mRNA_Ecto-sp9_F_contig8946.17131.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8946.17131.1
Unique NamemRNA_Ecto-sp9_F_contig8946.17131.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI6_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 9.300e-88
Identity = 160/169 (94.67%), Postives = 162/169 (95.86%), Query Frame = 1
Query:    1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPAD-PAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENT 504
            RVTWYENTDGEATFALGVDISTTAD AI LALADLDGDDDLDVISAS FSGLAXXXXXXXXXXXXXXX  EPAD PAGGKDVVTADIDGDGD+DIISASFDGNHTAGNFPDGRILWLENDG GSFAEGRDVGLLDSARNVVAVDLDNDGDIDL+ACENVGGHIVWYENT
Sbjct:   81 RVTWYENTDGEATFALGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXEPADDPAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGLGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLLACENVGGHIVWYENT 249          
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: N/a (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 1.440e-83
Identity = 157/169 (92.90%), Postives = 160/169 (94.67%), Query Frame = 1
Query:    1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPAD-PAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENT 504
            RVTWYENTDGEATFA+GVDISTTAD AI LALADLDGDDDLDVISAS FSGLAXXXXXXXXXXXXXXX   PAD PAGGKDVVTADIDGDGDIDIISASFDGNHTAG+FPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVAC+ VGG IVWYENT
Sbjct:  191 RVTWYENTDGEATFAVGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXXPADDPAGGKDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACDGVGGSIVWYENT 359          
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 8.760e-64
Identity = 133/178 (74.72%), Postives = 140/178 (78.65%), Query Frame = 1
Query:    1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAI 534
            RVTWYENTDGEATFALGVDISTTAD A  LALADLDGDDDLD++SAS  SGLAXXXXXXXXXXXXXXX                             SFDGNHTAG+FPDGRILWLENDGSGSFAEG+D+GLL+SARNVVAVDLDNDGDIDLV C+ VGG IVWYENTDGTGNFSE I
Sbjct:  230 RVTWYENTDGEATFALGVDISTTADGAFTLALADLDGDDDLDIVSASVVSGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXSFDGNHTAGSFPDGRILWLENDGSGSFAEGKDIGLLESARNVVAVDLDNDGDIDLVTCDGVGGSIVWYENTDGTGNFSEVI 406          
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE48_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.610e-27
Identity = 90/160 (56.25%), Postives = 103/160 (64.38%), Query Frame = 1
Query:    1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACENVG 477
            RVTWYEN DGE TFA+G+D+STTAD A  LA                      XXXXXXXXXXXXXXXSLE  +PA  KDVVT              S+DG+H + N+ DGRI W+EN DG G+F EG D+  LDSAR VV VDLDNDGD+DLVAC+NVG
Sbjct:  120 RVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGEPA--KDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVG 276          
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Fibronectin (type III domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DWC9_THETB)

HSP 1 Score: 118 bits (295), Expect = 6.890e-27
Identity = 79/222 (35.59%), Postives = 108/222 (48.65%), Query Frame = 1
Query:    1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGLL-DSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYENL 660
            ++ WYEN DG  TF     +ST ADDA ++  AD+DGD DLD+ SAS                      +          V+ ADIDGDGD+D+ SAS D         D +I W EN DG+G+F   + V    D A +V+A D+D DGD+DL +       I WYENT+G G+F     +                    D+D+A+A+  D ++ WYENL
Sbjct:  392 KMAWYENIDGAGTFGPQQVVSTAADDARSVIAADIDGDGDLDLASASYSDDKIAWYANTDVAESFGPQQVVSTAADDAWSVIAADIDGDGDLDLASASRD---------DDKIAWYENTDGAGTFGPQQVVSTAADFAHSVIAADIDGDGDLDLASASYSDDKIAWYENTNGAGSFGPQ-QVVSTAAYWAQSVIAADIDGDGDMDLASASLRDDKIAWYENL 603          
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Cadherin_4 (domain-containing protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9LJS4_9DELT)

