mRNA_Ecto-sp9_F_contig889.17066.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig889.17066.1
Unique NamemRNA_Ecto-sp9_F_contig889.17066.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Match: G-patch_2 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L2_ECTSI)

HSP 1 Score: 917 bits (2369), Expect = 0.000e+0
Identity = 623/670 (92.99%), Postives = 627/670 (93.58%), Query Frame = 1
Query:    1 MASSKPKKGFSMSLGKPKQASSSATSAKGLDRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANGSNAAAAATXXXXXXXXXXXERPPTAEDPAGEKSLDQLAAEAIAKESVRGDGSSADAFGLGLDSDRVIGMIGKNPAAGEGDSSNGXXXXXXXXXXAGSKRKTGLLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMKRPRKKKPGEKLRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSENKDRSSRSSXXXXXXXXXXXXXXXXXSGSVEREDVRRERRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEIDRHRLRDGRRDDDDGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEGVKERHLETVLPSRGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAEFTGMLDEDMEDVGY 2010
            MASSKPKKGFSMSLGKPKQ+SSSATSAKG DRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANGSNAAAAA XXXXXXXXXXX RPPTAE+PAGEKSLDQLAAEAIAKESVRGDGSSADAFGLGLDSDRVIGMIGKNPAAGEGDSSNG          AGSKR TGLLEQNMIPGLMEVDGEDAKFRHDLGHRAED SARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXX PDLSKDIEPRHHRLGLGAQPKPPEEMKRPR KKPGEK RSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGE GRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDK+TATRVSEDELARRPFSENKDRSSRSSXXXXXXXXXXXXXXXXXSGSVERED RRERR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  G R XXXXXXXXXXXXXXXXXXXXXXXXXXXX GGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPR GQATVRMDLGELVLEGVKERHLETVLP+RGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAEFTGMLDEDMEDVGY
Sbjct:    1 MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANGSNAAAAAXXXXXXXXXXXXXRPPTAEEPAGEKSLDQLAAEAIAKESVRGDGSSADAFGLGLDSDRVIGMIGKNPAAGEGDSSNGAATAKTTPDAAGSKRNTGLLEQNMIPGLMEVDGEDAKFRHDLGHRAEDFSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXGPDLSKDIEPRHHRLGLGAQPKPPEEMKRPRTKKPGEKPRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGERGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKSTATRVSEDELARRPFSENKDRSSRSSXXXXXXXXXXXXXXXXXSGSVEREDGRRERRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRAGQATVRMDLGELVLEGVKERHLETVLPARGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAEFTGMLDEDMEDVGY 670          
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Match: DExH-box (splicing factor binding site-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA3_9STRA)

HSP 1 Score: 189 bits (480), Expect = 5.960e-49
Identity = 138/293 (47.10%), Postives = 162/293 (55.29%), Query Frame = 1
Query:  373 AGEKSLDQLAAEAIAKES------VRGDGSSADAFGLGLDSDRVIGM-IGKNPAAGEGDSSNGXXXXXXXXXXAGSKRKTGLLEQNMIPGLMEVDGED-AKFRHDLGHRAEDLSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMK--RPRKKKPGEKLRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFS 1221
            A EKSLD+LAAE + +E+      ++ +    DA GLGLDSDRVI M +    AAG                     RK G+LE  MIPGL EV G D AK +HDL  RA D+ A+S  Y  VPV EFGAALLRGMGW GP  +                 EPRHHRLGLGA PKPPEE    RPRK+KPGEK  + D E    W  K       A+  +AAA+L V  VVEL+         R RAMVLKTQGVPGL KI VR+E  G +  V +     V EDELA +PF+
Sbjct:    8 AKEKSLDELAAEELVREADEERRQLQRNSRGTDA-GLGLDSDRVIAMKVAAEQAAGA--------------------RKRGILEAAMIPGLNEVAGGDGAKLKHDLAIRAADIDAKSDVYRHVPVEEFGAALLRGMGWAGPAPEDKEGNANPLGT-----AEPRHHRLGLGAAPKPPEEKHGDRPRKRKPGEKANARDEELRAAWAAKA------AAASAAAARLTVGQVVELTA-------TRRRAMVLKTQGVPGLGKIMVRLEQGGAEEAVSRTDMQLVPEDELALKPFT 261          
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSS7_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.110e-42
Identity = 164/464 (35.34%), Postives = 222/464 (47.84%), Query Frame = 1
Query:  595 LLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMKRPRKKKPGEKLRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSENKDRSSRSSXXXXXXXXXXXXXXXXXSGSVEREDVRRERRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEIDRHRLRDGRRDDDDGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQQSGPP------AWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEGVKERHLETVLPSRGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAE 1968
