mRNA_Ecto-sp9_F_contig895.17139.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig895.17139.1
Unique NamemRNA_Ecto-sp9_F_contig895.17139.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW0_ECTSI)

HSP 1 Score: 508 bits (1307), Expect = 8.340e-177
Identity = 255/268 (95.15%), Postives = 260/268 (97.01%), Query Frame = 1 
Query:  556 MITPLEISRERLEPASLRRYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDKLIGKSQQHSTKIQDCLGGSVLARLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAALHDYLLYSGGVQGVLTFDQSSGPVTDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRYIYWNQEDSIVNPAGKERTVDDKAANPAVVPATVENCEQFALSEGVDLFKAKCDLTNAR 1359
            MITPLEISRERLEPA+LR+YHPSSARWIMIQRFLDVKGPEYERVL+VD GQIFFQANPFDIIGDPGVYTFTDDKLIGKSQQHSTKIQDCLG SVLA+LADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDA LHDYLLYSGGVQGVL FDQSSGP+TDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRYIYWNQEDSIVNPAGKER VDDKAA   VVPATVENCEQFALSEGVDLFKAKCDLTNAR
Sbjct:    1 MITPLEISRERLEPAALRKYHPSSARWIMIQRFLDVKGPEYERVLIVDAGQIFFQANPFDIIGDPGVYTFTDDKLIGKSQQHSTKIQDCLGASVLAKLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPMTDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRYIYWNQEDSIVNPAGKERAVDDKAA---VVPATVENCEQFALSEGVDLFKAKCDLTNAR 265
[Close]
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBK6_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.670e-58
Identity = 122/374 (32.62%), Postives = 193/374 (51.60%), Query Frame = 1 
Query:  406 DLCLGMAVGISPAQLVTFAASFREFAPSADLFIFFEAPTSERFNDIIDTFMITPLEISRERLEPASLRRYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTF--TDDKLIGKSQQHSTKIQDCLGGSVLARLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAALHDYLLYSGGVQGVLTFDQSSGPVTDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRYIYWNQEDSIVNPAGKERTVDDKAANPAVVPATVENCEQFALSEGVDLFKAKCDLTNARVGSLGDCCAACGGRAGCSAFSFDKNFGLCYMKNCDRPNTPGSSATAWSITSGIR 1521
            DL +G+  GISP  L  F  S R  +PSA L ++ ++P  E    I++ + +T LE S   +EPA LR+YHPS+ RW +I R+L      Y RV++ DV    FQA+PF+   D G + F   + + IG+   +   +QDC G +VL ++  +  I SGVS+G+++ V+ Y  +M   + +  F  CE+ GVD  +H+ L+++  +  +  F QS+G V ++ A +  + G +V N +   V +V++Y     L +  F  +++W             R  D             E C  + + EGVDLFK +CDLT       G+CCA C    GC AFS   +   C++KNC   NT  + +    + SG +
Sbjct:   32 DLVVGLGTGISPENLAVFCGSLRAVSPSAALVLYLDSPLPELHRRIVERYDVTALEFSVSLIEPAFLRKYHPSNYRWPLIHRYLKDHANAYRRVVLADVRDTMFQADPFERF-DRGFFAFHGVESRTIGQCGWNGGWVQDCFGRTVLQQVQSEAIICSGVSMGSTDEVLAYLGEMQRTMETKEFATCERNGVDQGVHNVLVHTKRIPNLKVFSQSNGWVANLQAQRARIHGGQVFNRQDELVAVVHQYDRRRDLQSAYFDTFVFW------------PRKTDG------------ELCAGYTVEEGVDLFKGRCDLTVTGSQGTGECCAKCTATPGCKAFSIAGS--QCFLKNC---NTVTTRSPMPGVASGFK 375
[Close]
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IE52_GUITC)

HSP 1 Score: 137 bits (344), Expect = 6.680e-34
Identity = 72/212 (33.96%), Postives = 122/212 (57.55%), Query Frame = 1 
Query:  559 ITPLEISRERLEPASLRRYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDKLIGKSQQHSTKIQDCLGGSVLARLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAALHDYLLYSGGVQGVLTFDQSSGPVTDVPAGKFDMSGSR--VTNLEGREVPIVYRYVENAILTAEVFRRYI 1188
