mRNA_Ecto-sp9_F_contig8909.17096.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8909.17096.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT6_ECTSI) HSP 1 Score: 932 bits (2409), Expect = 0.000e+0 Identity = 530/558 (94.98%), Postives = 537/558 (96.24%), Query Frame = 1
Query: 1 KPRLSRMCAALGKSHRWSKAVALSRWARALEKARADEFAEEMLRYEHARLFATLSSIRKRWELKQARRRFLGWRKRMRLERLAEDQDRSRVGAIKIQRWARRRLAARRXXXXLEQRERRRNALARDKADAVAGVLSFEDNRRETLWRTLRLVDEKRRYEANHRAATALQDAWLRHVGR-QDTTYAEMERQELHRRRLAEQARRWAVILPMARGFLSACLDRSQRAVIAKLRARHETLRLAYEAELAEHRRVLNAAHAVIAHAWRGKSSRLEFLARMKALVDVQRAWKRAAGRWRLQAEIDARVVATAQRIKKARESAASRLQAFARKSAQRHQLSKRFAARKAKLDFERRNRSELASACLVMFKPSRAIREAAGREDFEAMGDAVRPAEVVARLRASAAARGVSLSQIMSGAFDDDDGGXDEGGVAGEDGVPKRLSGSELARAVLKQQESQRRAAEAVQLAWRKRKAMLHLEGLFAKRKVKILNDRRELSALRLQRVWASARLRVELAARVEATRRRIAAERDWGARMLQRLCRRRKDAKELASRFAIRKIILEQVRA 1671
KPRLSRMCAALGKSHRWSK VALSRWARALEKARADEFAE+MLRYEHARLFATLSSIRKRWELKQARRRFLGWRKR+RL RLAED+ R+RVGAIKIQRWARRRLAARRXXXXLEQRERRRNALARDKADAVAGVLSFEDNRRETLWRTLRLVDEKRRYEANHRAATALQDAWLRHVGR Q YAEMERQELHRRRLAEQARRW VILPMARGFLSACLDRSQRAVIAKLRARHETLRLA+EAELAEHRRVLNAAHAVIAHAWRGKSSRLEFLARMKALVDVQRAWKRAAGR RLQAEID RVVATAQRIKKARESAASRLQAFARKSAQRHQLSKRFAARKAKLDFERRNRSELASACLVMFKPSRAIREAAGREDFEAMGDAVRPAEVVARLRASAAARGVSLSQIMSGAFDDDD D G GEDG PKRLSGSELARAVLKQQESQRRAAEAVQ AWRKRKAMLHLEGLFAKRKV+ILNDRRELSA RLQRVWASARLRVELAARVEATRRRIAAERDWGARMLQRLCRRRKDAKELASRFAIRKIILEQ R+
Sbjct: 150 KPRLSRMCAALGKSHRWSKTVALSRWARALEKARADEFAEDMLRYEHARLFATLSSIRKRWELKQARRRFLGWRKRVRLARLAEDEHRARVGAIKIQRWARRRLAARRXXXXLEQRERRRNALARDKADAVAGVLSFEDNRRETLWRTLRLVDEKRRYEANHRAATALQDAWLRHVGRCQLLEYAEMERQELHRRRLAEQARRWVVILPMARGFLSACLDRSQRAVIAKLRARHETLRLAHEAELAEHRRVLNAAHAVIAHAWRGKSSRLEFLARMKALVDVQRAWKRAAGRRRLQAEIDDRVVATAQRIKKARESAASRLQAFARKSAQRHQLSKRFAARKAKLDFERRNRSELASACLVMFKPSRAIREAAGREDFEAMGDAVRPAEVVARLRASAAARGVSLSQIMSGAFDDDDDDGDHEGGVGEDGAPKRLSGSELARAVLKQQESQRRAAEAVQHAWRKRKAMLHLEGLFAKRKVQILNDRRELSAFRLQRVWASARLRVELAARVEATRRRIAAERDWGARMLQRLCRRRKDAKELASRFAIRKIILEQARS 707
BLAST of mRNA_Ecto-sp9_F_contig8909.17096.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD4_9PHAE) HSP 1 Score: 842 bits (2176), Expect = 1.600e-295 Identity = 491/557 (88.15%), Postives = 501/557 (89.95%), Query Frame = 1
