mRNA_Ecto-sp9_F_contig897.17160.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 403 bits (1035), Expect = 1.580e-126 Identity = 229/398 (57.54%), Postives = 251/398 (63.07%), Query Frame = 1
Query: 10 DCCTSNIASNGILCADSGAAPCIGDVDDDVPTEXXXXXXXXXXXXTVGSSYLGCFSDLPGSRIFTFEAATYTMTADACLALCANSAYYGTQYSEECWCGAEGADYDANGEGDCTMRCTGDTDEICGGYNAMSVYEINSDDGEIDDVDGGEIDDPSYLGCHSDPADNRVFVQDVSSAAMTAEVCSEACAGSAYYGTQYSTEVRPAQRDLRCVSCEAMIRWGGSSRYKSDIGFEKSPYDSSCSPIGNSLVCSLHAVVPSLTLASFTRDVVIQSSTRSHNTGRQEPSVCWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDGETDDVXXXXXXXXXXXXXXXPSYLGCYSDPADSRVFVQDISSAAMTAEICSEACAGSAYYGTQYSTE 1203
DCCTSNIASNGILCADSGAAPCIGDV DDVP E +LGCFSD SR+F E ++ +MTA+ C CA SAYYGTQYS ECWCGAEGADYDANG G C M C GD E CGG+ AMS+YE DVDGGE DDPSYLGC+SDPAD+RVF Q +SS +MTAEVCSEACAGSAYYGTQYSTE + + S + K+P P +V L A + + CWCGAEGADYDANGAGVCDMPCGGDA E CGGFYAMS+YEN ADDGE+DD PSYLGCYSDPADSRVFVQ +SSAAMTAEICS ACAGSAYYGTQYS E
Sbjct: 62 DCCTSNIASNGILCADSGAAPCIGDVGDDVPNET--------------EGFLGCFSDPADSRVFVQEISSASMTAEVCSEACAGSAYYGTQYSTECWCGAEGADYDANGAGVCDMPCGGDAGETCGGFYAMSIYEH--------DVDGGESDDPSYLGCYSDPADSRVFEQKISSDSMTAEVCSEACAGSAYYGTQYSTE---------------------HTVHASHVS-TKTPSVVHTPPTLPDIVPLLCGNATHYCFAFYKQ--------------------CWCGAEGADYDANGAGVCDMPCGGDAGETCGGFYAMSIYENDADDGESDD----------------PSYLGCYSDPADSRVFVQGVSSAAMTAEICSAACAGSAYYGTQYSVE 379
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI) HSP 1 Score: 259 bits (663), Expect = 1.380e-73 Identity = 162/364 (44.51%), Postives = 200/364 (54.95%), Query Frame = 1
Query: 157 SYLGCFSDLPGSRIFTFEAATYTMTADACLALCANSAYYGTQYSEECWCGAEGADYDANGEGDCTMRCTGDTDEICGGYNAMSVYEINSDDGEIDDVDGGEIDDPSYLGCHSDPADNRVFVQDVSSAAMTAEVCSEACAGSAYYGTQYSTEV-----------RPAQRDLRCVSCEAMIRWGGSSRYKSDIGFEKSPYDSS---C-SPIGNSLVCSLHAVVPSLTLASFTRDVVIQSSTRSHNTGRQEPSVCWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDGETDDVXXXXXXXXXXXXXXXPSYLGCYSDPADSRVFVQDISSAAMTAEICSEACAGSAYYGTQYSTE 1203
SYLGCFSD SR+F + + MTA C LCA+SA+YGTQYS ECWCG + DYDANGEG C M C+GD+ + CGG+ AMSVYE D G YLGC+SDPAD+R+F +S MT+E+C C YYGTQYST+ + D+ C S +A GG Y + P D S C S +S + L A T T ++ + + G Q + CWCG + ADYDANGAG CDM C GD+ EICGGFY+MSVYEN D + SY GCYSDPADSR+FV+ SS MTAE C+ C+ A+YGTQYST+
Sbjct: 15 SYLGCFSDPADSRVFDTQYSDSAMTAAVCSVLCASSAFYGTQYSSECWCG-DNVDYDANGEGVCDMACSGDSSQTCGGFYAMSVYENPDDSG--------------YLGCYSDPADSRIFELVATSDDMTSEICLGNCGAYQYYGTQYSTQCWCGDNADYDANGAGECDMAC-SGDASEICGGF--YTMSVYENVDPVDPSYLGCYSDPADSRIFELVA-----TSDDMTSEICLGNCGAYQYYGTQYSTQCWCG-DNADYDANGAGECDMDCSGDSSEICGGFYSMSVYENDVDPVDL-------------------SYRGCYSDPADSRIFVEAGSSDGMTAEFCATLCSDYAFYGTQYSTQ 335