            +T L ++R  L+PA+L +YHPS+ RW+++Q FL   G  + +VL+ DV    FQ++PF I+ + G++TF++   I     ++  I+ C G   +  LA K  I SG+SLGT+  V  Y   M++ ++   F ACE+ GVD  +H+ L++ G + G+   DQ +GPV  + + K  MS +   V N       IV++Y  +  +  + FR+++
Sbjct:    1 VTVLPVNRVSLDPATLGKYHPSTTRWVLMQSFLKRVGHNFNKVLLADVRDTGFQSDPFSIVSEAGLWTFSESVNIMGDDWNTGWIRSCFGQGKVDELASKEIICSGISLGTTMHVQSYLDAMAKEINGPNFAACERNGVDQGIHNVLVHQGSLPGLHVLDQYNGPVAHLQS-KVGMSFNNDVVINSRNERAVIVHQYDRDVFVMRKFFRQFV 211
[Close]
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Match: Uncharacterized (protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IEM2_GUITC)

HSP 1 Score: 144 bits (364), Expect = 7.050e-34
Identity = 102/382 (26.70%), Postives = 176/382 (46.07%), Query Frame = 1 
Query:  406 DLCLGMAVGISPAQLVTFAASFREFAPSADLFIFFEAPTSERFNDIIDTFMITPLEISRERLEPASLRRYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDKLIGKSQQHSTKIQDCLGGSVLARLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAG-FQACEKAGVDAALHDYLLYS-GGVQGVLTFDQSSGPVTDVP---AGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRYIYWNQEDSIVNPAGKERTVDDKAANPAVVPATVENCEQFALSEGVDLFKAKCDLTNA---RVGSLGDCCAACGGRAGCSAFS-FDKNFGLCYMKNCDRPNTPGSSATAWSITSGIRL 1524
            DL LG+   +       F  S R F+PS+D+ +F  A T  R + ++    +  ++ + E +  A++R +   + RW++ +RFLD+ G  Y RVL+ DV Q+ FQ+NPFD++  PG+Y F++   + + +  S  I+ C   SVL  L DK  ++ G  +G+ + V+ Y + M+  + S      C   GVD  +H+ + Y+      ++  +Q++G V ++    A  ++     V N  G    +V RY     +   +F  Y+ W+  +      G                     C ++ L   V+LFK   D  ++   RV S   CC  C     C+ F+ FD+    C+MK+  R   P         TSG ++
Sbjct:  179 DLALGLVDKLHEEYTSIFVLSLRRFSPSSDIVLFLRASTP-RLDALLKNHGVISVKYAEEDISQAAMRNHSSLTYRWLVFERFLDLHGKNYRRVLLADVVQVAFQSNPFDVMKKPGLYAFSESISLSQDEWTSNWIRACFESSVLTPLPDKETLNVGYVMGSIDRVLPYVKVMAATIRSVTRADGCRGEGVDQGVHNVVAYTDASFSDLVVQNQNNGAVGELQSPFAMTYNAGVKAVINGMGVAAAVVLRYYHVPEVMKLLFNSYVVWDVHNVSKGTGG---------------------CWRYMLMTHVELFKGHGDFADSSVERVASPLGCCEICDRNQQCNGFTHFDQT---CWMKSISRSPKPEEGFPVPESTSGWKI 535
[Close]
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pontibacillus chungwhensis BH030062 TaxID=1385513 RepID=A0A0A2VBV4_9BACI)

HSP 1 Score: 70.5 bits (171), Expect = 7.350e-10
Identity = 61/222 (27.48%), Postives = 101/222 (45.50%), Query Frame = 1 
Query:  406 DLCLGMAVGISPAQLVTFAASFREFAPSADLFIFFEAPTSERFNDIIDTFM-ITPLEISRERLEPASLRRYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDKLIGKSQQHSTK-IQDCLGGSVLARLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAALHDYLLYSGGVQGVLTFDQSSGPVTDV 1065
            +L +G+    S   +  F  S  +   S ++ +FFE    E  N + +  + I+ +   R  LE    + +     R  +   FL   G  Y +VL+ DV  +FFQ NPFD     G  T   ++L  K +  +TK I    G  +  +L ++  I +G + G + L++ Y  +M   L    +    +   D A+H+YL++SG VQ V   D   GP+  V
Sbjct:    8 NLIMGLISHYSWEDIKPFFLSLEKVNYSGEVVMFFEHINEETQNTLKNLNVNISLIPYERIGLE----KTFDIIDYRHYLYLNFLRAHGHRYNKVLLTDVRDVFFQLNPFDAGWSDGSITVAKEELKIKDEYWNTKWILTKFGNHIYQQLENETIICAGTTYGPTELILAYLEEMVYHLFQLHY--FPQIINDQAVHNYLIHSGKVQPVAYSDNEKGPIMTV 223
[Close]
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7W1CQ63_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 1.680e-9
