mRNA_Ecto-sp9_F_contig8892.17068.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8892.17068.1
Unique NamemRNA_Ecto-sp9_F_contig8892.17068.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8892.17068.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G060_ECTSI)

HSP 1 Score: 47.4 bits (111), Expect = 1.450e-5
Identity = 24/36 (66.67%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:    1 MEADGTTINGTMIDAPEQDISGDPAGVLSHMHTLRC 108
            M  DGTTING MIDAPEQD SGDPAG  +  H   C
Sbjct:    2 MVDDGTTINGIMIDAPEQDNSGDPAGFPATWHGPPC 37
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8892.17068.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.450e-566.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8892contigEcto-sp9_F_contig8892:3238..3940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size210
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8892.17068.1prot_Ecto-sp9_F_contig8892.17068.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8892 3238..3940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.6579058-CDS-Ecto-sp9_F_contig8892:3237..33151622930942.6579058-CDS-Ecto-sp9_F_contig8892:3237..3315Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8892 3238..3315 +
1692278959.5932555-CDS-Ecto-sp9_F_contig8892:3237..33151692278959.5932555-CDS-Ecto-sp9_F_contig8892:3237..3315Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8892 3238..3315 +
1622930942.682097-CDS-Ecto-sp9_F_contig8892:3570..36641622930942.682097-CDS-Ecto-sp9_F_contig8892:3570..3664Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8892 3571..3664 +
1692278959.6023712-CDS-Ecto-sp9_F_contig8892:3570..36641692278959.6023712-CDS-Ecto-sp9_F_contig8892:3570..3664Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8892 3571..3664 +
1622930942.7008376-CDS-Ecto-sp9_F_contig8892:3902..39401622930942.7008376-CDS-Ecto-sp9_F_contig8892:3902..3940Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8892 3903..3940 +
1692278959.6105866-CDS-Ecto-sp9_F_contig8892:3902..39401692278959.6105866-CDS-Ecto-sp9_F_contig8892:3902..3940Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8892 3903..3940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8892.17068.1

>prot_Ecto-sp9_F_contig8892.17068.1 ID=prot_Ecto-sp9_F_contig8892.17068.1|Name=mRNA_Ecto-sp9_F_contig8892.17068.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=70bp
MEADGTTINGTMIDAPEQDISGDPAGVLSHMHTLRCRTPSLSMRVLAGHL
EILVLAKVSGDLAWASLLY*
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mRNA from alignment at Ecto-sp9_F_contig8892:3238..3940+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8892.17068.1 ID=mRNA_Ecto-sp9_F_contig8892.17068.1|Name=mRNA_Ecto-sp9_F_contig8892.17068.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=703bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8892:3238..3940+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGCCGACGGCACCACCATCAACGGCACCATGATCGATGCTCCGGA
ACAGGACATCAGTGGTGACCCTGCTGGGGTGAGAAAGTTGCGCGGGCTTT
ATATTTCTGGTGTTTTTGCTGTTGTGCCGTGGGTTACGGAAACTGGTTGT
CTGCCTTTAGTCGTTGGCTCTCCCTTCTGGCTACTTTGCTTCCATGTGAA
AGGCTTTCAAGATGGGCCCATGAAGGATGCCTAAGGGGCGGGGGTGCGCA
AGGACAAGTGGGACAAGACTGGAAATATTTTGAATAAATACATGTGGGGT
GTTGTCCTTTCACGTCTGTCTTTCCTGCAGGAGGTCCTGTCGCATATGCA
TACACTTCGATGTCGGACGCCATCATTGTCTATGCGTGTGCTTGCCGGCC
ATCTCGAGATCCTTGTCCTAGCGAAAGGTGAAACCCGTGTAGGCTACAAG
TATGCGTTGCAAGGAAGGAAGGGCACAGCAGGCACGGCACGAAAGGGGCG
ACACACAAGAGACATTTTTTTTCAAGACTGGCAACACCCCTAGACCACAC
CTAGTCTAAAGTAGGTTGGGATCTGACGCTGGTGCGTGTAACAACAGGCG
TGTGTGCAGTTTTCGGCTGTTGTTGTATTTCTTGTCTTTTTTCCATTTAC
CGTCGTCGCTGGCAGTTTCCGGCGACTTGGCATGGGCCTCCCTGCTCTAC
TGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8892:3238..3940+

>mRNA_Ecto-sp9_F_contig8892.17068.1 ID=mRNA_Ecto-sp9_F_contig8892.17068.1|Name=mRNA_Ecto-sp9_F_contig8892.17068.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8892:3238..3940+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGCCGACGGCACCACCATCAACGGCACCATGATCGATGCTCCGGA
ACAGGACATCAGTGGTGACCCTGCTGGGATGGAGGCCGACGGCACCACCA
TCAACGGCACCATGATCGATGCTCCGGAACAGGACATCAGTGGTGACCCT
GCTGGGGTCCTGTCGCATATGCATACACTTCGATGTCGGACGCCATCATT
GTCTATGCGTGTGCTTGCCGGCCATCTCGAGATCCTTGTCCTAGCGAAAG
GTCCTGTCGCATATGCATACACTTCGATGTCGGACGCCATCATTGTCTAT
GCGTGTGCTTGCCGGCCATCTCGAGATCCTTGTCCTAGCGAAAGTTTCCG
GCGACTTGGCATGGGCCTCCCTGCTCTACTGATTTCCGGCGACTTGGCAT
GGGCCTCCCTGCTCTACTGA
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