HSP 1 Score: 116 bits (291), Expect = 2.180e-26
Identity = 79/220 (35.91%), Postives = 105/220 (47.73%), Query Frame = 1
Query:    4 VTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGL-LDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYEN 657
            + WYENTDG+  F     IS  AD A  +  AD+DGD D+DV+SASA+                    +   D      V   DIDGDGD D++SAS + N         +I W EN DG GSF   + + L  + A  V A D+D DGD D+++       I WYENTDG G+F++   I                    D D+ +A+ ND +V WYEN
Sbjct:  312 IAWYENTDGKGNFGTEQIISVEADGASCVFAADVDGDGDIDVVSASAWDNKIAWYENTDGKGNFGSQKIISTDANWALSVFAGDIDGDGDADVVSASANDN---------KIAWYENTDGKGSFGTQKLISLEAEGASFVFAGDIDGDGDADVLSASANDNKIAWYENTDGKGSFAQQNTITTQADGVLSLSIADVDADG-DSDVISASLNDGKVAWYEN 521          
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Por_Secre_tail (domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3PQL1_9BACT)

HSP 1 Score: 115 bits (288), Expect = 5.130e-26
Identity = 75/223 (33.63%), Postives = 111/223 (49.78%), Query Frame = 1
Query:    1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGL-LDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFS--EAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYEN 657
            ++ WYENTDG  TF     IS  A+ A ++   D+DGD D+DV+SAS                      +        + + +ADIDGDGD+D++SASF          D +I W EN DGSG+F   + +    + AR+V   D+D DGD+D+++  +    I WYENTDG G+F   + I    D                 D+D+ +A+ +D ++ WYEN
Sbjct:  269 KIAWYENTDGNGTFGTQQVISINANGATSVYCGDIDGDGDMDVLSASEDDNKIAWYENTDGNGTFGTQQVLTIAANTPESICSADIDGDGDMDVLSASFH---------DDKIAWYENTDGSGTFGTQQSITTDANGARDVCCADIDGDGDMDVLSASSTDDKIAWYENTDGNGSFGIQQVITTVADNARSVYSADLDGDG---DMDVLSASEDDDKIAWYEN 479          
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Putative (secreted protein (Por secretion system target) n=1 Tax=Winogradskyella eximia TaxID=262006 RepID=A0A3D9H7P0_9FLAO)

HSP 1 Score: 115 bits (287), Expect = 7.630e-26
Identity = 72/222 (32.43%), Postives = 114/222 (51.35%), Query Frame = 1
Query:    1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGL-LDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYENL 660
            ++ WYEN DG+ +F     IST  D+A+++  +D+DGD D+D++SAS                      +  ++  G   V ++D+DGDGD+D+ SAS D N         +I W EN DG G+F   + +    D  R+V   D+D DGD+D+++ ++    I WYEN DG G+FS A  I                    D+D+ +A+  D+++ WYEN+
Sbjct:  169 KIAWYENMDGQGSFGPQNVISTNTDEAMSVYSSDIDGDGDMDILSASRNDNKIAWYENIDGLATFGTQQIITSNAEGALAVRSSDVDGDGDLDVFSASLDDN---------KIAWYENMDGQGAFGIQQIISTNADQVRDVSVSDIDGDGDMDVISTDSGDNTISWYENIDGLGSFS-AQQIISKIVKQASSVLASDLDNDGDLDVISASYLDSKIAWYENI 380          
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: Por_Secre_tail (domain-containing protein n=1 Tax=Bacteroidetes bacterium RIFOXYA12_FULL_38_20 TaxID=1797368 RepID=A0A1F3PPP5_9BACT)

HSP 1 Score: 114 bits (286), Expect = 9.640e-26
Identity = 75/221 (33.94%), Postives = 110/221 (49.77%), Query Frame = 1
Query:    1 RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDV-GLLDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYEN 657
            ++ WYENTD   TF   + IS   +    +  AD+DGD D+DV+SAS +                    +        +DV  ADID DGD+D++SAS+D         D  I W EN DG+G+F   + +  L++ A++V   D+D+DGD+D++A   + G I W+ENTDGTG F     +                    DID+ +A+  D E+ WYEN
Sbjct:  358 KIAWYENTDSAGTFGPELMISAFVNGVNTVCSADIDGDGDMDVLSASHYDDKIAWYENLDGLGTFGPQKIISILVENAQDVCCADIDNDGDLDVLSASYD---------DDMIAWYENTDGAGTFGPQQTITNLVNGAQSVYFADVDDDGDMDVLAAGYLSGKISWFENTDGTGVFGPQ-QVISSSVSGAYSVYCSDIDGDGDIDVLSASYWDDEIAWYEN 568          
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Kordia aestuariivivens TaxID=2759037 RepID=UPI00165541A0)