Identity = 49/184 (26.63%), Postives = 85/184 (46.20%), Query Frame = 1 
Query:  613 YHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDKL--IGKSQQHSTKIQDCLGGSVLARLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAALHDYLLYSGGVQGVLTFDQSSGPVTD---VPAGK--FDMSGSRVTNLEGREVPIVYRY 1143
            +H    R ++   FL     +Y+RVL+ D   +FFQA+PF     PG++ F +D+   +G    H   I    G   L +  D+    +G   G    +++Y  QM     +   +  +++  D  +H+YL+Y+G    V   D    PV     VP  K  FD +   + + +G  VP++++Y
Sbjct:  109 FHLFYRRHLLYLAFLREYAADYDRVLLTDCRDVFFQADPFGWEQSPGLHLFLEDESNKLGTCGHHIRWIMSAFGPETLQKWKDETVSCAGTVFGDVQAILDYLEQMFS--QTMRVKTLKESDGDQGIHNYLIYAGAFPEVTIHDNRRKPVMTLGLVPPDKLQFDQN-DYLLDEDGAIVPVLHQY 289
[Close]
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cerasicoccus arenae TaxID=424488 RepID=A0A8J3GDY8_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 2.330e-9
Identity = 47/187 (25.13%), Postives = 91/187 (48.66%), Query Frame = 1 
Query:  622 SSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTD--DKLIGKSQQHSTKIQDCLGGSVLARLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAALHDYLLYSGGVQGVLTFDQSSGPVTDV---PAGKF--DMSGSRVTNLEGREVPIVYRYVENAIL 1161
            +SAR++    ++      +  VL+ DV  +FFQA+PF    +  +  F +  +  IG    +S   +   G   L R +++    SG ++GT+  +++Y R M++ L++   +     G D A H+ ++ +  V     ++  SGP+  +   P   F  D  G  V N +G  +PI+++Y  + +L
Sbjct:  115 TSARYLYYYLYIAANKDRFSNVLLTDVRDVFFQADPFSYPTNSELNFFLEHPNARIGSCPVNSFWFRGLYGEEDLKRHSERRVSCSGTTIGTTEGILDYLRSMTDELTATNARMTNVDGTDQAAHNGMIVNEKVSNYRIWENGSGPILTLGYEPVDNFLPDEEGL-VRNFDGSIIPIIHQYDRHQVL 300
[Close]
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mucilaginibacter gotjawali TaxID=1550579 RepID=A0A839SJQ6_9SPHI)

HSP 1 Score: 66.2 bits (160), Expect = 2.740e-8
Identity = 44/177 (24.86%), Postives = 84/177 (47.46%), Query Frame = 1 
Query:  622 SSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTF-TDDKLIGKSQQHSTKIQDCLGGSVLARLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAALHDYLLYSGGVQGVLTFDQSSGPVTDVPAGKFDMSGS--RVTNLEGREVPIVYRY 1143
            S +R+     +L     +Y+ VL+ DV  + FQA+PF  I +     F ++   I  S   S  ++   G   LA++ADK +I SG ++G+ N ++ Y   M ++ +          G D  +H+YL+++    G    + + G V  +         S   +T+ +G  +P+V+++
Sbjct:  112 SGSRYCYYYEYLLANQDKYDLVLITDVRDVLFQADPFAGIRNNSFLNFYSEAHSIANSFYTSYWLRHAFGKKALAQIADKVSICSGTTIGSVNQIINYLEAMIKMQAKITAGLTGLGGFDQGVHNYLVHNNYFPGSNLLENNEGEVATLGESNSIAVNSDHELTDKKGHVIPVVHQF 288
[Close]
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudodesulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) TaxID=643562 RepID=E6VT05_PSEA9)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-8
Identity = 73/267 (27.34%), Postives = 120/267 (44.94%), Query Frame = 1 
Query:  406 DLCLGMAVGISPAQLVTFAASFREFAPSADLFIFFEAPTSERFNDIIDTFMITPLEISRERLEPASLRRYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDK--LIGKSQQHSTKIQDCLGGSVLARLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEK-AGVDAALHDYLLYSGGVQGVLTFDQSSGPVTDVP--AGK--FDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRY 1185