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE) HSP 1 Score: 251 bits (640), Expect = 7.900e-72 Identity = 143/256 (55.86%), Postives = 159/256 (62.11%), Query Frame = 1
Query: 295 CWCGAEGADYDANGEGDCTMRCTGDTDEICGGYNAMSVYEINSDDGEIDDVDGGEIDDPSYLGCHSDPADNRVFVQDVSSAAMTAEVCSEACAGSAYYGTQYSTEVR------PAQR-----DLRCVSCEAMIRW-----GGSSRYKSDIGFEKSPYDSSCSPIGNSLVCSLHAVVPSLTLASFTRDVVIQSSTRSHNTGRQEPSVCWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDGETDD 1014
CWCGAEGADYDANG G C M C GD E CGG+ AMS+YE DVDGGE DDPSYLGC+SDPAD+RVF Q +SS +MTAEVCSEACAGSAYYGTQYSTEV P+ D C AM + G S S +G P DS V ++ A+ T ++ + S G Q CWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDG D+
Sbjct: 25 CWCGAEGADYDANGAGVCDMPCGGDAGETCGGFYAMSIYEH--------DVDGGESDDPSYLGCYSDPADSRVFEQKISSDSMTAEVCSEACAGSAYYGTQYSTEVSGFRYNTPSDNHEEGHDEICGGFYAMSIYENDADDGESDDPSYLGCYSDPADS-------------RVFVQGVSSAAMTAEICSAACAGSAYYGTQYSVECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDGVPDE 259
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE) HSP 1 Score: 248 bits (633), Expect = 2.010e-70 Identity = 155/331 (46.83%), Postives = 185/331 (55.89%), Query Frame = 1
Query: 10 DCCTSNIASNGILCADSGAAPCIGDVDDDVPTEXXXXXXXXXXXXTVGSSYLGCFSDLPGSRIFTFEAATYTMTADACLALCANSAYYGTQYSEECWCGAEGADYDANGEGDCTMRCTGDTDEICGGYNAMSVYEINSDDGEIDDVDGGEIDDPSYLGCHSDPADNRVFVQDVSSAAMTAEVCSEACAGSAYYGTQYSTEVRPAQRDLRCVSCEAMIRWGGSSRYKSDIGFEKSPYDSSCSPIGNSLVCSLHAVVPSLTLASFTRDVVIQSSTRSHNTGRQEPSVCWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDG 1002
DCCT+NIA NGILCA+SGAAPCIGDV+DDVPTE T+ SYLGC+SD SR+F + ++ MTA ECWCGAEGADYDANGEG C C G+ DEICGG+ AMSVYE +IDDPSYLGC+SDPAD+R+FVQD+SS AMTAEV + RP C + G +S ++G SC S +C + + V +++ S G Q CWCGAEGADYDANG G+CD+PC GD +EICGGFYAMSVYEN ADDG
Sbjct: 47 DCCTANIAQNGILCAESGAAPCIGDVEDDVPTETE----------TMDPSYLGCYSDPADSRMFVQDISSDAMTA-------------------ECWCGAEGADYDANGEGVCDTPCGGNDDEICGGFYAMSVYE------------NAKIDDPSYLGCYSDPADSRMFVQDISSDAMTAEVSN-----------------RPG--------CFRRLLCGIASASHLNLG--------SCF----SRLCFVMFYL-----------VWLEACAGSAYYGTQYSVECWCGAEGADYDANGEGICDIPCSGDVNEICGGFYAMSVYEN-ADDG 287
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE) HSP 1 Score: 234 bits (597), Expect = 1.360e-63 Identity = 153/353 (43.34%), Postives = 190/353 (53.82%), Query Frame = 1
