mRNA_Ecto-sp9_F_contig8982.17178.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8982.17178.1
Unique NamemRNA_Ecto-sp9_F_contig8982.17178.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8982.17178.1 vs.
Match: Calcium (dependent protein kinase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK83_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.060e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:  163 MGNPVSKSQEFMEQRERSNTEYRKQGTLSMNLVREEFNRDIQEVYDLR 306
            MGNPVSKSQEFMEQRERSNTEYRKQGTLSMNLVREEFNRDIQEVYDLR
Sbjct:    1 MGNPVSKSQEFMEQRERSNTEYRKQGTLSMNLVREEFNRDIQEVYDLR 48
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BLAST of mRNA_Ecto-sp9_F_contig8982.17178.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.120e-19
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:  163 MGNPVSKSQEFMEQRERSNTEYRKQGTLSMNLVREEFNRDIQEVYDLR 306
            MGNPVSKSQ FMEQRERSNTEYRKQGTLSMNLVREEFNRDIQEVYDLR
Sbjct:    1 MGNPVSKSQAFMEQRERSNTEYRKQGTLSMNLVREEFNRDIQEVYDLR 48
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8982.17178.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Calcium1.060e-20100.00dependent protein kinase 4 n=1 Tax=Ectocarpus sili... [more]
Uncharacterized1.120e-1997.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8982contigEcto-sp9_F_contig8982:4567..5449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue3.4e-17
Seed eggNOG ortholog2880.D7FK83
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.233447-CDS-Ecto-sp9_F_contig8982:4566..46171622930959.233447-CDS-Ecto-sp9_F_contig8982:4566..4617Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8982 4567..4617 -
1692278967.6747634-CDS-Ecto-sp9_F_contig8982:4566..46171692278967.6747634-CDS-Ecto-sp9_F_contig8982:4566..4617Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8982 4567..4617 -
1622930959.2533703-CDS-Ecto-sp9_F_contig8982:5191..54491622930959.2533703-CDS-Ecto-sp9_F_contig8982:5191..5449Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8982 5192..5449 -
1692278967.6863582-CDS-Ecto-sp9_F_contig8982:5191..54491692278967.6863582-CDS-Ecto-sp9_F_contig8982:5191..5449Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8982 5192..5449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8982.17178.1prot_Ecto-sp9_F_contig8982.17178.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8982 4567..5449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8982.17178.1

>prot_Ecto-sp9_F_contig8982.17178.1 ID=prot_Ecto-sp9_F_contig8982.17178.1|Name=mRNA_Ecto-sp9_F_contig8982.17178.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
LFGTHSKRRPPQGTTTAVLPPALRLETGAFVLSLSSELHHPSRAGKGKSH
HRPIMGNPVSKSQEFMEQRERSNTEYRKQGTLSMNLVREEFNRDIQEVYD
LR*
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mRNA from alignment at Ecto-sp9_F_contig8982:4567..5449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8982.17178.1 ID=mRNA_Ecto-sp9_F_contig8982.17178.1|Name=mRNA_Ecto-sp9_F_contig8982.17178.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=883bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8982:4567..5449- (Ectocarpus species9 EcSCA_722f female)
TTGTTTGGCACGCACAGCAAGCGGAGACCGCCACAGGGCACGACGACTGC
TGTCCTTCCCCCTGCCCTGCGCTTGGAGACCGGGGCTTTTGTCTTGTCTC
TGTCGTCGGAATTGCACCACCCCTCTCGGGCGGGGAAGGGGAAATCACAC
CATCGGCCCATCATGGGCAACCCCGTGAGCAAGAGCCAGGAGTTCATGGA
GCAAAGAGAGAGAAGTAACACGGAGTACCGGAAGCAGGGAACCCTCTCTA
TGAACCTGGTAAGGCCGGAAAGTGTATTGCTGATGCTGCTCTCTCTCTCT
CCCTCCCTAACTCAGTTTTGTCACTTTTCCCGACAGTGAGAGGGGGGGCA
GGGCAACAGGGCGGCTGGTGTCGTCTAAGCCCCGCGCGTGAATCGGCGTC
TCGGTGGCGGTTGCTCCTCTTGTAGTCGCGCATGCTGGGGGAGAAGTTGG
CTTCGCTGCCGGAACCCTTTCGGAATACGCACACACCCTTCCTCACAGCA
AGTAACGAATAGTGTCGTCGCCCCCTTCTTTTTTCTTCATGAGACTTTTT
GTGGAGATTTTTGACCTGTTGGGGTCTCATCTTCACATGTCTACCTGCTG
CTGCTGATGGTATATATGGCAAAAGGCCTCCGTCTTCTTCATTTATTTTT
AGTCAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCCGCTCATAAATTGGCCCTGATGACGCTGCGCTGCCTC
TGCTAACAGGCCGTCTGCGACTGCTGCTGGGTTGTTGCTTGTGCTCAACT
CTCGTTTTTCTCCCCTCCCCTTCTCACCGCAGGTGCGAGAGGAATTCAAT
CGCGATATACAGGAGGTGTACGATCTGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8982:4567..5449-

>mRNA_Ecto-sp9_F_contig8982.17178.1 ID=mRNA_Ecto-sp9_F_contig8982.17178.1|Name=mRNA_Ecto-sp9_F_contig8982.17178.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8982:4567..5449- (Ectocarpus species9 EcSCA_722f female)
TTGTTTGGCACGCACAGCAAGCGGAGACCGCCACAGGGCACGACGACTGC
TGTCCTTCCCCCTGCCCTGCGCTTGGAGACCGGGGCTTTTGTCTTGTCTC
TGTCGTCGGAATTGCACCACCCCTCTCGGGCGGGGAAGGGGAAATCACAC
CATCGGCCCATCATGGGCAACCCCGTGAGCAAGAGCCAGGAGTTCATGGA
GCAAAGAGAGAGAAGTAACACGGAGTACCGGAAGCAGGGAACCCTCTCTA
TGAACCTGTTGTTTGGCACGCACAGCAAGCGGAGACCGCCACAGGGCACG
ACGACTGCTGTCCTTCCCCCTGCCCTGCGCTTGGAGACCGGGGCTTTTGT
CTTGTCTCTGTCGTCGGAATTGCACCACCCCTCTCGGGCGGGGAAGGGGA
AATCACACCATCGGCCCATCATGGGCAACCCCGTGAGCAAGAGCCAGGAG
TTCATGGAGCAAAGAGAGAGAAGTAACACGGAGTACCGGAAGCAGGGAAC
CCTCTCTATGAACCTGGTGCGAGAGGAATTCAATCGCGATATACAGGAGG
TGTACGATCTGAGGTGAGTGCGAGAGGAATTCAATCGCGATATACAGGAG
GTGTACGATCTGAGGTGA
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