HSP 1 Score: 112 bits (281), Expect = 4.820e-25
Identity = 77/221 (34.84%), Postives = 107/221 (48.42%), Query Frame = 1
Query:    4 VTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFSGLAXXXXXXXXXXXXXXXSLEPADPAGGKDVVTADIDGDGDIDIISASFDGNHTAGNFPDGRILWLEN-DGSGSFAEGRDVGL-LDSARNVVAVDLDNDGDIDLVACENVGGHIVWYENTDGTGNFSEAIDIAXDXXXXXXXXXXXXXXXXXDIDIATATRNDAEVVWYENL 660
            V W+ENTDG+  F     I+  AD A A+   D+DGD D+D++SAS+                     +   +      V   D+DGDGDID++SAS           D +I W EN DG G+F   + +    D A +V A+D+DNDGD D+++  +    I WYENT+G G F     I                    DIDI  A+R D++VVW+ENL
Sbjct:  523 VVWFENTDGQGNFGARQTITYNADFAQAVYAEDIDGDGDMDILSASSGDDKIAWYENTDGQGNFGTQQVISTNADSASSVYAIDLDGDGDIDVLSASR---------ADDKIAWYENTDGQGTFGAQQIITTDADFATSVYAIDMDNDGDNDVISASSTDDKIAWYENTNGQGGFGVQ-QIIVTNANGASSVYAADVDNDGDIDILAASRLDSKVVWHENL 733          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8946.17131.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.300e-8894.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
N/a1.440e-8392.90n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized8.760e-6474.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.610e-2756.25protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Fibronectin6.890e-2735.59type III domain-containing protein n=1 Tax=Thecamo... [more]
Cadherin_42.180e-2635.91domain-containing protein (Fragment) n=1 Tax=Desul... [more]
Por_Secre_tail5.130e-2633.63domain-containing protein n=2 Tax=Bacteroidetes Ta... [more]
Putative7.630e-2632.43secreted protein (Por secretion system target) n=1... [more]
Por_Secre_tail9.640e-2633.94domain-containing protein n=1 Tax=Bacteroidetes ba... [more]
T9SS4.820e-2534.84type A sorting domain-containing protein n=1 Tax=K... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8946contigEcto-sp9_F_contig8946:3677..5426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.4
Seed ortholog evalue2.3e-71
Seed eggNOG ortholog2880.D7FHI6
EggNOG free text desc.Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
EggNOG OGs29QRV@1,2RX97@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size660
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8946.17131.1prot_Ecto-sp9_F_contig8946.17131.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8946 3677..5426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.0477474-CDS-Ecto-sp9_F_contig8946:3676..37661622930953.0477474-CDS-Ecto-sp9_F_contig8946:3676..3766Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8946 3677..3766 -
1692278964.7608647-CDS-Ecto-sp9_F_contig8946:3676..37661692278964.7608647-CDS-Ecto-sp9_F_contig8946:3676..3766Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8946 3677..3766 -
1622930953.0869186-CDS-Ecto-sp9_F_contig8946:4575..49091622930953.0869186-CDS-Ecto-sp9_F_contig8946:4575..4909Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8946 4576..4909 -
1692278964.771991-CDS-Ecto-sp9_F_contig8946:4575..49091692278964.771991-CDS-Ecto-sp9_F_contig8946:4575..4909Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8946 4576..4909 -
1622930953.1029205-CDS-Ecto-sp9_F_contig8946:5190..54261622930953.1029205-CDS-Ecto-sp9_F_contig8946:5190..5426Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8946 5191..5426 -
1692278964.7818305-CDS-Ecto-sp9_F_contig8946:5190..54261692278964.7818305-CDS-Ecto-sp9_F_contig8946:5190..5426Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8946 5191..5426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8946.17131.1