Query: 154 SSYLGCFSDLPGSRIFTFEAATYTMTADACLALCANSAYYGTQYSEECWCGAEGADYDANGEGDCTMRCTGDTDEICGGYNAMSVYEINSDDGEIDDVDGGEIDDPSYLGCHSDPADNRVFVQDVSSAAMTAEVCSEACAGSAYYGTQYSTEVRPAQRDLRCVSCEAMIRWG--GSSRYKS-DIGFEKSPYDSSCSPIGNSLVCSLHAVVPSLTLASFTRDVVIQSSTRSHNTGRQEPSVCWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDGETDDVXXXXXXXXXXXXXXXPSYLGCYSDPADSRVFVQDISSAAMTAEICSEACAGSAYYGTQYSTE 1203
S YLGC+SD SRIF A MT++ CL C YYGTQYS +CWCG + ADYDANG G+C M C+GD EICGG+ AMSVYE D G YLGC+SDPAD+R+F ++ MT+E C +A Y D+ C + I G S Y++ D+ Y + +S + L A T T + + + G Q + CWCG + ADYDANGAG CDM C GD+ EICGGFY+MSVYEN DD + D+ SY GCYSDPADSR+FV+ SS AMTAE C+ C SA+YGTQYST+
Sbjct: 74 SGYLGCYSDPADSRIFDLVATADDMTSEICLGNCGAYQYYGTQYSTQCWCG-DNADYDANGAGECDMACSGDASEICGGFYAMSVYENPDDSG--------------YLGCYSDPADSRIFDLVATADDMTSECW---CGDNADYDANGEGVC-----DMACSGDASEICGGFYAMSVYENPDVDPVDPSYLGCYADPADSRIFDLVA-----TADDMTSENCLGNCGAYQYYGTQYSTQCWCG-DNADYDANGAGECDMACSGDSSEICGGFYSMSVYEN--DDVDAVDL----------------SYRGCYSDPADSRIFVEAGSSDAMTAEYCATLCPDSAFYGTQYSTQ 379
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE) HSP 1 Score: 221 bits (564), Expect = 4.670e-62 Identity = 132/193 (68.39%), Postives = 138/193 (71.50%), Query Frame = 1
Query: 1 NTSDCCTSNIASNGILCADSGAAPCIGDVDDDVPTEXXXXXXXXXXXXTVGSSYLGCFSDLPGSRIFTFEAATYTMTADACLALCANSAYYGTQYSEECWCGAEGADYDANGEGDCTMRCTGDTDEICGGYNAMSVYEINSDDGEIDDVDGGEIDDPSYLGCHSDPADNRVFVQDVSSAAMTAEVCSEACAGS 579
N DCCTSNIASNGILCADSGAAPCIGDVDDDV T XXXXXXXX VGSSYLGCFSDLPGSRIFTFEAATYTMTADACLALCA+SAYYGTQYSEECWCGAEGADYDANG G C M C GD DEICGG+ A+SVYE +DGE P C D VSS + E + C GS
Sbjct: 59 NGDDCCTSNIASNGILCADSGAAPCIGDVDDDVSTXXXXXXXXXP----VGSSYLGCFSDLPGSRIFTFEAATYTMTADACLALCADSAYYGTQYSEECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAISVYE---NDGE-----------PVEFSCSGDAG--------VSSGSSCCEADCDTCGGS 225
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL84_9PHAE) HSP 1 Score: 188 bits (478), Expect = 9.970e-51 Identity = 122/332 (36.75%), Postives = 144/332 (43.37%), Query Frame = 1
Query: 163 LGCFSDLPGSRIFTFEAATYTMTADACLALCANSAYYGTQYSEECWCGAEGADYDANG-EGDCTMRCTGDTDEICGGYNAMSVYEINSDDGEIDDVDGGEID---DPSYLGCHSDPADNRVFVQDVSSAAMTAEVCSEACAGSAYYGTQYSTEVRPAQRDLRCVSCEAMIRWGGSSRYKSDIGFEKSPYDSSCSPIGNSLVCSLHAVVPSLTLASFTRDVVIQSSTRSHNTGRQEPSVCWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDGETDDVXXXXXXXXXXXXXXXPSYLGCYSDPADSRVFVQDISSAAMTAE 1146