Query: 1 KPRLSRMCAALGKSHRWSKAVALSRWARALEKARADEFAEEMLRYEHARLFATLSSIRKRWELKQARRRFLGWRKRMRLERLAEDQDRSRVGAIKIQRWARRRLAARRXXXXLEQRERRRNALARDKADAVAGVLSFEDNRRETLWRTLRLVDEKRRYEANHRAATALQDAWLRHVGRQDTTYAEMERQELHRRRLAEQARRWAVILPMARGFLSACLDRSQRAVIAKLRARHETLRLAYEAELAEHRRVLNAAHAVIAHAWRGKSSRLEFLARMKALVDVQRAWKRAAGRWRLQAEIDARVVATAQRIKKARESAASRLQAFARKSAQRHQLSKRFAARKAKLDFERRNRSELASACLVMFKPSRAIREAAGREDFEAMGDAVRPAEVVARLRASAAARGVSLSQIMSGAFDDDDGGXDEGGVAGEDGVPKRLSGSELARAVLKQQESQRRAAEAVQLAWRKRKAMLHLEGLFAKRKVKILNDRRELSALRLQRVWASARLRVELAARVEATRRRIAAERDWGARMLQRLCRRRKDAKELASRFAIRKIILEQVRA 1671
K RLSRMCAALGKSHRWSKAVALSRWA+ALEKARADEFAEEMLRYEHARLFA LSSIRKRWELKQARRRFLGWRKR+RL RLAEDQD++RVGAIKIQRWARRRLAARR XX LEQRERRR ALARDKADA+AGVLSFEDNRR L YAEMERQELHRRRLAE ARRWAVILPMARGFLSACLDRSQRAVIAKLRARHETLRLAYEAELAEHRRVLNAAHAVI+HAWRGK RLEF+ARMKALVDVQRAWKRAAGR RLQAEIDARV ATAQRIKKARESAASRLQAFARKSAQRHQLSKRFAARKAKLDFERRNRSELASACLVMF+PSRAIREAAGREDFEAMGDAVRPAEVVARLRASAAARGVSLSQIMSGAFDDDDGG E GV GEDGVPKRLSGSELARAVLKQQESQRRAAEAVQLAWRKRKAMLHLEGLFAKRKVKILNDRRE SALRLQRVWASARLRVELAARVEATRRRIAAER+WGARMLQRLCRRRKDAKELASRFAIRKIILEQ R+
Sbjct: 548 KSRLSRMCAALGKSHRWSKAVALSRWAQALEKARADEFAEEMLRYEHARLFAMLSSIRKRWELKQARRRFLGWRKRVRLARLAEDQDQARVGAIKIQRWARRRLAARRRXXALEQRERRRIALARDKADAIAGVLSFEDNRRCQL-----------------------------------LEYAEMERQELHRRRLAEHARRWAVILPMARGFLSACLDRSQRAVIAKLRARHETLRLAYEAELAEHRRVLNAAHAVISHAWRGKRCRLEFVARMKALVDVQRAWKRAAGRRRLQAEIDARVAATAQRIKKARESAASRLQAFARKSAQRHQLSKRFAARKAKLDFERRNRSELASACLVMFEPSRAIREAAGREDFEAMGDAVRPAEVVARLRASAAARGVSLSQIMSGAFDDDDGGDXEDGV-GEDGVPKRLSGSELARAVLKQQESQRRAAEAVQLAWRKRKAMLHLEGLFAKRKVKILNDRRESSALRLQRVWASARLRVELAARVEATRRRIAAEREWGARMLQRLCRRRKDAKELASRFAIRKIILEQARS 1068 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8909.17096.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8909.17096.1 >prot_Ecto-sp9_F_contig8909.17096.1 ID=prot_Ecto-sp9_F_contig8909.17096.1|Name=mRNA_Ecto-sp9_F_contig8909.17096.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=551bp MCAALGKSHRWSKAVALSRWARALEKARADEFAEEMLRYEHARLFATLSSback to top mRNA from alignment at Ecto-sp9_F_contig8909:202..5569- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8909.17096.1 ID=mRNA_Ecto-sp9_F_contig8909.17096.1|Name=mRNA_Ecto-sp9_F_contig8909.17096.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5368bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8909:202..5569- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8909:202..5569- >mRNA_Ecto-sp9_F_contig8909.17096.1 ID=mRNA_Ecto-sp9_F_contig8909.17096.1|Name=mRNA_Ecto-sp9_F_contig8909.17096.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3306bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8909:202..5569- (Ectocarpus species9 EcSCA_722f female)back to top |