>prot_Ecto-sp9_F_contig8946.17131.1 ID=prot_Ecto-sp9_F_contig8946.17131.1|Name=mRNA_Ecto-sp9_F_contig8946.17131.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=220bp
RVTWYENTDGEATFALGVDISTTADDAIALALADLDGDDDLDVISASAFS
GLAWYENSNGSGAFSLGVSLEPADPAGGKDVVTADIDGDGDIDIISASFD
GNHTAGNFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDI
DLVACENVGGHIVWYENTDGTGNFSEAIDIAIDIGVHSVSLIAVDLDGDG
DIDIATATRNDAEVVWYENL
back to top

mRNA from alignment at Ecto-sp9_F_contig8946:3677..5426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8946.17131.1 ID=mRNA_Ecto-sp9_F_contig8946.17131.1|Name=mRNA_Ecto-sp9_F_contig8946.17131.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1750bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8946:3677..5426- (Ectocarpus species9 EcSCA_722f female)
CGAGTCACGTGGTACGAAAACACGGACGGGGAGGCGACGTTTGCGCTCGG CGTTGATATCTCGACGACCGCCGACGATGCTATCGCGCTGGCTTTGGCGG ACTTAGACGGCGACGACGACCTCGACGTCATTTCGGCGTCCGCTTTCAGC GGCTTGGCGTGGTACGAGAACTCGAACGGGAGCGGGGCGTTTTCTCTGGG CGTGAGTTTAGAACCGGCCGACCCTGCTGGTGGCAAGTGAGTGTTGTGAA AGTAGGCAGGTGCGTTTGATAGGTCTCGTGTTGGCATAGGGTCGGTCACA TTGAGGTAGTTCTTCTATTTTGCTTTATTCTCGAGTTTGCTCCCAGAGCA GAAGAAAGAGAAAGAAAAGGGGGAGCTACAAAGCACCTCTTTACGTAAGT GCGATAGCCTTGTTAGTTCGGCAGGACGTATGTTTTCGCGATTACAGTAT GACGTATGTTCCGCAAATTGATTTTCGTCGAAATGGTTGATTGTATTGCC TCCCAATTCCACAAAAGGGACGTCGTTACGGCGGACATCGACGGAGACGG AGACATAGACATCATCTCAGCGTCATTCGACGGCAACCACACCGCCGGCA ACTTCCCTGACGGCCGCATACTCTGGCTCGAGAACGACGGCTCGGGAAGC TTCGCGGAGGGGAGGGACGTCGGCTTGCTCGATTCTGCGAGGAACGTGGT GGCCGTGGACCTCGACAACGACGGGGACATCGATCTGGTGGCCTGCGAAA ACGTCGGGGGGCACATCGTGTGGTACGAGAACACGGATGGGACGGGGAAT TTCTCTGAGGCCATCGACATCGCCATTGACATCGGGGTTCATTCGGTGAG TGTTTCAGACAATACAGCGCCGGCCCGCTTGTAAGAAATATGTTCGTGAG AAACCGAGGCTCAGATTTTATGAAAAGTGTCCTACGAAATTGAGCATTAC GGCCGGCGCTACACTAATTCCTACATAGAAGCCTTTGCTCGGTTGTGGGG ACCAACAAGATTTGAGCCTCGCTCAAAATAGGTGTTTATGAGCGGGAAGG TACTATGTTGTTGCGAAGGCTCCCGTCCACTGCTGCTGTCGATGCCGCGC TCATCGCGCGCAAGGACCCTATTGCTGTTGCCTCCATCCAAATGCAGCAG CATCGAGAATTTCACTCGACGTAAGTACAAGGATTGAGCCAATAACCGAC GGTCTCCATCCAAACGGAGCAATATCGAGACTTCATTCGACAAATAGAAC AAGGACAAAAAATGTTCGAAAGGGTGTGGGTGAGAGCGCCCACAGGCAGT ATATCCTGGGTTTCTCGCCGCCGGCAAAGTCGTTGTTGTTATTTCTGGGC ATGGTGCAACCTCATGGTTCCCACCACAGCAGTGTGCCCTGTCAGCAGAT ACATTGCAATGGTTCGACGTCGAGAAACGCGAGAGCCTAGTGCAGGTAGG GAGAGCGCAGAATTTTGAACCGTCGTAGCTGACGCATCGCATGCATGCCC CCGTTCTCATCCCTTGTCCACGCACAACCCTGACGAAATACCAGGCATGG TCCCGTTCTCATCCTCGACCGTGTACATCCCTGACGCAATGGCACGCACC ACGCATGCCCCTCGTCCACGCGTCCCCACCGTCATCTCAACAACGCTTCT CACCAATTAGTTGATCGCTGTTGACCTCGACGGTGACGGCGACATCGATA TAGCGACCGCAACGCGGAACGACGCCGAGGTGGTCTGGTACGAGAACCTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8946:3677..5426-