            LL Q M+PGL E++ EDAKF+HDL +RAEDL A+ +AY  + + +FGAA+LRGMGW GP  +              K    RHHRLGLGA P     +  P+ K    + R+ +A   K WE K Q ER R     A+ +L + DVV + +G   G R R    V  T GVPGL++I VR+E+TG    + +  A RV  +EL  RPF + +   + +                   G+++RE                                                          RD D G             XXXXXXXXXXXXXXXXXXX   + G P       WL  N++VR++ K  G G  +  K  V+DV    +A +R+  G +V E VK+RHLETV+P  GG+V  VRG  +G  G +L K+ ++E  +VQ+ ED   V  + DDVAE
Sbjct:   50 LLLQGMVPGLNEIESEDAKFKHDLRYRAEDLGAKDEAYQRIKIDDFGAAMLRGMGWTGPTKEEEELH--------KKQHGARHHRLGLGAAPAA---ILEPKGKGRAARKRADEAN--KEWEAKAQAERERLKE--ASKRLKIGDVVWIRKGDHVGVRGR----VELTVGVPGLDRIRVRLEETGAAADIPRQDAARVGHEELDERPFVDGEAPKAANGGGGGGESRYL--------GNIKRE----------------------------------------------------------RDGDGG-------------XXXXXXXXXXXXXXXXXXXXXXEEGAPRGDDGFCWLLPNVKVRIVSKKAGDGTLFKEKAAVLDVLAEKRANLRLASGRMV-ERVKQRHLETVVPKAGGRVRAVRGERRGQDGLVLEKHTDRERVMVQMDEDNEIVPFTFDDVAE 414          
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQG0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.620e-34
Identity = 175/543 (32.23%), Postives = 255/543 (46.96%), Query Frame = 1
Query:  370 PAGEKSLDQLAAEAIAKESVRGDGSSADAFGLGLDSDRVIGMIGKNPAAGEGDSSNGXXXXXXXXXXAGSKRKTGLLEQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXXPDLSKD--IEPRHHRLGLGAQPKPPEEMKRPRKK----KPGEKLRSSDAERLK-----IWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSENKDRSSRSSXXXXXXXXXXXXXXXXXSGSVEREDVRRERRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEIDRHRLRDGRRDDDDGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEGVKERHLETVLPSRGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVA 1965
            PA  K+LDQ+AA  +  +  +G     D   L +        I + P A E  ++            +  K+K  LL  N+ P L+ +  +  +F++D+  RAEDL+ RS+ Y  +PV++FGAALLRGMGW GP+ D           +  KD  +  R  RLGLGAQ +PPE  K         K G      + E+ K      WE+K  E+RL + R      L   DVV L       GRR   A+V+  +GVPGL+++ +++E +G  + V +     + +DELA  PF E ++                       +   E ++V+ E                                        D+ I         + +D       XXXXXXXXXXXXXXXXXXXXXXXXX    +      WLR  IRV+++ KS GG ++YL KG V+DV   G+A+VR+D    V++ V ERH+ET+LP+  G  +V+ G  KG     L K  + +  +VQ+ EDL  V + +D +A
Sbjct:   89 PAAAKTLDQIAAAELLADLQKGSTEDEDEANLLV--------IKQTPTAAEAAANQ-------TDNNSQVKKKAPLLMLNVAPELLSITNDADRFKYDVSSRAEDLNVRSEIYDAIPVSQFGAALLRGMGWAGPDKD----------EEKKKDEKLVAREQRLGLGAQARPPERAKSNNSNNILGKTGTSTARDEEEKRKESXXXXWEQKA-EQRLHSQR------LQDEDVVWLRGPAELSGRR---AVVVTAKGVPGLDRVRIQLEHSGRILEVGRKECVLLPDDELATTPFVEAENHKQLRQEQQEKQKVVQYNGLKQEN---ENKEVKTE-------------------------------------SSGDKAI---------KGEDVKTEHKHXXXXXXXXXXXXXXXXXXXXXXXXXTQAKEYVQTVFWLREGIRVKIVSKSVGGSKSYLQKGTVLDVYARGKASVRLD-DRTVIDNVNERHVETILPATNGPCVVLLGEYKGQHAVCLEKRNDTQRVVVQLNEDLDVVEMDMDSIA 546          
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ELZ5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 9.180e-26
Identity = 194/490 (39.59%), Postives = 254/490 (51.84%), Query Frame = 1
Query:  649 KFRHDLGHRAEDLSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXXPDLSKDIEPRHHRLGLGAQPK------PPEEMKRPRKKKPGEKLRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELS--------EGGGE---GGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSENKDRSSRSSXXXXXXXXXXXXXXXXXSGSVEREDVRRERRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEIDRHRLRDGRRDDDDGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQQ----------SGPPA-------------WLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEGVKERHLETVLPSRGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAEFTGMLDEDME 1998
            KF  D+     D+S +S+ Y  VP+ EFGAA+LRGMGW G   +          P       PR  RLGLGA PK       P+   R R ++  +  R    ERLK  ++++++ER R         L +  +V +S        +GG +   G ++R RAM+ +  GVPGLN I V+ E     + V K +   V  ++L  RPF E +    R +                  G  E++D       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     XXXXXXXXXXX XXXXXXXXXXXXX       +Q          S  P+             WL  NIRVRV+   YG    Y  KG V+DV R G AT++M  G+++     ERHLET LP  GG  I++ G ++ + G+LL ++ +K   +VQV+ED+  VT SLDD+AE+ G LD+D+E
Sbjct:   90 KFEDDIEELPPDISVKSQVYKTVPIVEFGAAMLRGMGWTGGNENNNRKNNKNADPTTM----PRPSRLGLGATPKMMASGDAPDTHSRRRPRRQDQVQRE---ERLKRQQEEMEKERHRQFALDKQRVLQLGSIVCVSTNXXXXXTDGGDDRRRGQKQRSRAMIKQLSGVPGLNMILVQYEGDTTPIKVKKGSIELVDRNDLNERPFQEAQKEHRRKTR----------------EGDREKQDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXPKRKRDDEQRXXXXXXXXXSSRPSESNNNSLADDSASWLIPNIRVRVVSSKYGRS-VYKEKGVVIDVTRKGVATLKMGSGQVI--SAPERHLETALPKAGGNAIILSGDQRFSKGQLLERDGKKNRGVVQVFEDMSIVTTSLDDMAEWCGPLDDDLE 553          
