mRNA_Ecto-sp9_F_contig8946.17131.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI6_ECTSI) HSP 1 Score: 273 bits (699), Expect = 9.300e-88 Identity = 160/169 (94.67%), Postives = 162/169 (95.86%), Query Frame = 1
Query: 1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPAD-PAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENT 504
RVTWYENTDGEATFALGVDISTTAD AI LALADLDGDDDLDVISAS FSGLAXXXXXXXXXXXXXXX EPAD PAGGKDVVTADIDGDGD+DIISASFDGNHTAGNFPDGRILWLENDG GSFAEGRDVGLLDSARNVVAVDLDNDGDIDL+ACENVGGHIVWYENT
Sbjct: 81 RVTWYENTDGEATFALGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXEPADDPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGLGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLLACENVGGHIVWYENT 249
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: N/a (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI) HSP 1 Score: 266 bits (679), Expect = 1.440e-83 Identity = 157/169 (92.90%), Postives = 160/169 (94.67%), Query Frame = 1
Query: 1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPAD-PAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENT 504
RVTWYENTDGEATFA+GVDISTTAD AI LALADLDGDDDLDVISAS FSGLAXXXXXXXXXXXXXXX PAD PAGGKDVVTADIDGDGDIDIISASFDGNHTAG+FPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVAC+ VGG IVWYENT
Sbjct: 191 RVTWYENTDGEATFAVGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXXPADDPAGGKDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACDGVGGSIVWYENT 359
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI) HSP 1 Score: 214 bits (546), Expect = 8.760e-64 Identity = 133/178 (74.72%), Postives = 140/178 (78.65%), Query Frame = 1
Query: 1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAI 534
RVTWYENTDGEATFALGVDISTTAD A LALADLDGDDDLD++SAS SGLAXXXXXXXXXXXXXXX SFDGNHTAG+FPDGRILWLENDGSGSFAEG+D+GLL+SARNVVAVDLDNDGDIDLV C+ VGG IVWYENTDGTGNFSE I
Sbjct: 230 RVTWYENTDGEATFALGVDISTTADGAFTLALADLDGDDDLDIVSASVVSGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXSFDGNHTAGSFPDGRILWLENDGSGSFAEGKDIGLLESARNVVAVDLDNDGDIDLVTCDGVGGSIVWYENTDGTGNFSEVI 406
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE48_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.610e-27 Identity = 90/160 (56.25%), Postives = 103/160 (64.38%), Query Frame = 1
Query: 1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACENVG 477
RVTWYEN DGE TFA+G+D+STTAD A LA XXXXXXXXXXXXXXXSLE +PA KDVVT S+DG+H + N+ DGRI W+EN DG G+F EG D+ LDSAR VV VDLDNDGD+DLVAC+NVG
Sbjct: 120 RVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPA--KDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVG 276
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Fibronectin (type III domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DWC9_THETB) HSP 1 Score: 118 bits (295), Expect = 6.890e-27 Identity = 79/222 (35.59%), Postives = 108/222 (48.65%), Query Frame = 1
Query: 1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGLL-DSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYENL 660
++ WYEN DG TF +ST ADDA ++ AD+DGD DLD+ SAS + V+ ADIDGDGD+D+ SAS D D +I W EN DG+G+F + V D A +V+A D+D DGD+DL + I WYENT+G G+F + D+D+A+A+ D ++ WYENL
Sbjct: 392 KMAWYENIDGAGTFGPQQVVSTAADDARSVIAADIDGDGDLDLASASYSDDKIAWYANTDVAESFGPQQVVSTAADDAWSVIAADIDGDGDLDLASASRD---------DDKIAWYENTDGAGTFGPQQVVSTAADFAHSVIAADIDGDGDLDLASASYSDDKIAWYENTNGAGSFGPQ-QVVSTAAYWAQSVIAADIDGDGDMDLASASLRDDKIAWYENL 603
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Cadherin_4 (domain-containing protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9LJS4_9DELT) HSP 1 Score: 116 bits (291), Expect = 2.180e-26 Identity = 79/220 (35.91%), Postives = 105/220 (47.73%), Query Frame = 1
Query: 4 VTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGL-LDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYEN 657
+ WYENTDG+ F IS AD A + AD+DGD D+DV+SASA+ + D V DIDGDGD D++SAS + N +I W EN DG GSF + + L + A V A D+D DGD D+++ I WYENTDG G+F++ I D D+ +A+ ND +V WYEN
Sbjct: 312 IAWYENTDGKGNFGTEQIISVEADGASCVFAADVDGDGDIDVVSASAWDNKIAWYENTDGKGNFGSQKIISTDANWALSVFAGDIDGDGDADVVSASANDN---------KIAWYENTDGKGSFGTQKLISLEAEGASFVFAGDIDGDGDADVLSASANDNKIAWYENTDGKGSFAQQNTITTQADGVLSLSIADVDADG-DSDVISASLNDGKVAWYEN 521