            +L LG+A G     +  F AS  E +    + + F +PT+ R  D +    +T L +      PA       ++ R+ + + FL      Y R+L+ DV  + FQA+PFD     G+    +D    I +   +S  ++   G   LA +AD P   SG  +   + ++ Y   M   L    F   E+ AG D  +H+ L+++G +   LT   + GPV  +   AG+   D  G RV N  G+   +V++Y     L A +  R+
Sbjct:    4 NLILGLAAGYHYGDMRPFLASLGE-SGFRGVCVLFVSPTT-RDLDRVGAHGVTVLPMPL----PAGPDTLPANALRYFLYRDFLLGSAIRYRRILLTDVRDVIFQADPFDAGWADGLNCVLEDPRTTISQCPHNSRWVRQHQGEGALASVADSPVSCSGTVVADHDAMLGYLDAMIRRLIP--FTPGERMAGYDQGVHNVLVHTGALPS-LTLHDNDGPVLTLASTAGEPAVDAQG-RVRNARGQIPAMVHQYDRKPSLFARIRARH 260
[Close]
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Match: Uncharacterized (protein n=1 Tax=Desulfovibrio sp. TaxID=885 RepID=A0A353D8H5_9DELT)

HSP 1 Score: 63.9 bits (154), Expect = 1.070e-7
Identity = 72/265 (27.17%), Postives = 112/265 (42.26%), Query Frame = 1 
Query:  406 DLCLGMAVGISPAQLVTFAASFREFAPSADLFIFFEAPTSERFNDIIDTFMITPLEISRERLEPASLRRYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDPGVYTFTDDK--LIGKSQQHSTKIQDCLGGSVLARLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAALHDYLLYSGGVQGVLTFDQSSGPVTDVPAGKFD---MSGSRVTNLEGREVPIVYRYVENAILTAEVFRRY 1185
            DL LG+A G     L  FAAS R    +    +F  A T+    D +  F I  +   R    PA       ++ R+ + + FL    P++ RVL+ DV  + FQA+PF      G     +D    +G     +  ++  LG   LA LA  P   SGVSL ++ L++ Y  ++   L          AG D  +H+ +L      G + F  + GPV  + +   D    +     N  G    +V++Y     L A + +RY
Sbjct:    5 DLILGLAAGYHAGDLRPFAASLRASGFAGRCVLFVSASTTGA--DSLAGFGIEAVPFER----PAHQAHVPYNAWRYFLYRDFLRAN-PKFGRVLLTDVRDVVFQADPFSFGWPEGFCAMLEDPSATVGSCAHTAHWVRGHLGQEALADLAAFPLSCSGVSLASALLMLAYLERLCARLLPFT-PGPRMAGYDQGVHNLVLRRD-PPGPVHFFGNDGPVLTLGSKPDDPAVAADGLALNDAGMPAILVHQYDRKPELFARIRKRY 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig895.17139.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
Uncharacterized8.340e-17795.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical2.670e-5832.62protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Uncharacterized6.680e-3433.96protein (Fragment) n=1 Tax=Guillardia theta (strai... [more]
Uncharacterized7.050e-3426.70protein n=1 Tax=Guillardia theta (strain CCMP2712)... [more]
Uncharacterized7.350e-1027.48protein n=1 Tax=Pontibacillus chungwhensis BH03006... [more]
Uncharacterized1.680e-926.63protein n=1 Tax=Chthoniobacterales bacterium TaxID... [more]
Uncharacterized2.330e-925.13protein n=1 Tax=Cerasicoccus arenae TaxID=424488 R... [more]
Uncharacterized2.740e-824.86protein n=1 Tax=Mucilaginibacter gotjawali TaxID=1... [more]
Uncharacterized3.430e-827.34protein n=1 Tax=Pseudodesulfovibrio aespoeensis (s... [more]
Uncharacterized1.070e-727.17protein n=1 Tax=Desulfovibrio sp. TaxID=885 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig895contigEcto-sp9_F_contig895:20403..25346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score507.7
Seed ortholog evalue6.4e-141
Seed eggNOG ortholog2880.D8LAW0
EggNOG OGs2DVCF@1,2S6N3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_006230.1
Exons7
Model size1542
Cds size1542
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.8085043-CDS-Ecto-sp9_F_contig895:20402..205861622930953.8085043-CDS-Ecto-sp9_F_contig895:20402..20586Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 20403..20586 -