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZH80_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.650e-25
Identity = 194/548 (35.40%), Postives = 257/548 (46.90%), Query Frame = 1
Query:  436 DGSSADAFGLGLDSDRV-IGMIGKNPAAGEGDSSNGXXXXXXXXXXAGSKRKTGLLEQNMIPGLMEVDGEDAK-FRHDLGHRAEDLSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXXPDLSKDIEPRHHRLGLGAQPK------PPEEMKRPRKKKPGEKLRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRR-PRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSENKD-------------------RSSRSSXXXXXXXXXXXXXXXXXSGSVEREDVRRERRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEIDRHRLRDGRRDDDDGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEGVKERHLETVLPSRGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAEFTGMLDEDM 1995
            DG+S+D  G   D DR  I  + +  AA +G   +G                T   ++    G+     ED K    D+     D+S +S+ Y  VP+ EFGAA+LRGMGW G + +            +     PR  RLGLGA PK       P+   R R ++  +  R    ERL                      L +  +V +   G    + + PRA + +  GVPGLN I V+ E         K +   V    L  RPF E ++                   RSSR                     S + ED R ++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       R RDG  +      XXXXXXXXXXXXX                  G  +   +WL  NIRVR++   YG    Y  KG VVDV R G AT++M  G+++   V ERHLET LP  GG  I++ G ++ + G+LL ++ +K   +VQ++ED+  VT SLDD+AE+ G LD+D+
Sbjct:  129 DGNSSD--GATTDRDRAAIEALEREAAAAQGGGHDGTVSGSSQKRVIAVSGDTFQRQRERERGIDPTKTEDQKKLDEDIEDLPPDISVKSQVYKKVPIGEFGAAMLRGMGWTGGDNNSSNKRKNNDATTM-----PRPSRLGLGATPKMFATGDAPDTHSRRRPRRQDQVQRE---ERLXXXXXXXXXXXXXXLALDKQRVLQIGSIVYVQRDGDRSRKEQLPRARIKQLAGVPGLNMILVQYEGDAAPTKTKKGSIELVDRSHLNERPFQEAEEDRRKKSREGDRGERERDPKRSSRGDCSDGRRRDKMGSRDRSYRASDDYEDGR-DKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRYRDG--NCXXXXXXXXXXXXXXXXXXDDSSKRHQSSRPSGKTNSGSLAFSESWLTPNIRVRIVSSKYGRSM-YKEKGVVVDVTRNGVATLKMGSGQVLT--VPERHLETALPKAGGNAIILSGHQRFSKGQLLERDGKKNRGVVQIFEDMSVVTTSLDDMAEWCGPLDDDL 660          
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Match: G-patch_2 (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB44_THAPS)

HSP 1 Score: 120 bits (302), Expect = 1.630e-24
Identity = 186/492 (37.80%), Postives = 236/492 (47.97%), Query Frame = 1
Query:  652 FRHDLGHRAEDLSARSKAYVDVPVAEFGAALLRGMGWKGPEGD-----------GXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKP---------------------PEEMKRPRKKKPGEKLRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGR-RRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDELARRPFSE-NKDRSSRSSXXXXXXXXXXXXXXXXXSGSVER-EDV----RRERRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEIDRHRLRDGRRDDDDGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQ----ATVRMDLGELVLEGVKERHLETVLPSRGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAEFTGMLDEDME 1998
            F+ +L H A D+   S  Y +V + +FG+ALLRGMGW G               G         P   + I+PR HRLGLGA P P                     PEE+KR       E++R+ +    K  EK      ++          +V+ V + S+  G  GR R  RA+V K  GVPGLN++ V+ME + E V V K + T  S DEL   PF   N   SS  S                 SG   R EDV     R +R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          D +        XXXXXXXXXX                       +     WL  NIRVR +       + YL KG V DV +  Q    A + MD    VL+ + ER+LET LP  GG VIV+ G  +   G+LL ++    + +VQ++EDL  V +SLD VAE+ G +D+D+E
Sbjct:  252 FKQELAHHAADVDPTSNVYANVSIGDFGSALLRGMGWNGSASGNINNNGNSRLGGGAKRLGGSKPTDEEVIKPRPHRLGLGATPLPXXXXXXXXXXXXXXXXXXXXXPEEVKREE-----ERVRAQEEIERKAAEK------IKLDVQVTLQNGSVVWVRKESDDVGRSGRGRAQRAVVAKAAGVPGLNRLLVKMEGSTEDVSVTKGSVTLCSWDELKENPFRMVNAKTSSMQSKESES------------SGERHRREDVDDGLTRRKRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHDSKESSXXXXXXXXXXXXXXXRSPDDRHSSNRSKHHLSSSHNHSKQQHLHWLLPNIRVRFVSNKI--PKFYLQKGIVQDVIQSQQSSPKAVLLMDSNGQVLDNIPERYLETALPKTGGNVIVLEGRYRWKKGRLLERSSGDGSGVVQLFEDLEVVNISLDSVAEWCGPVDDDLE 718          
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Match: KN17_SH3 (domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVK9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.340e-24
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = 1
Query: 1636 AWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEGVKERHLETVLPSRGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAEFTGMLDEDME 1998