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Por_Secre_tail (domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3PQL1_9BACT) HSP 1 Score: 115 bits (288), Expect = 5.130e-26 Identity = 75/223 (33.63%), Postives = 111/223 (49.78%), Query Frame = 1
Query: 1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGL-LDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFS--EAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYEN 657
++ WYENTDG TF IS A+ A ++ D+DGD D+DV+SAS + + + +ADIDGDGD+D++SASF D +I W EN DGSG+F + + + AR+V D+D DGD+D+++ + I WYENTDG G+F + I D D+D+ +A+ +D ++ WYEN
Sbjct: 269 KIAWYENTDGNGTFGTQQVISINANGATSVYCGDIDGDGDMDVLSASEDDNKIAWYENTDGNGTFGTQQVLTIAANTPESICSADIDGDGDMDVLSASFH---------DDKIAWYENTDGSGTFGTQQSITTDANGARDVCCADIDGDGDMDVLSASSTDDKIAWYENTDGNGSFGIQQVITTVADNARSVYSADLDGDG---DMDVLSASEDDDKIAWYEN 479
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Putative (secreted protein (Por secretion system target) n=1 Tax=Winogradskyella eximia TaxID=262006 RepID=A0A3D9H7P0_9FLAO) HSP 1 Score: 115 bits (287), Expect = 7.630e-26 Identity = 72/222 (32.43%), Postives = 114/222 (51.35%), Query Frame = 1
Query: 1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGL-LDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYENL 660
++ WYEN DG+ +F IST D+A+++ +D+DGD D+D++SAS + ++ G V ++D+DGDGD+D+ SAS D N +I W EN DG G+F + + D R+V D+D DGD+D+++ ++ I WYEN DG G+FS A I D+D+ +A+ D+++ WYEN+
Sbjct: 169 KIAWYENMDGQGSFGPQNVISTNTDEAMSVYSSDIDGDGDMDILSASRNDNKIAWYENIDGLATFGTQQIITSNAEGALAVRSSDVDGDGDLDVFSASLDDN---------KIAWYENMDGQGAFGIQQIISTNADQVRDVSVSDIDGDGDMDVISTDSGDNTISWYENIDGLGSFS-AQQIISKIVKQASSVLASDLDNDGDLDVISASYLDSKIAWYENI 380
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Por_Secre_tail (domain-containing protein n=1 Tax=Bacteroidetes bacterium RIFOXYA12_FULL_38_20 TaxID=1797368 RepID=A0A1F3PPP5_9BACT) HSP 1 Score: 114 bits (286), Expect = 9.640e-26 Identity = 75/221 (33.94%), Postives = 110/221 (49.77%), Query Frame = 1
Query: 1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDV-GLLDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYEN 657
++ WYENTD TF + IS + + AD+DGD D+DV+SAS + + +DV ADID DGD+D++SAS+D D I W EN DG+G+F + + L++ A++V D+D+DGD+D++A + G I W+ENTDGTG F + DID+ +A+ D E+ WYEN
Sbjct: 358 KIAWYENTDSAGTFGPELMISAFVNGVNTVCSADIDGDGDMDVLSASHYDDKIAWYENLDGLGTFGPQKIISILVENAQDVCCADIDNDGDLDVLSASYD---------DDMIAWYENTDGAGTFGPQQTITNLVNGAQSVYFADVDDDGDMDVLAAGYLSGKISWFENTDGTGVFGPQ-QVISSSVSGAYSVYCSDIDGDGDIDVLSASYWDDEIAWYEN 568
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Kordia aestuariivivens TaxID=2759037 RepID=UPI00165541A0) HSP 1 Score: 112 bits (281), Expect = 4.820e-25 Identity = 77/221 (34.84%), Postives = 107/221 (48.42%), Query Frame = 1
Query: 4 VTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGL-LDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYENL 660
V W+ENTDG+ F I+ AD A A+ D+DGD D+D++SAS+ + + V D+DGDGDID++SAS D +I W EN DG G+F + + D A +V A+D+DNDGD D+++ + I WYENT+G G F I DIDI A+R D++VVW+ENL
Sbjct: 523 VVWFENTDGQGNFGARQTITYNADFAQAVYAEDIDGDGDMDILSASSGDDKIAWYENTDGQGNFGTQQVISTNADSASSVYAIDLDGDGDIDVLSASR---------ADDKIAWYENTDGQGTFGAQQIITTDADFATSVYAIDMDNDGDNDVISASSTDDKIAWYENTNGQGGFGVQ-QIIVTNANGASSVYAADVDNDGDIDILAASRLDSKVVWHENL 733 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8946.17131.1 >prot_Ecto-sp9_F_contig8946.17131.1 ID=prot_Ecto-sp9_F_contig8946.17131.1|Name=mRNA_Ecto-sp9_F_contig8946.17131.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=220bp RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSback to top mRNA from alignment at Ecto-sp9_F_contig8946:3677..5426- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8946.17131.1 ID=mRNA_Ecto-sp9_F_contig8946.17131.1|Name=mRNA_Ecto-sp9_F_contig8946.17131.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1750bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8946:3677..5426- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8946:3677..5426- >mRNA_Ecto-sp9_F_contig8946.17131.1 ID=mRNA_Ecto-sp9_F_contig8946.17131.1|Name=mRNA_Ecto-sp9_F_contig8946.17131.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8946:3677..5426- (Ectocarpus species9 EcSCA_722f female)back to top |