1692278965.0406992-CDS-Ecto-sp9_F_contig895:20402..205861692278965.0406992-CDS-Ecto-sp9_F_contig895:20402..20586Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 20403..20586 -
1622930953.8210747-CDS-Ecto-sp9_F_contig895:20905..210821622930953.8210747-CDS-Ecto-sp9_F_contig895:20905..21082Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 20906..21082 -
1692278965.0519123-CDS-Ecto-sp9_F_contig895:20905..210821692278965.0519123-CDS-Ecto-sp9_F_contig895:20905..21082Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 20906..21082 -
1622930953.8337882-CDS-Ecto-sp9_F_contig895:21691..218041622930953.8337882-CDS-Ecto-sp9_F_contig895:21691..21804Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 21692..21804 -
1692278965.0665824-CDS-Ecto-sp9_F_contig895:21691..218041692278965.0665824-CDS-Ecto-sp9_F_contig895:21691..21804Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 21692..21804 -
1622930953.878482-CDS-Ecto-sp9_F_contig895:22703..230201622930953.878482-CDS-Ecto-sp9_F_contig895:22703..23020Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 22704..23020 -
1692278965.076122-CDS-Ecto-sp9_F_contig895:22703..230201692278965.076122-CDS-Ecto-sp9_F_contig895:22703..23020Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 22704..23020 -
1622930953.897925-CDS-Ecto-sp9_F_contig895:23541..237411622930953.897925-CDS-Ecto-sp9_F_contig895:23541..23741Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 23542..23741 -
1692278965.092463-CDS-Ecto-sp9_F_contig895:23541..237411692278965.092463-CDS-Ecto-sp9_F_contig895:23541..23741Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 23542..23741 -
1622930953.9165878-CDS-Ecto-sp9_F_contig895:24133..244561622930953.9165878-CDS-Ecto-sp9_F_contig895:24133..24456Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 24134..24456 -
1692278965.1046162-CDS-Ecto-sp9_F_contig895:24133..244561692278965.1046162-CDS-Ecto-sp9_F_contig895:24133..24456Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 24134..24456 -
1622930953.9306345-CDS-Ecto-sp9_F_contig895:25118..253461622930953.9306345-CDS-Ecto-sp9_F_contig895:25118..25346Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 25119..25346 -
1692278965.1145172-CDS-Ecto-sp9_F_contig895:25118..253461692278965.1145172-CDS-Ecto-sp9_F_contig895:25118..25346Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig895 25119..25346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig895.17139.1prot_Ecto-sp9_F_contig895.17139.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig895 20403..25346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig895.17139.1

>prot_Ecto-sp9_F_contig895.17139.1 ID=prot_Ecto-sp9_F_contig895.17139.1|Name=mRNA_Ecto-sp9_F_contig895.17139.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=514bp
MAVLKAHRVHKTHNLLGRAGSGLGRRRGSGIDRNNSSDSLKHGEYNRACR
VIVVLVLFMTIISAPNLFLGPNALFSVNMSAREEHENGARPGIRGLSAYP
PIGSPPVASSHGPRPAERLGVANTNGGVDGAPGAGDLCLGMAVGISPAQL
VTFAASFREFAPSADLFIFFEAPTSERFNDIIDTFMITPLEISRERLEPA
SLRRYHPSSARWIMIQRFLDVKGPEYERVLMVDVGQIFFQANPFDIIGDP
GVYTFTDDKLIGKSQQHSTKIQDCLGGSVLARLADKPAIHSGVSLGTSNL
