mRNA_Ecto-sp9_F_contig8973.17165.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8973.17165.1
Unique NamemRNA_Ecto-sp9_F_contig8973.17165.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8973.17165.1 vs.
Match: FirrV-1-C2 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLX6_9PHYC)

HSP 1 Score: 255 bits (652), Expect = 4.010e-80
Identity = 130/275 (47.27%), Postives = 181/275 (65.82%), Query Frame = 1 
Query:    1 EMKDMCMAMQRDQEQKRKEEANDKHFLPDLASLFNTKTGVCAWCPINHTHH-NTSYEVVVLCMPLLLWFNGKARPDAMLPEIQTRAYFMQIQSHTEIPYQAFCAILEQTPFKPRQVDKQESWNRTNFLIVPLDEWKEMELRNEKTYPARHRTLSVARKKHQSFWHFGNNIAYTQCAPGDTSSGFSQAYNRTFTMEEKALIPSMGRTWTKEMLDKPVIRGFFDIPEELRGKCHIVGGKLQQETIQTHATAYAACRGNVELAMTKRLNRAKFRNTES 822
            E+KD     + +++    E+   K  +P LASLFNT+TGVCAW P+ HT     +++VVV+ + +L W++ K RPD  + E++   +FM I    +IPY+    +L +TPFKP Q+  +ES+N   F +V   EW+++E  N++ YP+R R L +A  K   F   GN +AY+Q APGD SSG+   + ++F+ EEK LIP+MGR WT EMLD P I  FF+IP +LRGKCHIVGGKL+  TIQTHA AYAA + N+E AM +RL RA+ RN ES
Sbjct:   98 ELKDKIETYENNRQGNLNEDPLAKSLMPSLASLFNTRTGVCAWKPVIHTDGVGKTWKVVVIDLNILKWYHTKGRPDEKVNEMKVTKFFMSILKEVDIPYEILSELLARTPFKPHQISTKESYNTHRFWVVSFSEWQKIEEENDRRYPSRPRRLRLANPK-TPFSSKGNTVAYSQNAPGDFSSGYVPGFEKSFSPEEKKLIPTMGRAWTLEMLDSPEIVEFFNIPADLRGKCHIVGGKLEPATIQTHAAAYAADKLNIEAAMNRRLKRAEDRNKES 371
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8973.17165.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
FirrV-1-C24.010e-8047.27n=1 Tax=Feldmannia irregularis virus a TaxID=23199... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8973contigEcto-sp9_F_contig8973:633..1478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size846
Cds size843
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.4536138-UTR-Ecto-sp9_F_contig8973:632..6351622930957.4536138-UTR-Ecto-sp9_F_contig8973:632..635Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8973 633..635 +
1692278966.7919812-UTR-Ecto-sp9_F_contig8973:632..6351692278966.7919812-UTR-Ecto-sp9_F_contig8973:632..635Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8973 633..635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.4714296-CDS-Ecto-sp9_F_contig8973:635..14781622930957.4714296-CDS-Ecto-sp9_F_contig8973:635..1478Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8973 636..1478 +
1692278966.8026762-CDS-Ecto-sp9_F_contig8973:635..14781692278966.8026762-CDS-Ecto-sp9_F_contig8973:635..1478Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8973 636..1478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8973.17165.1prot_Ecto-sp9_F_contig8973.17165.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8973 636..1478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8973.17165.1

>prot_Ecto-sp9_F_contig8973.17165.1 ID=prot_Ecto-sp9_F_contig8973.17165.1|Name=mRNA_Ecto-sp9_F_contig8973.17165.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=281bp
MKDMCMAMQRDQEQKRKEEANDKHFLPDLASLFNTKTGVCAWCPINHTHH
NTSYEVVVLCMPLLLWFNGKARPDAMLPEIQTRAYFMQIQSHTEIPYQAF
CAILEQTPFKPRQVDKQESWNRTNFLIVPLDEWKEMELRNEKTYPARHRT
LSVARKKHQSFWHFGNNIAYTQCAPGDTSSGFSQAYNRTFTMEEKALIPS
MGRTWTKEMLDKPVIRGFFDIPEELRGKCHIVGGKLQQETIQTHATAYAA
CRGNVELAMTKRLNRAKFRNTESTNKKRKR*
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mRNA from alignment at Ecto-sp9_F_contig8973:633..1478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8973.17165.1 ID=mRNA_Ecto-sp9_F_contig8973.17165.1|Name=mRNA_Ecto-sp9_F_contig8973.17165.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=846bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8973:633..1478+ (Ectocarpus species9 EcSCA_722f female)
GAGATGAAGGACATGTGCATGGCAATGCAGCGTGATCAAGAGCAGAAGCG
CAAAGAAGAAGCCAACGACAAGCATTTTTTACCCGACCTGGCCTCCCTCT
TCAATACCAAGACCGGCGTGTGCGCATGGTGTCCCATCAACCATACGCAC
CACAACACATCCTACGAGGTCGTTGTTTTGTGCATGCCACTTTTGCTGTG
GTTCAACGGAAAAGCACGCCCGGACGCCATGCTTCCGGAAATCCAGACAC
GTGCATACTTCATGCAGATCCAGTCGCACACGGAGATCCCTTATCAGGCG
TTTTGCGCTATCCTCGAGCAGACCCCGTTTAAACCGCGGCAAGTTGACAA
GCAAGAGTCCTGGAACCGCACAAACTTCCTGATAGTGCCTCTTGATGAGT
GGAAGGAAATGGAGCTTCGCAACGAAAAGACCTATCCCGCCCGCCACCGC
ACTCTGTCGGTGGCGCGTAAAAAGCACCAAAGTTTTTGGCACTTCGGCAA
CAACATCGCCTACACCCAGTGCGCGCCTGGCGACACCTCCTCTGGCTTCA
GCCAGGCATACAACAGGACTTTCACCATGGAGGAAAAGGCTCTCATCCCG
TCGATGGGACGAACGTGGACCAAGGAAATGCTGGACAAACCCGTCATCCG
AGGCTTTTTCGACATCCCCGAAGAGCTTCGGGGCAAGTGCCACATCGTCG
GCGGCAAGCTACAGCAAGAGACGATTCAGACCCACGCCACAGCTTACGCG
GCTTGTAGAGGAAACGTAGAATTGGCAATGACCAAGCGGCTAAATAGGGC
GAAATTCCGCAACACGGAGAGCACCAACAAAAAGCGCAAGCGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8973:633..1478+