            +WL  NIRVRVI   YGG   Y  KG VVDV R G AT++M  G+++   V ERHLET LP  GG  I++ G ++ + G+LL ++ +K   +VQV+ED+  +T SLD++AE+ G LD+D+E
Sbjct:    3 SWLIPNIRVRVISSKYGGS-VYKEKGVVVDVTRRGVATLKMGNGQVI--NVAERHLETALPKAGGNSIILSGDQRHSKGRLLERDSKKNRGVVQVFEDMSVITTSLDEMAEWCGPLDDDLE 120          
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Match: G (patch domain and KOW motifs-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KES9_FISSO)

HSP 1 Score: 112 bits (281), Expect = 1.080e-22
Identity = 127/450 (28.22%), Postives = 188/450 (41.78%), Query Frame = 1
Query:  649 KFRHDLGHRAEDLSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXXPDLSKDIEPRHHRLGLGAQPKPPEEMKRPRKKKPGEKLRSSD-AERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDK-ATATRVSEDELARRPFSENKDRSSRSSXXXXXXXXXXXXXXXXXSGSVEREDVRRERRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEIDRHRLRDGRRDDDDGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEGVKERHLETVLPSRGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAEFTGMLDED 1992
            ++  DL    E+L+  S+ Y  VP+AEFG+ALLRGMGW G E  G          D    + PR HRLGLGA P   E ++    KKP   LR     ++ K+ +K+ + E+ R  +     Q  + D   +  G         RA +++  GVPGLN + ++ E   E  +V + A    +   EL  RPF                            S ++++ED RR+                                         EE +R +L+  R DDD                                           W+  +IRVR+I +  G  R +  K  VVDV   G AT+++D G  +L+ V ER+LET LP  GG V++++  +    G+LL K   + T +VQ  ED+   TLSLDD+AE+ G +DE+
Sbjct:  112 QYEQDLQRLPEELNIHSEQYQRVPIAEFGSALLRGMGWTGEESKG----------DTEMSM-PRPHRLGLGATPDLSEPVQL--SKKP---LRPDQFQQQAKLQKKREEYEKQRIEQKKWDKQRTLQDGSLIMVGS-------KRAQIIQLVGVPGLNNVKIQFEGDSEHTIVKRGALGDLLLRSELEERPFR------------------------YAESTNIKKEDSRRD------------------------PLNDDGHRANTKRKDRKEEDERKKLKRSRLDDD--------------------------------------RSALKWVVPHIRVRIITEKLG-RRYFKEKAVVVDVTPKG-ATLQLDSGT-ILDKVPERYLETALPKTGGLVVILK--DHHPKGRLLEKG--RSTGVVQYLEDMTVETLSLDDLAEWMGSVDEE 445          
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCG7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.970e-22
Identity = 217/589 (36.84%), Postives = 275/589 (46.69%), Query Frame = 1
Query:  649 KFRHDLGHRAEDLSARSKAYVDVPVAEFGAALLRGMGWKGPEGDGXXXXXXXXXPDLSKD-----------IEPRHHRLGLGAQPKPPE---------------------------EMKRPRKKKPGEK------LRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEGGGEGGRRRPRAMVLKTQGVPGLNKISVRMED--TGEKVLVDKATATRVSEDELARRPF---------------SENKDRSSRSSXXXXXXXXXXXXXXXXXSGSVEREDVRRERRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEIDRHRLRDGRRDDDDGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----------------------------------------------------------GQQSGPPA-----------------WLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRVG-QATVRMDLGELVLEGVKERHLETVLPSRGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLSLDDVAEFTGMLDEDMED 2001
            K++ DL HRAED+S  S AYV VP++EFGAA+LRGMGW G               D SKD           I PR HRLGLGA P PP                              KR R +K G         +  +AER   W+ K+ E++ R        Q+  +  V  + G  +  R R RA ++K  GVPGLN+I V+ E    G    + K   + V  + L R PF               +EN++ + R                   S +++ +  RR+ R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                            G+ S  P+                 WL +NIR+RV+ K    GR +  KG VVDV R G +AT++M  GE +LE + ER+LET LP  GG VI++ G+ K   GKLL ++ EK   +VQ++ED+   TLSLDD+AE+ G LD+ + D
Sbjct:   71 KYQRDLAHRAEDVSVTSSAYVSVPISEFGAAMLRGMGWSGN--------------DKSKDKXXXXXXXXXXIAPRPHRLGLGATPLPPSMSSGRGGTYNGTNTGXXXXXXXXXXXXXXKRHRARKGGSMEDIARVTKDEEAERQ--WKLKLLEKKKR--NVQVTQQVGSIVYVHDNYGDRDSRRVRRRAKLVKIAGVPGLNRILVQYEHEAAGATTSIKKREVSLVDPEALERSPFQKVRGQDKGQIYTKINENRNGNDRVDSERKSTTGNSRKRDDR-SSAIDAKTSRRKSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEYSSKPSSSNSEHRGSRREKAEQHWLVSNIRIRVVTKKIAKGRQFKQKGIVVDVLRKGSEATLQMSNGE-ILERIPERYLETALPKVGGNVIILTGSNKFEKGKLLERDSEKGRGVVQLFEDMHVKTLSLDDIAEYCGPLDDALAD 639          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig889.17066.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G-patch_20.000e+092.99domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
DExH-box5.960e-4947.10splicing factor binding site-domain-containing pro... [more]