VVEYARQMSEVLSSAGFQACEKAGVDAALHDYLLYSGGVQGVLTFDQSSG
PVTDVPAGKFDMSGSRVTNLEGREVPIVYRYVENAILTAEVFRRYIYWNQ
EDSIVNPAGKERTVDDKAANPAVVPATVENCEQFALSEGVDLFKAKCDLT
NARVGSLGDCCAACGGRAGCSAFSFDKNFGLCYMKNCDRPNTPGSSATAW
SITSGIRLKQTSQ*
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mRNA from alignment at Ecto-sp9_F_contig895:20403..25346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig895.17139.1 ID=mRNA_Ecto-sp9_F_contig895.17139.1|Name=mRNA_Ecto-sp9_F_contig895.17139.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4944bp|location=Sequence derived from alignment at Ecto-sp9_F_contig895:20403..25346- (Ectocarpus species9 EcSCA_722f female)
ATGGCGGTGCTCAAAGCACACAGGGTGCACAAAACGCACAATTTGTTAGG
CAGGGCAGGCTCCGGGCTCGGCAGGCGAAGGGGCAGCGGGATTGATCGAA
ACAACAGCAGCGACAGTTTGAAGCATGGCGAATACAATCGAGCGTGTAGG
GTAATTGTCGTGCTCGTCTTGTTCATGACGATCATCTCCGCTCCGAACCT
TTTTCTGGGTCCGAATGCTCTATTTTCGGTGAGAGCTCCTCCGTTGCGTA
CACGTGTTGTCGTTCTCTCGCTTAGACTACATGTGATGTGTACCGTGGTA
TTCTGTAGTCTACGTCCCACTACAAGGGTGTTGTTTGTATGGATCAAATG
TCGTGGCTATCTCGTTGATATTAATATGCTTTGCAGCTAGCTGAAGTCTA
ATGCATCTACATGTATGTCTATTGGCAGTTGTAGTTATGATCTCTGTTGG
TTTGGCATTCGCAAATTTGTAGCTCCCCCCCCTATCTTGCTGCGTGGTTC
TACGAGTATTTGTTGGTTGGGGTCGGCGGTGTTGAGACAGGGCCACAGCA
GTGTATTGTCGAAGATCAACTTGGGGTGGCGTTCATGTATGCCCCTGTGG
AGTACGTCGTCGCCATACAAATTGCTACAATAGGGCGACGACACGATTTT
CACCACGTCGCGGAATTAATGCCGTCCGTTGTGCCCATCTACTACGTGTT
TCTTACGATATCAAGTACCCGGTCGCTGCGTTCTTCATGTTGCACTCGTC
GTATGATACCATTGCCAGCATTGTTACATGGCTGAAGAGCTGTGGCTTGT
CCCCCTTTTGATGATAGAGGGAACGGCCACTTATATAGATTGTAGGGCAT
TACTTAATACCCGTTCTGTGTACTCAAACTCTTCTTAAAGGTCAACATGT
CCGCCCGTGAGGAGCATGAGAACGGCGCCCGGCCCGGTATTCGTGGCCTT
AGCGCATATCCTCCTATTGGAAGCCCGCCGGTAGCATCATCACACGGACC
TCGGCCAGCAGAAAGGCTTGGCGTTGCCAACACAAATGGTGGAGTTGACG
GGGCGCCGGGGGCGGGTGACTTGTGCCTGGGTATGGCCGTGGGCATAAGC
CCCGCGCAACTCGTTACGTTTGCGGCATCCTTCCGCGAGTTTGCGCCGTC
GGCCGACCTATTTATATTCTTTGAGGCACCCACAAGCGAACGGTTTAACG
ACATTATCGACACGTGAGTACGCCAAGAGAGAAGGACATGGGGAGCCTCT
CTGACGCCACGAAAATCGCACTTTACGTCCCGTGCGTGTGTGCAGGAGTG
GGTAGTCTACAGTTCGTTTCAGGAGCTTACGTTTGTGATTCATATCATGG
TACCCACGGACCTTAAGCGGTGGAGCGGATTTCGTGTCGTCTTGTCCTGC
CCCCCCCAAAAGTTGGCACATTGCGCAGCGTCAAGACTCATGCTGATCCT
TAAATCATCACCAGCACGGCCGCCGTGCGGTCTGAGGCACTGCCGCCGTA
TGCATAGGACTTGTTGGCAAGGCCATTGTGGCCTAGAGCCGCAACACAAA
ACTCCAACCCGTTTTTGGGCGCCGCCTATTTTTGCACGGTGCGGGGTTCG
GCCAGGTTTATGATAACCCCGCTCGAGATCTCCAGGGAGCGACTGGAACC
AGCGTCCCTTCGCAGGTACCACCCTTCCTCCGCCCGCTGGATCATGATCC
AACGGTTCTTGGACGTCAAGGGCCCCGAATACGAGCGCGTGTTGATGGTC
GACGTGGGCCAGATATTTTTCCAGGCCAATCCTTTCGACATCATCGGGGA
CCCTGGTGAGAACGTACCCCGAGGTCTTGGCGCATTTGCCCCGACGTCCC
CCAACTCTGCACACTGAAAGACCCAAACTGTGTTTGTGTCATGTCATCCT
GTTTCCGCTGATCGAACAGTTGATGAGTTGAGAGGACGATATCGATACCT
TTGCCGCAGGAGGTACGTGTACCGGCGGACGACTCGTAGACAAATCACAC
GAGATACTCTTCAAGCCCCACCAAGGCCAAATACGAGAGACAATGGACAA
AACCCACTATACTGAAGCAGCTGCAGCAACAGTGCTAGGAGACTCAACGT
GTACGCTCGGCGTAGTCGACAAAGCGTCTCATCTATTTGCAATGCACTCT
ACCAAGCAGCTCGGGACGGCCGATGGGGTATAAATACCTGCAAGCTCTCC
CTGTGCACGAAAGTGGTTGGCTTTGTCGCCCACCTCCGACTTCAACACAT
CCAAAAGCAAGATAACCAGCTGTCAACAATGACCTGTGTTGCCACGCCGT
GCACGTCAACTACTACCACTGCTCAGGAGTATACACCTTCACGGACGACA