>mRNA_Ecto-sp9_F_contig8946.17131.1 ID=mRNA_Ecto-sp9_F_contig8946.17131.1|Name=mRNA_Ecto-sp9_F_contig8946.17131.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8946:3677..5426- (Ectocarpus species9 EcSCA_722f female)
CGAGTCACGTGGTACGAAAACACGGACGGGGAGGCGACGTTTGCGCTCGG
CGTTGATATCTCGACGACCGCCGACGATGCTATCGCGCTGGCTTTGGCGG
ACTTAGACGGCGACGACGACCTCGACGTCATTTCGGCGTCCGCTTTCAGC
GGCTTGGCGTGGTACGAGAACTCGAACGGGAGCGGGGCGTTTTCTCTGGG
CGTGAGTTTAGAACCGGCCGACCCTGCTGGTGGCAACGAGTCACGTGGTA
CGAAAACACGGACGGGGAGGCGACGTTTGCGCTCGGCGTTGATATCTCGA
CGACCGCCGACGATGCTATCGCGCTGGCTTTGGCGGACTTAGACGGCGAC
GACGACCTCGACGTCATTTCGGCGTCCGCTTTCAGCGGCTTGGCGTGGTA
CGAGAACTCGAACGGGAGCGGGGCGTTTTCTCTGGGCGTGAGTTTAGAAC
CGGCCGACCCTGCTGGTGGCAAGGACGTCGTTACGGCGGACATCGACGGA
GACGGAGACATAGACATCATCTCAGCGTCATTCGACGGCAACCACACCGC
CGGCAACTTCCCTGACGGCCGCATACTCTGGCTCGAGAACGACGGCTCGG
GAAGCTTCGCGGAGGGGAGGGACGTCGGCTTGCTCGATTCTGCGAGGAAC
GTGGTGGCCGTGGACCTCGACAACGACGGGGACATCGATCTGGTGGCCTG
CGAAAACGTCGGGGGGCACATCGTGTGGTACGAGAACACGGATGGGACGG
GGAATTTCTCTGAGGCCATCGACATCGCCATTGACATCGGGGTTCATTCG
GTGAGTGGACGTCGTTACGGCGGACATCGACGGAGACGGAGACATAGACA
TCATCTCAGCGTCATTCGACGGCAACCACACCGCCGGCAACTTCCCTGAC
GGCCGCATACTCTGGCTCGAGAACGACGGCTCGGGAAGCTTCGCGGAGGG
GAGGGACGTCGGCTTGCTCGATTCTGCGAGGAACGTGGTGGCCGTGGACC
TCGACAACGACGGGGACATCGATCTGGTGGCCTGCGAAAACGTCGGGGGG
CACATCGTGTGGTACGAGAACACGGATGGGACGGGGAATTTCTCTGAGGC
CATCGACATCGCCATTGACATCGGGGTTCATTCGGTGAGTTTGATCGCTG
TTGACCTCGACGGTGACGGCGACATCGATATAGCGACCGCAACGCGGAAC
GACGCCGAGGTGGTCTGGTACGAGAACCTCTTGATCGCTGTTGACCTCGA
CGGTGACGGCGACATCGATATAGCGACCGCAACGCGGAACGACGCCGAGG
TGGTCTGGTACGAGAACCTC
back to top