LGCF D +RIF ++ MT C C+ YYGTQYS ECWCG E ADYDANG +C M C GD E CGG +MSVY+ E++ DP+Y GC+SDP NRVFVQD SS MTAEVC+ C SA+YGTQYS E CWCG A Y NG GVCDMPC G+++E CGG Y+M VY P+YLGC+SDPAD R+FV + S+ AMTAE
Sbjct: 15 LGCFYDPADNRIFWLATSSDDMTKAVCSDHCSAYPYYGTQYSVECWCGDENADYDANGASNECVMPCAGDASETCGGSYSMSVYQ-------------NEVEIPVDPAYRGCYSDPGTNRVFVQDDSSDEMTAEVCAAQCDESAFYGTQYSRE-------------------------------------------------------------------------------------CWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVYAQ------------------------DPAYLGCFSDPADGRMFVWESSNTAMTAE 224
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P0_ECTSI) HSP 1 Score: 183 bits (464), Expect = 1.480e-48 Identity = 123/328 (37.50%), Postives = 140/328 (42.68%), Query Frame = 1
Query: 226 MTADACLALCANSAYYGTQYSEECWCGAEGADYDANGEGDCTMRCTGDTD-EICGGYNAMSVYEINSDDGEIDDVDGGEIDDPSYLGCHSDPADNRVFVQDVSSAAMTAEVCSEACAGSAYYGTQYSTEVRPAQRDLRCVSCEAMIRWGGSSRYKSDIGFEKSPYDSSCSPIGNSLVCSLHAVVPSLTLASFTRDVVIQSSTRSHNTGRQEPSVCWCGAEGADYDANGAGV-CDMPCGGDADEICGGFYAMSVYENGADDGETDDVXXXXXXXXXXXXXXXPSYLGCYSDPADSRVFVQDISSAAMTAEICSEACAGSAYYGTQYSTE 1203
MT C LCAN AYYGTQY ECWC ADY NG C C G TD E CGG++AMS+ + D +YLGC SDPADNR+F SS MT EVCS C+ YYGTQYSTE CWCG YD NGA C MPC GDA EICGG Y+MSVY+N + P+Y GCYSDP +RVFVQD SS MTA+ C+ CA SA+YGTQYS++
Sbjct: 1 MTTAVCEGLCANYAYYGTQYGTECWCDEGTADYAQNGLAVCDYECAGSTDGEFCGGFDAMSIRQHEVDTNP-----------DNYLGCFSDPADNRIFELVTSSDDMTEEVCSGHCSAYPYYGTQYSTE-------------------------------------------------------------------------------------CWCGDGETAYDTNGASEECVMPCAGDASEICGGPYSMSVYQNDVE------------------IPVDPAYRGCYSDPGTNRVFVQDASSDEMTADQCATQCADSAFYGTQYSSQ 214
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE) HSP 1 Score: 169 bits (428), Expect = 2.060e-43 Identity = 108/312 (34.62%), Postives = 134/312 (42.95%), Query Frame = 1
Query: 70 PCIGDVDDDVPTEXXXXXXXXXXXXTVGSSYLGCFSDLPGSRIFTFEAATYTMTADACLALCANSAYYGTQYSEECWCGAEGADYDANGEGDCTMRCTGDTDEICGGYNAMSVYEINSDDGEIDDVDGGEIDDPSYLGCHSDPADNRVFVQDVSSAAMTAEV-------CSEACAGSAYYGTQYSTEVRPAQRDLRCVSCEAMIRWGGSSRYKSDIGFEKSPYDSSCSPIGNSLVCSLHAVVPSLTLASFTRDVVIQSSTRSHNTGRQEPSVCWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYE 984
PC GD + V +Y GC+SD +R+F + ++ MTA+ C A C SA+YGTQYS ECWCG A Y NG G C M C+G+++E CGG +M VY DP+YLGC SDPAD R+FV + S+ AMTAE C+ C+GSAYYGTQYS E CWCG + ADY ANG GVCDMPC G++DE+CGG Y MSVY+
Sbjct: 61 PCAGDASETCGGSYSMSVYQNEVEIPVDPAYRGCYSDPGTNRVFVQDDSSDEMTAEVCAAQCDESAFYGTQYSRECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVY----------------AQDPAYLGCFSDPADGRMFVWESSNTAMTAEASRRGRQACASRCSGSAYYGTQYSQE-------------------------------------------------------------------------------------CWCG-DNADYAANGFGVCDMPCTGNSDEMCGGPYTMSVYQ 270
