mRNA_Ecto-sp9_F_contig8953.17143.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8953.17143.1
Unique NamemRNA_Ecto-sp9_F_contig8953.17143.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8953.17143.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8953contigEcto-sp9_F_contig8953:1678..2207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.21568-CDS-Ecto-sp9_F_contig8953:1677..20011622930954.21568-CDS-Ecto-sp9_F_contig8953:1677..2001Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8953 1678..2001 +
1692278965.2520142-CDS-Ecto-sp9_F_contig8953:1677..20011692278965.2520142-CDS-Ecto-sp9_F_contig8953:1677..2001Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8953 1678..2001 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.2313375-UTR-Ecto-sp9_F_contig8953:2001..22071622930954.2313375-UTR-Ecto-sp9_F_contig8953:2001..2207Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8953 2002..2207 +
1692278965.268524-UTR-Ecto-sp9_F_contig8953:2001..22071692278965.268524-UTR-Ecto-sp9_F_contig8953:2001..2207Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8953 2002..2207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8953.17143.1prot_Ecto-sp9_F_contig8953.17143.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8953 1678..2001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8953.17143.1

>prot_Ecto-sp9_F_contig8953.17143.1 ID=prot_Ecto-sp9_F_contig8953.17143.1|Name=mRNA_Ecto-sp9_F_contig8953.17143.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=108bp
MAPVGEIAPGCLEKTKRKDLIAFPHRPGSERWHPSERLHRVLLLFSSYLL
WRQSPHCSWCDKKPKEYDRTRCHLSDYYYVQYGRSIGRLPPRAPRQLIRF
PCDGVDS*
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mRNA from alignment at Ecto-sp9_F_contig8953:1678..2207+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8953.17143.1 ID=mRNA_Ecto-sp9_F_contig8953.17143.1|Name=mRNA_Ecto-sp9_F_contig8953.17143.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=530bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8953:1678..2207+ (Ectocarpus species9 EcSCA_722f female)
ATGGCACCAGTCGGAGAGATCGCACCGGGGTGCCTTGAAAAAACTAAACG
AAAAGATCTAATTGCATTTCCGCACCGACCGGGGTCGGAGAGATGGCACC
CGTCGGAGAGATTGCACCGGGTTTTGTTGTTGTTTTCGTCCTATTTATTA
TGGAGACAGTCCCCCCATTGTTCGTGGTGCGATAAAAAACCCAAGGAATA
CGATCGCACCCGGTGCCATCTCTCCGACTATTATTACGTACAGTACGGTA
GATCAATCGGGCGACTACCGCCGCGCGCACCCAGACAATTAATACGATTT
CCCTGTGACGGTGTTGACTCATGACCAAAGCACCATCAGCTTGAAGTGCG
CATCTATATAGTGTAGGCGGGGCAAACCCAGCCGTAGGAGCACGAGCTTT
GATTGATGTAGCTGATCGACGGCTGCGACGAGTAGGCGGCACACCTGCTT
ACAGGGCGGGGATTCCTAGCGTTCGCAACATCAGCCACCAGGGATGAGGA
AATACCACAATAAAGTTCGAGACCACACCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8953:1678..2207+

>mRNA_Ecto-sp9_F_contig8953.17143.1 ID=mRNA_Ecto-sp9_F_contig8953.17143.1|Name=mRNA_Ecto-sp9_F_contig8953.17143.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8953:1678..2207+ (Ectocarpus species9 EcSCA_722f female)
ATGGCACCAGTCGGAGAGATCGCACCGGGGTGCCTTGAAAAAACTAAACG
AAAAGATCTAATTGCATTTCCGCACCGACCGGGGTCGGAGAGATGGCACC
CGTCGGAGAGATTGCACCGGGTTTTGTTGTTGTTTTCGTCCTATTTATTA
TGGAGACAGTCCCCCCATTGTTCGTGGTGCGATAAAAAACCCAAGGAATA
CGATCGCACCCGGTGCCATCTCTCCGACTATTATTACGTACAGTACGGTA
GATCAATCGGGCGACTACCGCCGCGCGCACCCAGACAATTAATACGATTT
CCCTGTGACGGTGTTGACTCATGAATGGCACCAGTCGGAGAGATCGCACC
GGGGTGCCTTGAAAAAACTAAACGAAAAGATCTAATTGCATTTCCGCACC
GACCGGGGTCGGAGAGATGGCACCCGTCGGAGAGATTGCACCGGGTTTTG
TTGTTGTTTTCGTCCTATTTATTATGGAGACAGTCCCCCCATTGTTCGTG
GTGCGATAAAAAACCCAAGGAATACGATCGCACCCGGTGCCATCTCTCCG
ACTATTATTACGTACAGTACGGTAGATCAATCGGGCGACTACCGCCGCGC
GCACCCAGACAATTAATACGATTTCCCTGTGACGGTGTTGACTCATGA
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