>mRNA_Ecto-sp9_F_contig8973.17165.1 ID=mRNA_Ecto-sp9_F_contig8973.17165.1|Name=mRNA_Ecto-sp9_F_contig8973.17165.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1686bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8973:633..1478+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGGACATGTGCATGGCAATGCAGCGTGATCAAGAGCAGAAGCGCAA
AGAAGAAGCCAACGACAAGCATTTTTTACCCGACCTGGCCTCCCTCTTCA
ATACCAAGACCGGCGTGTGCGCATGGTGTCCCATCAACCATACGCACCAC
AACACATCCTACGAGGTCGTTGTTTTGTGCATGCCACTTTTGCTGTGGTT
CAACGGAAAAGCACGCCCGGACGCCATGCTTCCGGAAATCCAGACACGTG
CATACTTCATGCAGATCCAGTCGCACACGGAGATCCCTTATCAGGCGTTT
TGCGCTATCCTCGAGCAGACCCCGTTTAAACCGCGGCAAGTTGACAAGCA
AGAGTCCTGGAACCGCACAAACTTCCTGATAGTGCCTCTTGATGAGTGGA
AGGAAATGGAGCTTCGCAACGAAAAGACCTATCCCGCCCGCCACCGCACT
CTGTCGGTGGCGCGTAAAAAGCACCAAAGTTTTTGGCACTTCGGCAACAA
CATCGCCTACACCCAGTGCGCGCCTGGCGACACCTCCTCTGGCTTCAGCC
AGGCATACAACAGGACTTTCACCATGGAGGAAAAGGCTCTCATCCCGTCG
ATGGGACGAACGTGGACCAAGGAAATGCTGGACAAACCCGTCATCCGAGG
CTTTTTCGACATCCCCGAAGAGCTTCGGGGCAAGTGCCACATCGTCGGCG
GCAAGCTACAGCAAGAGACGATTCAGACCCACGCCACAGCTTACGCGGCT
TGTAGAGGAAACGTAGAATTGGCAATGACCAAGCGGCTAAATAGGGCGAA
ATTCCGCAACACGGAGAGCACCAACAAAAAGCGCAAGCGCTAAATGAAGG
ACATGTGCATGGCAATGCAGCGTGATCAAGAGCAGAAGCGCAAAGAAGAA
GCCAACGACAAGCATTTTTTACCCGACCTGGCCTCCCTCTTCAATACCAA
GACCGGCGTGTGCGCATGGTGTCCCATCAACCATACGCACCACAACACAT
CCTACGAGGTCGTTGTTTTGTGCATGCCACTTTTGCTGTGGTTCAACGGA
AAAGCACGCCCGGACGCCATGCTTCCGGAAATCCAGACACGTGCATACTT
CATGCAGATCCAGTCGCACACGGAGATCCCTTATCAGGCGTTTTGCGCTA
TCCTCGAGCAGACCCCGTTTAAACCGCGGCAAGTTGACAAGCAAGAGTCC
TGGAACCGCACAAACTTCCTGATAGTGCCTCTTGATGAGTGGAAGGAAAT
GGAGCTTCGCAACGAAAAGACCTATCCCGCCCGCCACCGCACTCTGTCGG
TGGCGCGTAAAAAGCACCAAAGTTTTTGGCACTTCGGCAACAACATCGCC
TACACCCAGTGCGCGCCTGGCGACACCTCCTCTGGCTTCAGCCAGGCATA
CAACAGGACTTTCACCATGGAGGAAAAGGCTCTCATCCCGTCGATGGGAC
GAACGTGGACCAAGGAAATGCTGGACAAACCCGTCATCCGAGGCTTTTTC
GACATCCCCGAAGAGCTTCGGGGCAAGTGCCACATCGTCGGCGGCAAGCT
ACAGCAAGAGACGATTCAGACCCACGCCACAGCTTACGCGGCTTGTAGAG
GAAACGTAGAATTGGCAATGACCAAGCGGCTAAATAGGGCGAAATTCCGC
AACACGGAGAGCACCAACAAAAAGCGCAAGCGCTAA
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