Hypothetical4.110e-4235.34protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical3.620e-3432.23protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Hypothetical9.180e-2639.59protein n=1 Tax=Pseudo-nitzschia australis TaxID=4... [more]
Uncharacterized5.650e-2535.40protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]
G-patch_21.630e-2437.80domain-containing protein n=1 Tax=Thalassiosira ps... [more]
KN17_SH34.340e-2447.93domain-containing protein n=1 Tax=Fragilariopsis c... [more]
G1.080e-2228.22patch domain and KOW motifs-containing protein n=2... [more]
Hypothetical5.970e-2236.84protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig889contigEcto-sp9_F_contig889:12547..19615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score927.9
Seed ortholog evalue2.6e-267
Seed eggNOG ortholog2880.D7G7L2
Preferred nameGPKOW
KEGG rclassRC00010
KEGG koko:K10798,ko:K13101,ko:K13566
KEGG ReactionR00269,R00348
KEGG Pathwayko00250,ko03410,ko04210,ko04212,ko04214,ko04217,map00250,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
GOsGO:0000375,GO:0000377,GO:0000398,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009870,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.defense response signaling pathway, resistance gene-dependent
EggNOG OGsKOG4315@1,KOG4315@2759
EC2.4.2.30,3.5.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHomologue of Arabidopsis MOS2 (MODIFIER OF SNC1, 2)
Ec32 orthologEc-22_001960.1
Exons7
Model size2446
Cds size2013
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig889.17066.1prot_Ecto-sp9_F_contig889.17066.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig889 12980..19615 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.3648217-UTR-Ecto-sp9_F_contig889:12546..129791622930942.3648217-UTR-Ecto-sp9_F_contig889:12546..12979Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig889 12547..12979 -
1692278959.4244444-UTR-Ecto-sp9_F_contig889:12546..129791692278959.4244444-UTR-Ecto-sp9_F_contig889:12546..12979Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig889 12547..12979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.3848534-CDS-Ecto-sp9_F_contig889:12979..130751622930942.3848534-CDS-Ecto-sp9_F_contig889:12979..13075Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 12980..13075 -
1692278959.4378474-CDS-Ecto-sp9_F_contig889:12979..130751692278959.4378474-CDS-Ecto-sp9_F_contig889:12979..13075Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 12980..13075 -
1622930942.3986783-CDS-Ecto-sp9_F_contig889:13814..139481622930942.3986783-CDS-Ecto-sp9_F_contig889:13814..13948Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 13815..13948 -
1692278959.4470983-CDS-Ecto-sp9_F_contig889:13814..139481692278959.4470983-CDS-Ecto-sp9_F_contig889:13814..13948Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 13815..13948 -
1622930942.413895-CDS-Ecto-sp9_F_contig889:14806..152701622930942.413895-CDS-Ecto-sp9_F_contig889:14806..15270Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 14807..15270 -
1692278959.4564412-CDS-Ecto-sp9_F_contig889:14806..152701692278959.4564412-CDS-Ecto-sp9_F_contig889:14806..15270Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 14807..15270 -
1622930942.432875-CDS-Ecto-sp9_F_contig889:15949..161351622930942.432875-CDS-Ecto-sp9_F_contig889:15949..16135Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 15950..16135 -
1692278959.46666-CDS-Ecto-sp9_F_contig889:15949..161351692278959.46666-CDS-Ecto-sp9_F_contig889:15949..16135Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 15950..16135 -
1622930942.4455736-CDS-Ecto-sp9_F_contig889:17123..173051622930942.4455736-CDS-Ecto-sp9_F_contig889:17123..17305Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 17124..17305 -
1692278959.4771013-CDS-Ecto-sp9_F_contig889:17123..173051692278959.4771013-CDS-Ecto-sp9_F_contig889:17123..17305Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 17124..17305 -
1622930942.4642937-CDS-Ecto-sp9_F_contig889:17722..177881622930942.4642937-CDS-Ecto-sp9_F_contig889:17722..17788Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 17723..17788 -
1692278959.4872057-CDS-Ecto-sp9_F_contig889:17722..177881692278959.4872057-CDS-Ecto-sp9_F_contig889:17722..17788Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 17723..17788 -
