mRNA_Ecto-sp9_F_contig8903.17090.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY73_9PHAE) HSP 1 Score: 1101 bits (2847), Expect = 0.000e+0 Identity = 629/708 (88.84%), Postives = 641/708 (90.54%), Query Frame = 1
Query: 1 MRAPTAAAMPLVVLPLMLPMTQGVALSRMFATRQASLDQSGPAGMIRGVPSAAGLEPGKREGGKISRRNTESSGPLALLDVCYMADDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXXXXXXXXXTSDTPRDSSGDIMADQQDGEGGQLYDDGETSYGEYDXXXXXXXXXXDTITGSGLDRYWDGYSGRYRFGQYDYTTSSEATPRAQDNPLAEDSGTRPYEDRVGSPDNNHDDEKGTKFPXXXXXXSGASPKDDVVHEGGEGEESTAGPLSTSSTEESFTTICQPDYASGTIKTMASSEARVEAVAMDSQGNVFYSVSKGRSAGDAILRAASSSPXXXXXXXXXXXXXXXXXXXXXGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSRRQINPGGGVGAEDSSGTGVSRYDSFFEMPSETETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFGQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQQGVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTPISLCP 2124
MRA TAAA PLVVLPLMLPMT GVALSRMFATRQASLDQSGPA MIRGVPSAAGLE GKR+G KISRRNTES GPLALLDVCYM DDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXX +SDTPRDSSGDI+ DQ+D EGGQLYDDGE+SYGE XXXXXXXXXX +ITG GLDRYW GY GRY FGQYDYTTSSEATPR QDNP AEDSGTRP ED GSPD+N DDEKGT+FP SGASPKDD VHEGGEGEESTA PLSTSSTEES TTICQPDYASGTI+TMASSE RVEAVAMDSQGNVFYSVSKG+ GDAIL AASSSPXXXXXXXXXXXXXXXX GTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLS RQINPGGGVGAEDSS TGVSRYDS+FEMPSET TAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSF QKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQ GVVLKGIFPRQGG AQVRL+GGKWDSGVS SSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTA S AGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTP CP
Sbjct: 1 MRALTAAATPLVVLPLMLPMTHGVALSRMFATRQASLDQSGPARMIRGVPSAAGLEAGKRDGRKISRRNTESFGPLALLDVCYMTDDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXX-------SSDTPRDSSGDILTDQRDAEGGQLYDDGESSYGEXXXXXXXXXXXXXSITGPGLDRYWGGYFGRYSFGQYDYTTSSEATPRTQDNPSAEDSGTRPSEDPAGSPDSNQDDEKGTEFPPRHDETSGASPKDDGVHEGGEGEESTAAPLSTSSTEESSTTICQPDYASGTIETMASSETRVEAVAMDSQGNVFYSVSKGQGPGDAILWAASSSPXXXXXXXXXXXXXXXXTVVYVGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSWRQINPGGGVGAEDSSDTGVSRYDSYFEMPSETGTAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFSQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQ-GVVLKGIFPRQGGVAQVRLLGGKWDSGVSRSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTA--------SKAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTPTWPCP 692
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: NHL (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV4_ECTSI) HSP 1 Score: 1036 bits (2680), Expect = 0.000e+0 Identity = 578/715 (80.84%), Postives = 584/715 (81.68%), Query Frame = 1
Query: 1 MRAPTAAAMPLVVLPLMLPMTQGVALSRMFATRQASLDQSGPAGMIRGVPSAAGLEPGKREGGKISRRNTESSGPLALLDVCYMADDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXXXXXXXXX-------TSDTPRDSSGDIMADQQDGEGGQLYDDGETSYGEYDXXXXXXXXXXDTITGSGLDRYWDGYSGRYRFGQYDYTTSSEATPRAQDNPLAEDSGTRPYEDRVGSPDNNHDDEKGTKFPXXXXXXSGASPKDDVVHEGGEGEESTAGPLSTSSTEESFTTICQPDYASGTIKTMASSEARVEAVAMDSQGNVFYSVSKGRSAGDAILRAASSSPXXXXXXXXXXXXXXXXXXXXXGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSRRQINPGGGVGAEDSSGTGVSRYDSFFEMPSETETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFGQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQQGVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTPISLCP 2124