AGCTTATCGGCAAGAGCCAGCAGCACTCCACCAAGATACAAGACTGTCTC
GGGGGCTCGGTCCTCGCCAGACTCGCCGACAAACCCGCCATCCACTCGGG
CGTCAGCCTGGGAACGTCCAACCTCGTCGTCGAGTACGCCCGCCAGATGT
CGGAGGTCCTCTCCTCGGCAGGGTTTCAGGCGTGCGAGAAAGCCGGTGTG
GACGCGGCCTTGCACGACTATTTGCTGTACAGCGGGGGGGTGCAGGGGGT
GCTGACGTTCGACCAGTCTTCTGGGCCCGTGACCGACGTGCCGGTGAGCC
TGTACAGCAGTATGTAACCGCTAGAGTAATGGGGGTTGTCGTGGTAGGGT
CAAATGGTGTGCAGTTGAAGCTCTCGATTGCTGCATGTGAGATCCTTCAC
AGTATACAATACATATCCGTGTTGGATTTCATGATACCTCAATTCACTTC
GCCCTATTTCTGTGCCCATGCGTCATCTGAGAAGCAGTACAAACGTCGAA
CCGTGTGTTGCACACGGCCACCTTTGCGACATGTAGAAATCTCTCTATCA
TTGGGGCCATTTTTGGGAGCAAGAGCATATTTGTCCGCAACACGAAAGCA
GAGCCGTACAAGATGAAAATAACTGTTGAAGTTGTTGTCTGGAACACATC
TGTCTGTGATTCGTGGATTGTTCGTCATTTCCACGGGAGATGCTGACAAA
CCCTGCGGGACACTAGCGCTACCCGCCACGTGATGATTCATGCGCAAGGG
CGAATACGAAACCCTGTAGAGAGGCGAAATAATTTTATCCGCCACGCCGA
ACACACGAGAAACTATTTCCCGCTAGACACCCAAAGCTTTGTACATGGCA
GGGATCCACAGCGTACTTCTGAGTCAGTCCCACCAACATCTAGCATGCAG
CATGAAGACTTCGTAGTCACCTAGTTGGAAATGTGTAGGTCCATCACGCT
TCGATGTCCGAATCACCGCGCCATGTGGGAGAGTTTCGCAGGGGTATTGG
ATCGGAAACGCGTGGAAAGCAGCTACATTTCGCTGCGTTAACGTTTGAGG
TTTCGGGAGTGGTTGACGTTGGGTGCTCCCATTGTGTAGAGCGTTCTGTC
CGCTCCAAACTTCCGATAACGAACCACGTGCACGTGCTCTGTTCGCCACC
CCATTTCCTGTTACCGCTGCTGCTGTTCTCGTTCTGGCGAAGGCCGGGAA
GTTCGATATGTCTGGTTCCCGCGTGACAAACCTCGAGGGACGCGAGGTGC
CGATAGTGTATCGCTACGTCGAGAACGCTATCTTGACGGCCGAGGTCTTC
AGGAGGTGCGGCTGCATGTTCTCACGTTGTTGGGCGCGTGACACGTCTTG
GAGTCGATCCTAGAAAGAACTTGTTACACTCGCATCGAGTTACCCGTCCT
GGTCACAAGAGGTTCCCAGTTGAGGGTAAGTTCGTGTGGGTGGAGAGTAC
CCGATTTGCAGGGTATCTGTCGATTGGCATTTACCAGAATCGGTACACCT
ACGCACCTGCGTGCCGACGAGAGCTGGCTACTTGTGCTTTTGTCGACCTA
GAAGTAGAAGACAGACGAGATGAAACTTGACACTCACTGCCGAGAATCGT
ACCCTCTAGGGCCTCGTTAAACGGTGACAGTCCCAGCGTTGGCCTCAGGA
GAGCGGGGGTCACACCGCCGACCCCCCGCACAAGAAGAGCTGAATTTTCG
AGTATAAGTGCCATCTAATGTGCCATCAGTGCTTTACCTTGTCAGGAGGA
ACACGCGAAGCTCGGTGTCTGTTTCTGTTCCCGTTCTAGGCAAAAACAAA
CAGCTGCAAGATTCGCGGCTCCGTGTAGTAAGCAGCTTTCGGATGCCGCT
TAAACGAGATGACGAAGTCATGAAAGATGCGTCATCCTTTACTCCTCAAA
ATGTTCTTGAAAAGGTACATCTACTGGAACCAGGAAGATAGTATCGTCAA
CCCGGCTGGCAAGGAGAGGACTGTCGATGATAAGGCGGCCAACCCGGCAG
TTGTTCCTGCTACCGTCGAAAACTGCGAGCAGTTCGCGCTTTCGGAGGGG
GTTGATCTGTTCAAGGCCAAGTGCGACCTCACCAACGCGAGGTACACATG
AGCTTTAGAAAAGGAGGCTTTCGTCATTGCGCAAAAATATCTTCAGTCAA
GTCGTGAAAGGCTTTCGACAAGGTTGTGTTTCCAAGCAATAGATCTGGAG
CCCACCCCGTACATTTCCGGAGACGATCATGCTTTTCCCCTCTGGGCGGC
GTTGAGTGCCTCGAATAGCTTGTCGCCTCAAACAGACCAATCACGTCGTC
TCAACACCTTAGAGGCAATATTCGCCCCCGGCTAACGTGTGTGCCCTGCT
GTATTCTCTCTCCTACCCCCAACGGTCGGTCGGGACGACTCTTCGAAAAT
CACCCGTCAGGGTTGGTTCTCTCGGTGACTGCTGCGCCGCGTGTGGCGGA
AGGGCTGGCTGCTCAGCCTTTTCTTTCGACAAAAACTTTGGGCTGTGCTA
CATGAAGAACTGCGACAGGCCGAACACGCCCGGATCCTCTGCTACCGCAT
GGAGCATTACCTCTGGGATAAGATTGAAGCAGACCTCGCAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig895:20403..25346-

>mRNA_Ecto-sp9_F_contig895.17139.1 ID=mRNA_Ecto-sp9_F_contig895.17139.1|Name=mRNA_Ecto-sp9_F_contig895.17139.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3084bp|location=Sequence derived from alignment at Ecto-sp9_F_contig895:20403..25346- (Ectocarpus species9 EcSCA_722f female)
ATGGCGGTGCTCAAAGCACACAGGGTGCACAAAACGCACAATTTGTTAGG
CAGGGCAGGCTCCGGGCTCGGCAGGCGAAGGGGCAGCGGGATTGATCGAA
