGATCCCGGCTTGTT
TATCAGTAGCTCGAGGATGAGGGTTGGGAGTGGCAACGAGCGAGGATTGG
GCGGCGGGAGAGAGGGCATCAAAATGCCGAGACCAAAGACTGCAAACGCA
ACTCTGGGACGGGAGCATACTCTGCATGTATACTCCACTGGCGTGGGAGG
AGGTGCGCAACTTCTTTGTTCGGCTGAGAGGGGGGTGGGGGAGGGACAGA
GTGTGCCACCGGATGAGTTATTCAAGCTACAGCGGCATGCCTCGTTGAAA
TGCGTGTATTGATGGGCGTAAAAATCTTCGTGTGCTAGCTATGACTCGTG
CGGACGAATATATCTTGGTGACTCAATGAATCAAACTCTTTTCACCAGGG
ATCGAGGCGGCAATGAACACCCACCAGAGAATGCGCTACCCCCACCGCCG
CCTGTCTACCCCCCGCCGTACCCCCCTTGTGTCAAACTTGTGTCATGTGT
TTGCCTGAATCGTGGCGGTGGATGCACTCGTTGGATTCCTTCACGGTGGG
GCCAGGCTTCGCAGCTCTGGCCTAGTCAGCGATGGGGCGACAAGAGCTTC
ACCGACC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9010:344..2800+

>mRNA_Ecto-sp9_F_contig9010.17205.1 ID=mRNA_Ecto-sp9_F_contig9010.17205.1|Name=mRNA_Ecto-sp9_F_contig9010.17205.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1104bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9010:344..2800+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGGGTCGGCAGACGCCAACGACACCACCGATGGTGGGTCGGCAGAC
GCCAACGACACCACCGGATGGGACGCCTACCCCCGAACCATTCGTAGACC
CCGCAATGGTGGGAGATTTTGGGGGAGGGAATCATCAGAAAAACACGAGC
AAGTTTGTACACGGAAGAGGCTTTAAAATCCCCAAAGAACTCACGCCAAT
GCCTCGTGTCGAAAGCCTGGGAGCCTTTCCGGGAGATGTTGGCAGCACAA
TTGTAATGGGCAGCATCAACGTCAATTTGAACAGTGTGTCTGAGTGTGAG
GTTGATCCCTCTCGAGAACACAGCGCCAGCGGCGGGGAGGTAAGCGATAG
TAGAACCAGACTCAGAGATCGCGGGGGCAGTTGGCGAGGGGTCGAACAAG
ATCCCGGCTTGTTTATCAGTAGCTCGAGGATGAGGGTTGGGAGTGGCAAC
GAGCGAGGATTGGGCGGCGGGAGAGAGGGCATCAAAATGCCGAGACCAAA
GACTGCAAACGCAACTCTGGGACGGGAGCATACTCTGCATGTATACTCCA
CTGGCGTGGGAGGAGGATGGGACGCCTACCCCCGAACCATTCGTAGACCC
CGCAATGGTGGGAGATTTTGGGGGAGGGAATCATCAGAAAAACACGAGCA
AGTTTGTACACGGAAGAGGCTTTAAAATCCCCAAAGAACTCACGCCAATG
CCTCGTGTCGAAAGCCTGGGAGCCTTTCCGGGAGATGTTGGCAGCACAAT
TGTAATGGGCAGCATCAACGTCAATTTGAACAGTGTGTCTGAGTGTGAGG
TTGATCCCTCTCGAGAACACAGCGCCAGCGGCGGGGAGGTAAGCGATAGT
AGAACCAGACTCAGAGATCGCGGGGGCAGTTGGCGAGGGGTCGAACAAGA
TCCCGGCTTGTTTATCAGTAGCTCGAGGATGAGGGTTGGGAGTGGCAACG
AGCGAGGATTGGGCGGCGGGAGAGAGGGCATCAAAATGCCGAGACCAAAG
ACTGCAAACGCAACTCTGGGACGGGAGCATACTCTGCATGTATACTCCAC
TGGCGTGGGAGGAGGCTTCGCAGCTCTGGCCTAGGCTTCGCAGCTCTGGC
CTAG
back to top