MRAPTAAA PLVVLPLMLPMT GVALSRMFATRQASLDQSGPAGMIRGVP AA LE GKREGGKISRRNTES GPLALLDVCYM DDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCD SH RCDDA+VPAHPTDEEHSHED XXXXXXXXXXXXXXXXXXX TSDTP+DSSGDIMADQQDGEGGQLYDDGETSYGEYD D ITGSGLDRYWDGYSGRY FGQYDYTTSSE TPRAQDNPLAEDSGTR YEDRVGSPDNNHDDEKGT+FP SGASPK D HEGGEGEEST GPLSTSSTEES TTICQPDYA+GTI+TMASSE RVEAVAMDSQ INPGGGVGAEDSSGTGVS YDSFFEM SETETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFGQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQ GVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPAS+AGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTP SLCP
Sbjct: 1 MRAPTAAATPLVVLPLMLPMTHGVALSRMFATRQASLDQSGPAGMIRGVPRAARLEAGKREGGKISRRNTESFGPLALLDVCYMTDDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDASHARCDDAVVPAHPTDEEHSHEDDFXXXXXXXXXXXXXXXXXXXXXXXXXXTSDTPKDSSGDIMADQQDGEGGQLYDDGETSYGEYDDVQYRHDKYDDRITGSGLDRYWDGYSGRYSFGQYDYTTSSEDTPRAQDNPLAEDSGTRLYEDRVGSPDNNHDDEKGTEFPPPHDETSGASPKADGAHEGGEGEESTTGPLSTSSTEESSTTICQPDYAAGTIETMASSETRVEAVAMDSQ-----------------------------------------------------------------------------------INPGGGVGAEDSSGTGVSMYDSFFEMTSETETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFGQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQ-GVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASEAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTPTSLCP 631
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Putative (NHL repeat containing protein n=1 Tax=Candidatus Sulfopaludibacter sp. SbA3 TaxID=2043164 RepID=A0A2N9M690_9BACT) HSP 1 Score: 94.4 bits (233), Expect = 3.880e-16 Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = 1
Query: 1795 GVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVV 2103
G SG+ GDGG A SA L +P G+ VD+ N+Y+AE +G ++R +S++GII+T GTG + GDGGPAS A L+LP A+ PS + IAD + +R V
Sbjct: 243 GPSGNPGDGGPATSASLIFPAGVVVDSAGNLYIAESEGNRVRKVSSTGIITTVAGTGMEKFSGDGGPASSATLNLPVALVLDPS---GNLYIADQNNRRIRRV 342
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: NHL (repeat-containing protein n=1 Tax=Spirosoma luteum TaxID=431553 RepID=UPI001FE0E2EF) HSP 1 Score: 90.5 bits (223), Expect = 6.860e-16 Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 1792 SGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTP 2109
+G+SG SGDGG A SA L P +A DA N+Y+A+ ++R ++TSGIIST G G + GDGG A+ AGL P +A+ S + IAD +N +R V+P
Sbjct: 78 TGISGFSGDGGAATSASLYGPADMAYDASGNLYIADIGNRRVRKVNTSGIISTVAGNGFVGFSGDGGAATAAGLYFPTGVAYDAS---GNLYIADANNNRIRKVSP 180
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI0019AF19FD) HSP 1 Score: 91.3 bits (225), Expect = 1.210e-15 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 1795 GVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTP 2109
G +GS+GDG A +A L YP +A DA N+Y+A++ +IR ++T GIIST GTG + GDG A+ A L+ P ++ F + + IADFG+N +R+VTP
Sbjct: 264 GTAGSTGDGSAATAAQLNYPAALAFDAVGNLYIADYNNHRIRKVTTGGIISTIAGTGIAGFNGDGVAAAAAQLNNPYSLTFDAA---GNLYIADFGNNRIRMVTP 365
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Uncharacterized (protein n=2 Tax=Larkinella rosea TaxID=2025312 RepID=A0A3P1BUU1_9BACT) HSP 1 Score: 91.7 bits (226), Expect = 2.710e-15 Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 1
Query: 1792 SGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTP 2109
+G G GDGG A SA L P + VDA N+Y+A++ +IR +S GII+T G G A+ GDGGPA+ A L PN + + + IAD G+N +R VTP
Sbjct: 304 NGTGGYGGDGGPATSAKLWLPNDVTVDAQGNLYIADYDNNRIRKVSPDGIITTVAGNGEAAFGGDGGPATSASLHRPNGVCVDAA---GNLYIADAGNNRIRKVTP 406