1622930942.4802923-CDS-Ecto-sp9_F_contig889:18730..196151622930942.4802923-CDS-Ecto-sp9_F_contig889:18730..19615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 18731..19615 -
1692278959.5012574-CDS-Ecto-sp9_F_contig889:18730..196151692278959.5012574-CDS-Ecto-sp9_F_contig889:18730..19615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig889 18731..19615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig889.17066.1

>prot_Ecto-sp9_F_contig889.17066.1 ID=prot_Ecto-sp9_F_contig889.17066.1|Name=mRNA_Ecto-sp9_F_contig889.17066.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=671bp
MASSKPKKGFSMSLGKPKQASSSATSAKGLDRATSGGSKSSTSAIGVAHD
DEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANGSNAA
AAATGSVPPPAATAAERPPTAEDPAGEKSLDQLAAEAIAKESVRGDGSSA
DAFGLGLDSDRVIGMIGKNPAAGEGDSSNGGATATTTPPAAGSKRKTGLL
EQNMIPGLMEVDGEDAKFRHDLGHRAEDLSARSKAYVDVPVAEFGAALLR
GMGWKGPEGDGGGGGGGGGGPDLSKDIEPRHHRLGLGAQPKPPEEMKRPR
KKKPGEKLRSSDAERLKIWEKKVQEERLRASRPSAAAQLAVMDVVELSEG
GGEGGRRRPRAMVLKTQGVPGLNKISVRMEDTGEKVLVDKATATRVSEDE
LARRPFSENKDRSSRSSSGGGKRGRSQSRSRSRSSGSVEREDVRRERRDK
KDKKKHKKSGGSSSSSKRERSSDGRRSSPSPRRRRSDEEIDRHRLRDGRR
DDDDGERGRRDDIPAKKSRGDDGDSDRGRYSNGNAGNGGQQSGPPAWLRA
NIRVRVIHKSYGGGRAYLGKGRVVDVPRVGQATVRMDLGELVLEGVKERH
LETVLPSRGGKVIVVRGAEKGATGKLLAKNKEKETALVQVYEDLRAVTLS
LDDVAEFTGMLDEDMEDVGY*
back to top

mRNA from alignment at Ecto-sp9_F_contig889:12547..19615-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig889.17066.1 ID=mRNA_Ecto-sp9_F_contig889.17066.1|Name=mRNA_Ecto-sp9_F_contig889.17066.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=7069bp|location=Sequence derived from alignment at Ecto-sp9_F_contig889:12547..19615- (Ectocarpus species9 EcSCA_722f female)
ATGGCGAGCTCTAAGCCCAAGAAGGGTTTCTCCATGTCCTTGGGCAAGCC TAAGCAAGCCTCCTCCTCTGCTACGTCGGCCAAGGGACTAGATCGCGCCA CCAGCGGCGGCAGCAAGTCTTCCACTTCGGCGATAGGCGTAGCCCACGAT GACGAGGACGCAGGGGGGAGGGGAGGCAAGCGGGACTACGTGACCGGAAT CGGCGGGGGCAAGGTCGTCACGAAAGAGGTCGTCGTGGACAGAGGCCCCC GCGTTATCGCCCTTGCTTCCAACCCCTGGGCTAACGGCAGCAACGCCGCT GCTGCCGCTACCGGGTCTGTTCCTCCGCCCGCAGCAACGGCAGCCGAACG CCCACCCACGGCAGAAGATCCGGCAGGCGAGAAATCTCTCGATCAGCTAG CGGCTGAAGCCATCGCCAAGGAATCCGTCCGCGGCGACGGCTCTAGCGCC GACGCCTTTGGGCTGGGCCTCGACTCCGACAGAGTAATCGGCATGATCGG CAAGAACCCTGCCGCCGGCGAAGGCGACAGCAGTAACGGCGGTGCAACGG CGACGACAACACCCCCCGCCGCCGGCAGCAAAAGGAAAACTGGCCTGCTG GAGCAGAACATGATCCCCGGGCTGATGGAGGTAGACGGGGAGGACGCCAA GTTTAGGCACGACCTAGGGCATCGCGCGGAGGACCTCAGCGCTCGCAGCA AGGCCTACGTCGACGTTCCGGTCGCAGAGTTCGGCGCGGCGCTGCTCCGG GGGATGGGGTGGAAGGGGCCAGAAGGAGACGGCGGCGGCGGCGGAGGCGG CGGAGGCGGGCCGGATCTGTCCAAGGATATTGAGCCCAGGCATCACAGGC TCGGGTTGGGGGCGCAGCCGAAGCCCCCAGAGGAGGTGAGGGGAGAGGCG AGGCAAGAGACGGATCGCCGACGTGTTGTTTGCCATGGGCTAGTCTTGTG TCGGCGTCGTCGTCGCTGCTGGTATGGCGGTGAAGGAACGTCGTGTTCGT CATGTTGAATTGCTGTGGTGCAGCTGTTGTGGTTTGTACGAATGCCGTGT GTGCATCAAGATGTGCATGAACGTCGCAGGAGGGTGGGCTAAGTATTTTT GCCGCGTCTCCCCTGCCGGAAGAGGGAAGAGCAACGAACGGGTTTGGCAC AGAAATGAGAACTCTAGTTTTAGTGGCGATTGGGGGATAGGGGGGCTCGG GGGGTGTCTGCGGCATGTCTCGTCTTTGTTTTCGAGCCACCGCTTCCTTC AGGATTTCCAGTAGCCGACGGGTTGGTGTCTTGCGAGAGACGGCATCGCA GTGCATGCCGCTTGTTGCCCGGGCTCTTCTCTTGCCGCTGTTTCACAAGT GATGTGACTGTCTACTAATTGACACAATGTTCCGTCAGCCTTGTATTTGC ACACGAGTTAAGACCTGATCGTTGTTTGGTGTACCGGAGCTGTCTTCGTC GGTACCACACCTGGTACACCAGCGTTGGCCGTAGTACACCTTCGTGAGTG CTGACGTGCGTGTTTGCTACGCTTGTGGTGACGAAGTTGTGGGCCTGTTC GTCTGGTTCTGGATTCGTTGCTGCTTTGGCTAAAACTCTACAAACCCTTT CAGCGCACATCGCGGCGCTAGTGGCCTGTCGGAACACCCACTACAGTAGC CTCGACATCTTTGTCGCGCGGGAGCACCCCCCCCCCCTGACCCTTGTCCC ACCGCCGGTTCCCCGATACAATCAATCCGGTCACCTTAGTTACCGTTCCA CGTTTGTGTCAGTTGCACGGCATCGTTGCTTACTTTTCTTTCCATCTGCT GCGCGCCTCCGCGAATCTAATCCACAGATGAAACGGCCGCGGAAAAAGAA GCCTGGAGAGAAGCTGAGGTCATCGGACGCCGAACGCCTTAAGGTGTGAC GTCATTTCTTGGTTGCATCGAGGTTGGAGGGACGCTCTTGGCCCGTTTCA GCCAGCAGACCATAAACCTTTGGATCGGTTGACGCTAAACCAGTATCGCT TAAAAAAGGGCTACGTTTGTGTCAACTGCATTGTTGGTGTGACGTCGTGC GTACTTACCATGGTCACGAACATACGACATCCAATGTGGTTTCGCGCTCC ATCCGTTGTTCAAGAATGAGTGCCGAGAACAACGTTCTCCTGGGAGTTGG TCCCACCCCCAAAAATGTTGTGTTCACCCTCTGCCACTCTCGGGGGGCAG ACAAGCAGCGTTGAGGGTCGTTCGCCCCCCCCCCCCGGTACTCTCTGTCC CTGCGAATCGGCGGTGACCCCGCCCATCATCGTCTCTCCCTGCGCTACAC ACCCAATCAGATTTGGGAGAAAAAGGTTCAGGAGGAGCGCTTGCGGGCAT CACGGCCAAGTGCGGCTGCGCAGCTAGCCGTCATGGACGTAGTGGAGTTG TCGGAAGGAGGGGGAGAGGGGGGCAGGCGCCGGCCTCGAGCGATGGTGCT CAAGACGCAGGGGGTGCCCGGGCTGAACAAGATATCCGTGAGGTATGCCA ATCTGGTGGCTGAAGCGAACGGGGTGCTTGACCATACACGAGCGGATTTG CCGGGAGCGACGAAGTTTGAAGGTCCCAACAATGTCAACGAGGGTTAGCA CCGACCACGTTTCGCGACTAACATCGGCGTGCATTTGGCTGTACTTTTTT