ACAACAGCAGCGACAGTTTGAAGCATGGCGAATACAATCGAGCGTGTAGG
GTAATTGTCGTGCTCGTCTTGTTCATGACGATCATCTCCGCTCCGAACCT
TTTTCTGGGTCCGAATGCTCTATTTTCGATGGCGGTGCTCAAAGCACACA
GGGTGCACAAAACGCACAATTTGTTAGGCAGGGCAGGCTCCGGGCTCGGC
AGGCGAAGGGGCAGCGGGATTGATCGAAACAACAGCAGCGACAGTTTGAA
GCATGGCGAATACAATCGAGCGTGTAGGGTAATTGTCGTGCTCGTCTTGT
TCATGACGATCATCTCCGCTCCGAACCTTTTTCTGGGTCCGAATGCTCTA
TTTTCGGTCAACATGTCCGCCCGTGAGGAGCATGAGAACGGCGCCCGGCC
CGGTATTCGTGGCCTTAGCGCATATCCTCCTATTGGAAGCCCGCCGGTAG
CATCATCACACGGACCTCGGCCAGCAGAAAGGCTTGGCGTTGCCAACACA
AATGGTGGAGTTGACGGGGCGCCGGGGGCGGGTGACTTGTGCCTGGGTAT
GGCCGTGGGCATAAGCCCCGCGCAACTCGTTACGTTTGCGGCATCCTTCC
GCGAGTTTGCGCCGTCGGCCGACCTATTTATATTCTTTGAGGCACCCACA
AGCGAACGGTTTAACGACATTATCGACACGTCAACATGTCCGCCCGTGAG
GAGCATGAGAACGGCGCCCGGCCCGGTATTCGTGGCCTTAGCGCATATCC
TCCTATTGGAAGCCCGCCGGTAGCATCATCACACGGACCTCGGCCAGCAG
AAAGGCTTGGCGTTGCCAACACAAATGGTGGAGTTGACGGGGCGCCGGGG
GCGGGTGACTTGTGCCTGGGTATGGCCGTGGGCATAAGCCCCGCGCAACT
CGTTACGTTTGCGGCATCCTTCCGCGAGTTTGCGCCGTCGGCCGACCTAT
TTATATTCTTTGAGGCACCCACAAGCGAACGGTTTAACGACATTATCGAC
ACGTTTATGATAACCCCGCTCGAGATCTCCAGGGAGCGACTGGAACCAGC
GTCCCTTCGCAGGTACCACCCTTCCTCCGCCCGCTGGATCATGATCCAAC
GGTTCTTGGACGTCAAGGGCCCCGAATACGAGCGCGTGTTGATGGTCGAC
GTGGGCCAGATATTTTTCCAGGCCAATCCTTTCGACATCATCGGGGACCC
TGGTTTATGATAACCCCGCTCGAGATCTCCAGGGAGCGACTGGAACCAGC
GTCCCTTCGCAGGTACCACCCTTCCTCCGCCCGCTGGATCATGATCCAAC
GGTTCTTGGACGTCAAGGGCCCCGAATACGAGCGCGTGTTGATGGTCGAC
GTGGGCCAGATATTTTTCCAGGCCAATCCTTTCGACATCATCGGGGACCC
TGGAGTATACACCTTCACGGACGACAAGCTTATCGGCAAGAGCCAGCAGC
ACTCCACCAAGATACAAGACTGTCTCGGGGGCTCGGTCCTCGCCAGACTC
GCCGACAAACCCGCCATCCACTCGGGCGTCAGCCTGGGAACGTCCAACCT
CGTCGTCGAGTACGCCCGCCAGATGTCGGAGGTCCTCTCCTCGGCAGGGT
TTCAGGCGTGCGAGAAAGCCGGTGTGGACGCGGCCTTGCACGACTATTTG
CTGTACAGCGGGGGGGTGCAGGGGGTGCTGACGTTCGACCAGTCTTCTGG
GCCCGTGACCGACGTGCCGGAGTATACACCTTCACGGACGACAAGCTTAT
CGGCAAGAGCCAGCAGCACTCCACCAAGATACAAGACTGTCTCGGGGGCT
CGGTCCTCGCCAGACTCGCCGACAAACCCGCCATCCACTCGGGCGTCAGC
CTGGGAACGTCCAACCTCGTCGTCGAGTACGCCCGCCAGATGTCGGAGGT
CCTCTCCTCGGCAGGGTTTCAGGCGTGCGAGAAAGCCGGTGTGGACGCGG
CCTTGCACGACTATTTGCTGTACAGCGGGGGGGTGCAGGGGGTGCTGACG
TTCGACCAGTCTTCTGGGCCCGTGACCGACGTGCCGGCCGGGAAGTTCGA
TATGTCTGGTTCCCGCGTGACAAACCTCGAGGGACGCGAGGTGCCGATAG
TGTATCGCTACGTCGAGAACGCTATCTTGACGGCCGAGGTCTTCAGGAGG
CCGGGAAGTTCGATATGTCTGGTTCCCGCGTGACAAACCTCGAGGGACGC
GAGGTGCCGATAGTGTATCGCTACGTCGAGAACGCTATCTTGACGGCCGA
GGTCTTCAGGAGGTACATCTACTGGAACCAGGAAGATAGTATCGTCAACC
CGGCTGGCAAGGAGAGGACTGTCGATGATAAGGCGGCCAACCCGGCAGTT
GTTCCTGCTACCGTCGAAAACTGCGAGCAGTTCGCGCTTTCGGAGGGGGT
TGATCTGTTCAAGGCCAAGTGCGACCTCACCAACGCGAGGTACATCTACT
GGAACCAGGAAGATAGTATCGTCAACCCGGCTGGCAAGGAGAGGACTGTC
GATGATAAGGCGGCCAACCCGGCAGTTGTTCCTGCTACCGTCGAAAACTG
CGAGCAGTTCGCGCTTTCGGAGGGGGTTGATCTGTTCAAGGCCAAGTGCG
ACCTCACCAACGCGAGGGTTGGTTCTCTCGGTGACTGCTGCGCCGCGTGT
GGCGGAAGGGCTGGCTGCTCAGCCTTTTCTTTCGACAAAAACTTTGGGCT
GTGCTACATGAAGAACTGCGACAGGCCGAACACGCCCGGATCCTCTGCTA
CCGCATGGAGCATTACCTCTGGGATAAGATTGAAGCAGACCTCGCAGTGA
GGTTGGTTCTCTCGGTGACTGCTGCGCCGCGTGTGGCGGAAGGGCTGGCT
GCTCAGCCTTTTCTTTCGACAAAAACTTTGGGCTGTGCTACATGAAGAAC
TGCGACAGGCCGAACACGCCCGGATCCTCTGCTACCGCATGGAGCATTAC
CTCTGGGATAAGATTGAAGCAGACCTCGCAGTGA
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