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT8_9PHAE) HSP 1 Score: 163 bits (412), Expect = 3.880e-40 Identity = 125/359 (34.82%), Postives = 160/359 (44.57%), Query Frame = 1
Query: 157 SYLGCFSD--LPGSRIFTFEA-ATYTMTADACLALCANSAYYGTQYSEECWCGAEGADYDANGEGDCTMRCTGDTD-EICGGYNAMSVYEINSDDGEIDDVDGGEIDDPSYLGCHSDPADNRVFVQDVSSAAMTAE---------------VCSEACAGSA--YYGTQYS--------TEVRPAQRDLRCVSCEAMIRWGGSSRYKSDIGFEKSPYDSSCSPIGNSLVCSLHAVVPSLTLASFTRDVVIQSSTRSHNTGRQEPSVCWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYENGADDGETDDVXXXXXXXXXXXXXXXPSYLGCYSDPADSRVFVQDISSAAMTAE 1146
+YLGC+SD +R+F+ + MT C LCA YGTQY ECWC +DYD NG C C G TD E CGG++A+S+ ++ V G SY+GC SDPADNR+F SS MTAE VC AC+G + G Y+ EV P+ R + + + F ++ D + L+CS+ SF G Q CWCG +Y ANG GVCDMPCGGDA ++CGGFY+M +Y PSYLGC+SD ADSR+FV + SS MTAE
Sbjct: 53 NYLGCWSDPYTAETRLFSTRIDVSDDMTTAVCDDLCAIYPLYGTQYGTECWCDDGTSDYDQNGPAVCDYECAGSTDGEFCGGFDAISIRSHDAI------VIGNNS---SYVGCFSDPADNRIFALGASSDDMTAECWCGNNAEYDVNGVGVCDMACSGDSREVCGGSYAMSVYENDNVEVDPSYRGCFADTADNRV-------------FHQTTSDFDLTTEHCGLLCSIEGF-------SF--------------YGLQYSIQCWCGDHNTEYSANGDGVCDMPCGGDAYDMCGGFYSMDIYS------------------------IDPSYLGCFSDLADSRIFVWEASSNDMTAE 344 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig897.17160.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig897.17160.1 >prot_Ecto-sp9_F_contig897.17160.1 ID=prot_Ecto-sp9_F_contig897.17160.1|Name=mRNA_Ecto-sp9_F_contig897.17160.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=489bp MTADACLALCANSAYYGTQYSEECWCGAEGADYDANGEGDCTMRCTGDTDback to top mRNA from alignment at Ecto-sp9_F_contig897:71..7629+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig897.17160.1 ID=mRNA_Ecto-sp9_F_contig897.17160.1|Name=mRNA_Ecto-sp9_F_contig897.17160.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=7559bp|location=Sequence derived from alignment at Ecto-sp9_F_contig897:71..7629+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig897:71..7629+ >mRNA_Ecto-sp9_F_contig897.17160.1 ID=mRNA_Ecto-sp9_F_contig897.17160.1|Name=mRNA_Ecto-sp9_F_contig897.17160.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2934bp|location=Sequence derived from alignment at Ecto-sp9_F_contig897:71..7629+ (Ectocarpus species9 EcSCA_722f female)back to top |