CATGTAACACATCGGTTGAAAATGTTTGTAGTTTCTTCACATGCAACATG GGTTTGGCATGCTTCGTGGATTGGACCTATCATTCCGATTGTTTGTTCAC TTTCGTGGATGGTGAGTTACGCTACTGTATCATATTTTTATTACACCCAT CTGGTGTATTTTTTTCTTGCGTGTTTTCTTTCCAAACGTAGCATTGCTTG CTCCATGTCTTGGTGTTTGAGTTCCCTCTGTCAATCTATTCGTTCTGCAT TTGTACCGAAACCTTGATTGTCGAGATTCACTTGGTTTGTGGCTGTGGTC ACGTGTGTACTAGTAGTGCAAAGCAAGGATTTGGCGTTGTATTTTCAGCA GAAATATCAATACTTTTCAAGAAGGCGCGCCGTGGCCCGAGTACAAGTTC GTACCAAACAGGGGTGCATGGCAGAACCAGACGACCACGCCGCCCCTACT CCTCCGCTGTTGCTCTTCACCATGAGAGCCTCAGCGGTACCGCCGTAACT CTACGATACCCTACCCGATACTTGATAATTCAAGGACACCAACAAGAACG AACCTGTTGCTACTGCTGTGTGGCCGACCACCGTCCAGTATAGCTCAAGA CACCTATCACGACAACCCCCCCCTCCAACTTGCTCTGCGGGCCCCCACGT ATCTAGGCGCTCTCTCTCTCTCTCTCATCTATGTTTTTGTTCAGGATGGA AGACCCGGCCGACCCCCCCCTTCCTCTTTCTCTGACGGCCCCCGCGTATC TTGGTACGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTGGTATTTCGTTTTTGTTCAGGATGGAAGATACGGGCGAGA AGGTTCTCGTGGACAAGGCGACCGCGACGCGCGTTTCCGAGGACGAGTTG GCGCGAAGGCCGTTCTCCGAAAACAAGGACCGTTCTTCCCGCAGCAGCAG TGGCGGCGGGAAGAGGGGCCGGAGTCAGAGTCGGAGCCGTAGCCGAAGCA GCGGTAGCGTCGAGAGGTGGGTGGACTGCGCGTCGGAACACTCTGCTCGC GAAACATCCTCTCGAGGCTTTCGTGATCGGTTTCGGATAATGATTCCTTT TTTTCCTCCATCTATGTTCTTCATGTTCCAGCAGTATTTTTACGTCAGCT TTTCTCCTCGGATAGTATGGAATCGAACGGTGGCATCGACTCCCACGGTC GTTGTGGCCACTTCTCCCTTACTCCTAGCTGCAGGGTTTACATCCGGCAG GGGTGTGCACCAATGGTTGAGTTGCGTAGTCCGGTTCGACCGGAAGGATT GAAGCGCAAGGGTCGTTTTTAGCGATCGCTCTAAAAGAGAAGGCTGGAAG TGCTGAGCAATGCTTGATGTACACGAGCCTAAACTGGAGCTTGTTTGATA GAGGGTGGTACTGCATGCTTGGAACCGAAATTATCTGCGAGTAAAAGCGC CTCGTTGAGAACTCGGTTGATTCAGCGAGGCGCACAAGCACATGCTCCGA GTTAATCGACACACACGTGTCTGCCTGGGGGTTTACTCATAGTCGTGCAT GCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGCGGGCAC GGAGGTGTTGATTCGCTCACCTACGTTCGCGCTTCGTAGAAAAACTTGGA AACCCCGTTACCTTGTACATTCCCACGTGCGGCGTGTGGCTGCAGGGAAG ACGTCCGTCGAGAGCGAAGAGACAAAAAGGACAAGAAGAAGCACAAGAAA AGCGGGGGCAGCAGCAGCAGCAGCAAGCGAGAGCGGAGCAGCGACGGCCG GAGATCCTCCCCGTCACCCCGCCGCCGCCGCTCCGACGAGGAAATCGACC GACACCGCCTACGCGACGGCCGGAGAGACGACGATGACGGGGAGAGGGGA CGCCGGGATGACATCCCGGCTAAGAAAAGCCGCGGCGATGATGGGGACAG TGACAGAGGCCGATACAGCAACGGTAACGCCGGCAATGGCGGTCAGCAGT CCGGGCCGCCGGCCTGGCTGCGAGCCAACATTCGGGTGCGAGTCATCCAC AAGTCGTACGGCGGAGGGCGGGCGTATCTGGGGAAGGGGAGGGTGGTGGA TGTGCCGCGTGTCGGGCAGGCGACCGTTCGAATGGACCTCGGCGAGCTTG TTCTCGAAGGTTAAGCATACAATAGCAGACCTTGTTCGGCATGTTTTTGT ATGTGAAACGTTTCTAACTTTTGTTTTTAGCTCAACTCTCAAGTCTCTTT CGCTTTCGCCGACAACCTGTATCGTGTCTTACCTAAACAGTACATTTGTA CACGCAAAAGGGTAAGTTTTTGGAAGTTGATGTCTGTACGACATGGGAGT GTTACCAACACCGAAGGATGATGGGTCTCGGGAGAAGCTGTCAACACTCC CTCCGAGCGCGGCCCTTTTCGGCATGAGCACATTTCCTGCTGCAGGTATA TCTTGTCCCGAAACACGCGTCTGTTGCTTTTGCGACCTATGGTCGGCACG CTGTCTTGTACCAGTATACTGGTATATGGCACGGGTTTACAGCGGCAGCA ACGACGACGCGGTTGGTTTTGTTTTTAATCCGTGCGACAAGCGTCGCAAG TAGTGCTGGCACGATGTTGCGCACTCGGTGGAGTGCAATGGACTGGCGCG TTCGACCATTTCGCCGAGGGCATGTTGCCGCGTCTTCCACAGTCTCTACA ACTGATCCATCCCGAGTGGGCTCATGAGAGCATACATACAGTGTCATGTG ATGTAAGATGAAAACTGCTGCGGGACCTACCCACAGCTGATTGTCAGCTG CCTTGTGACGTTTCCCCAAACCTCAATAGGTGACGTTTTTGACCCGAACA GCCCAGCGAACCTCAGCGCGCCAAGAGTAATTTTTCACAAATCTTTAACA TTCTTCATCCTGTTGCACTCTGCCCTAACTTGCCCACTTTCTCTTTCTCT GCTGCCCGCTGCCTTGATATGTTCGATGGCCACGGGGGACTGGTACATTC CAACGTGCACGCAACAGGCGTGAAGGAGAGGCACCTAGAGACTGTGCTGC CCTCTAGAGGCGGCAAGGTTATCGTCGTCCGCGGTGCGGAGAAGGGGGCC ACGGGGAAGCTGCTCGCCAAGAACAAGGAGAAGGAGACGGCCCTCGTGCA GGTAAGGCGGGTGGGTCCCCTGTCCCCCCCGGTGGTGGCTTGTGTTGCCC GTGCAGGGCTTGGGTGAATGGAGCCTGATGGACATCTGCCCACTGGTTGT TGAAGATTTTTGTTTTTCTCCTGTGGGGACATGATTGTTACCTACGGAAT TCCTGTACAGAATAAAGCTGAACGTTGCGGATGAACTCGGAGGGACGGCT GTTGGAATTAGGCTTGGCGTTGCAAGCGAAGGATTTGCCTTTTTCTGCCG GTGGAATCGGAATGAATGGCTGCTTGCTTGATTTCCTCCGGCTTTGTGCC TAGTTTAGCCTTTCAAGTGTACGGGGGCAGGCCGGTACAGCTAGCTGTGG CAACCTTGGACGGTGGGGCCAGAAGTACCGTTGAAATTCCTACTTCAAAG GCGTTGGACTACCTTGTGGGCGGGCCGTTTGGTGCGCGCTGTTCCGTGCT CTTTATTCGCAGAACGTCAACACTACTCTGTTGTGCTTTTGATTGCAAGT CGTCTCTTGCCTCGCATCTGTCAATACCCATTTTCCAAGCAGGTGTCTAC GCACATTCGAAGGCCGAGATTTTCTTCTCACATGCATATACGCGAACGAT ACACACTTCAAATTGACATTTCGATATCTGCTCGCGGCGTGCGGGCAGCG ACTGATCGACCTCGGCCGCCATATGCTTATGCATGCACTCGTGTTTTGCT GCTCTCGGGGCACATGCCGATTTTGTTCGGTGCTCGCCAGGTCTACGAAG ATCTGCGCGCGGTAACACTATCACTCGACGACGTCGCCGAGTTCACCGGC ATGCTCGACGAAGACATGGAAGACGTCGGTTACTGAGCCAACCTTTGCCA CAGAATTCAGGCACCGGATGGATCTGGAGAGGTTGACAGGCTGTCCTCTT CTGTGTTGGTTCCGGCATTTTTGAACAATTGAGATCCCGTGGGTTAACTG GTAGCCGTAGCCGGCTCTTGACTCGTTGGGTCACGCTGTCTCTGTCTCGC TTCTGAGAGTTCGGCTGTCGAGGAATAGGAGCGCAGAATGAAAGGTTCAA CATGTGGTGGCGCCTAGCATCGGGCGGTTTCCCCTGGGCGTTGGCCCATT GCGTGCCTGCCACATCCTGACTTTTTCCATGTTTGTCCGCGGGGTGGCTG GGCTTCCTGCGCCAGAGTTGAGGAAAACTTGACGTTTGTCTTGTCGTCGG CACATGCCTTCACCATCCGGACCACGAAAAGGTGTACAGGTTTGTTTGCG AAAACATTGCAGATCGACC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig889:12547..19615-