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: NHL (repeat-containing protein n=1 Tax=Bryobacter aggregatus TaxID=360054 RepID=UPI000AE92121) HSP 1 Score: 90.5 bits (223), Expect = 4.090e-15 Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 1
Query: 1654 MVWDIAVNSIGIVYFTTYVQQGVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVT 2106
+V +A ++ G V+FT + +F + +R+ G SGV+G SGDGG A+ A L P GIAVDA N+YVA++ ++IR IS +G+I+T G G Y GDGG A DA + P + + IA+ G + +R VT
Sbjct: 41 LVQGVATDTAGNVFFTAQSR-------VFKMEPSGNLIRIAG----SGVAGFSGDGGPAVDAQLRTPYGIAVDAAGNVYVADYGNDRIRIISPAGVINTFAGNGGHFYAGDGGQAKDAQMRTPRGVTVDKD---GNVYIAETGSHVIRKVT 177
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pontibacter arcticus TaxID=2080288 RepID=A0A364RCT9_9BACT) HSP 1 Score: 91.3 bits (225), Expect = 4.120e-15 Identity = 56/151 (37.09%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 1660 WDIAVNSIGIVYFTTYVQ---QGVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVV 2103
+ +AV++ G +YF Y + + GI G +GV+GS+GDGG+A++A ++ P GI +D NIY AE+Q KIR ISTSGII+T G G+ + GDGGPA+ A L P ++A + + I + +N +R V
Sbjct: 68 YGVAVDASGNIYFAEYQAHKIRKISTDGIISTIAG------------TGVNGSTGDGGQAVNAQISGPIGITLDNSGNIYFAEYQSNKIRKISTSGIITTVAGNGTAGFSGDGGPATSASLYYPWSVAVDAA---GNLLITYYQNNRIRKV 203
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Uncharacterized (protein n=1 Tax=Taibaiella sp. TaxID=1869185 RepID=UPI0019BC5C3C) HSP 1 Score: 87.4 bits (215), Expect = 8.910e-15 Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 1744 RQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVV 2103
R A +R + G +GVSG SGDGG A+ A G+ +DA NIY+A+ ++IR I+T+GI++T GTG++ GDGGPAS+A L+LP +A + + IAD+G+ +R +
Sbjct: 78 RVNAAGIIRTIAG---TGVSGFSGDGGPAIVAKFDQTAGLTLDAVGNIYIADQANQRIRKINTAGIVTTIAGTGASGGSGDGGPASNAQLNLPEDVAVDAA---GNIYIADYGNAKIRKI 191
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Match: Ricin (B-type lectin domain-containing protein n=2 Tax=Streptomyces spongiicola TaxID=1690221 RepID=A0A2S1Z8N4_9ACTN) HSP 1 Score: 88.6 bits (218), Expect = 1.040e-14 Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 1792 SGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASDAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVT 2106
+GV+G GDGG A SA L YP+G+AVD D +Y+A+ ++R I+ G IST GTG+ + GDGGPA+ A L P ++A + + IAD G++ +R VT
Sbjct: 79 TGVAGFGGDGGPAASAQLNYPRGLAVDGADAVYIADGNNHRVRKITPDGTISTVAGTGAAGFGGDGGPATSARLHTPLSVAVDGT---GDLYIADHGNHRIRKVT 180 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8903.17090.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8903.17090.1 >prot_Ecto-sp9_F_contig8903.17090.1 ID=prot_Ecto-sp9_F_contig8903.17090.1|Name=mRNA_Ecto-sp9_F_contig8903.17090.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=709bp MRAPTAAAMPLVVLPLMLPMTQGVALSRMFATRQASLDQSGPAGMIRGVPback to top mRNA from alignment at Ecto-sp9_F_contig8903:734..5144+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8903.17090.1 ID=mRNA_Ecto-sp9_F_contig8903.17090.1|Name=mRNA_Ecto-sp9_F_contig8903.17090.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4411bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8903:734..5144+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8903:734..5144+ >mRNA_Ecto-sp9_F_contig8903.17090.1 ID=mRNA_Ecto-sp9_F_contig8903.17090.1|Name=mRNA_Ecto-sp9_F_contig8903.17090.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4254bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8903:734..5144+ (Ectocarpus species9 EcSCA_722f female)back to top |