>mRNA_Ecto-sp9_F_contig889.17066.1 ID=mRNA_Ecto-sp9_F_contig889.17066.1|Name=mRNA_Ecto-sp9_F_contig889.17066.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4026bp|location=Sequence derived from alignment at Ecto-sp9_F_contig889:12547..19615- (Ectocarpus species9 EcSCA_722f female)
ATGGCGAGCTCTAAGCCCAAGAAGGGTTTCTCCATGTCCTTGGGCAAGCC
TAAGCAAGCCTCCTCCTCTGCTACGTCGGCCAAGGGACTAGATCGCGCCA
CCAGCGGCGGCAGCAAGTCTTCCACTTCGGCGATAGGCGTAGCCCACGAT
GACGAGGACGCAGGGGGGAGGGGAGGCAAGCGGGACTACGTGACCGGAAT
CGGCGGGGGCAAGGTCGTCACGAAAGAGGTCGTCGTGGACAGAGGCCCCC
GCGTTATCGCCCTTGCTTCCAACCCCTGGGCTAACGGCAGCAACGCCGCT
GCTGCCGCTACCGGGTCTGTTCCTCCGCCCGCAGCAACGGCAGCCGAACG
CCCACCCACGGCAGAAGATCCGGCAGGCGAGAAATCTCTCGATCAGCTAG
CGGCTGAAGCCATCGCCAAGGAATCCGTCCGCGGCGACGGCTCTAGCGCC
GACGCCTTTGGGCTGGGCCTCGACTCCGACAGAGTAATCGGCATGATCGG
CAAGAACCCTGCCGCCGGCGAAGGCGACAGCAGTAACGGCGGTGCAACGG
CGACGACAACACCCCCCGCCGCCGGCAGCAAAAGGAAAACTGGCCTGCTG
GAGCAGAACATGATCCCCGGGCTGATGGAGGTAGACGGGGAGGACGCCAA
GTTTAGGCACGACCTAGGGCATCGCGCGGAGGACCTCAGCGCTCGCAGCA
AGGCCTACGTCGACGTTCCGGTCGCAGAGTTCGGCGCGGCGCTGCTCCGG
GGGATGGGGTGGAAGGGGCCAGAAGGAGACGGCGGCGGCGGCGGAGGCGG
CGGAGGCGGGCCGGATCTGTCCAAGGATATTGAGCCCAGGCATCACAGGC
TCGGGTTGGGGGCGCAGCCGAAGCCCCCAGAGGAGATGGCGAGCTCTAAG
CCCAAGAAGGGTTTCTCCATGTCCTTGGGCAAGCCTAAGCAAGCCTCCTC
CTCTGCTACGTCGGCCAAGGGACTAGATCGCGCCACCAGCGGCGGCAGCA
AGTCTTCCACTTCGGCGATAGGCGTAGCCCACGATGACGAGGACGCAGGG
GGGAGGGGAGGCAAGCGGGACTACGTGACCGGAATCGGCGGGGGCAAGGT
CGTCACGAAAGAGGTCGTCGTGGACAGAGGCCCCCGCGTTATCGCCCTTG
CTTCCAACCCCTGGGCTAACGGCAGCAACGCCGCTGCTGCCGCTACCGGG
TCTGTTCCTCCGCCCGCAGCAACGGCAGCCGAACGCCCACCCACGGCAGA
AGATCCGGCAGGCGAGAAATCTCTCGATCAGCTAGCGGCTGAAGCCATCG
CCAAGGAATCCGTCCGCGGCGACGGCTCTAGCGCCGACGCCTTTGGGCTG
GGCCTCGACTCCGACAGAGTAATCGGCATGATCGGCAAGAACCCTGCCGC
CGGCGAAGGCGACAGCAGTAACGGCGGTGCAACGGCGACGACAACACCCC
CCGCCGCCGGCAGCAAAAGGAAAACTGGCCTGCTGGAGCAGAACATGATC
CCCGGGCTGATGGAGGTAGACGGGGAGGACGCCAAGTTTAGGCACGACCT
AGGGCATCGCGCGGAGGACCTCAGCGCTCGCAGCAAGGCCTACGTCGACG
TTCCGGTCGCAGAGTTCGGCGCGGCGCTGCTCCGGGGGATGGGGTGGAAG
GGGCCAGAAGGAGACGGCGGCGGCGGCGGAGGCGGCGGAGGCGGGCCGGA
TCTGTCCAAGGATATTGAGCCCAGGCATCACAGGCTCGGGTTGGGGGCGC
AGCCGAAGCCCCCAGAGGAGATGAAACGGCCGCGGAAAAAGAAGCCTGGA
GAGAAGCTGAGGTCATCGGACGCCGAACGCCTTAAGATGAAACGGCCGCG
GAAAAAGAAGCCTGGAGAGAAGCTGAGGTCATCGGACGCCGAACGCCTTA
AGATTTGGGAGAAAAAGGTTCAGGAGGAGCGCTTGCGGGCATCACGGCCA
AGTGCGGCTGCGCAGCTAGCCGTCATGGACGTAGTGGAGTTGTCGGAAGG
AGGGGGAGAGGGGGGCAGGCGCCGGCCTCGAGCGATGGTGCTCAAGACGC
AGGGGGTGCCCGGGCTGAACAAGATATCCGTGAGATTTGGGAGAAAAAGG
TTCAGGAGGAGCGCTTGCGGGCATCACGGCCAAGTGCGGCTGCGCAGCTA
GCCGTCATGGACGTAGTGGAGTTGTCGGAAGGAGGGGGAGAGGGGGGCAG
GCGCCGGCCTCGAGCGATGGTGCTCAAGACGCAGGGGGTGCCCGGGCTGA
ACAAGATATCCGTGAGGATGGAAGATACGGGCGAGAAGGTTCTCGTGGAC
AAGGCGACCGCGACGCGCGTTTCCGAGGACGAGTTGGCGCGAAGGCCGTT
CTCCGAAAACAAGGACCGTTCTTCCCGCAGCAGCAGTGGCGGCGGGAAGA
GGGGCCGGAGTCAGAGTCGGAGCCGTAGCCGAAGCAGCGGTAGCGTCGAG
AGGATGGAAGATACGGGCGAGAAGGTTCTCGTGGACAAGGCGACCGCGAC
GCGCGTTTCCGAGGACGAGTTGGCGCGAAGGCCGTTCTCCGAAAACAAGG
ACCGTTCTTCCCGCAGCAGCAGTGGCGGCGGGAAGAGGGGCCGGAGTCAG
AGTCGGAGCCGTAGCCGAAGCAGCGGTAGCGTCGAGAGGGAAGACGTCCG
TCGAGAGCGAAGAGACAAAAAGGACAAGAAGAAGCACAAGAAAAGCGGGG
GCAGCAGCAGCAGCAGCAAGCGAGAGCGGAGCAGCGACGGCCGGAGATCC
TCCCCGTCACCCCGCCGCCGCCGCTCCGACGAGGAAATCGACCGACACCG
CCTACGCGACGGCCGGAGAGACGACGATGACGGGGAGAGGGGACGCCGGG
ATGACATCCCGGCTAAGAAAAGCCGCGGCGATGATGGGGACAGTGACAGA
GGCCGATACAGCAACGGTAACGCCGGCAATGGCGGTCAGCAGTCCGGGCC
GCCGGCCTGGCTGCGAGCCAACATTCGGGTGCGAGTCATCCACAAGTCGT
ACGGCGGAGGGCGGGCGTATCTGGGGAAGGGGAGGGTGGTGGATGTGCCG
CGTGTCGGGCAGGCGACCGTTCGAATGGACCTCGGCGAGCTTGTTCTCGA
AGGGAAGACGTCCGTCGAGAGCGAAGAGACAAAAAGGACAAGAAGAAGCA
CAAGAAAAGCGGGGGCAGCAGCAGCAGCAGCAAGCGAGAGCGGAGCAGCG
ACGGCCGGAGATCCTCCCCGTCACCCCGCCGCCGCCGCTCCGACGAGGAA
ATCGACCGACACCGCCTACGCGACGGCCGGAGAGACGACGATGACGGGGA
GAGGGGACGCCGGGATGACATCCCGGCTAAGAAAAGCCGCGGCGATGATG
GGGACAGTGACAGAGGCCGATACAGCAACGGTAACGCCGGCAATGGCGGT
CAGCAGTCCGGGCCGCCGGCCTGGCTGCGAGCCAACATTCGGGTGCGAGT
CATCCACAAGTCGTACGGCGGAGGGCGGGCGTATCTGGGGAAGGGGAGGG
TGGTGGATGTGCCGCGTGTCGGGCAGGCGACCGTTCGAATGGACCTCGGC
GAGCTTGTTCTCGAAGGCGTGAAGGAGAGGCACCTAGAGACTGTGCTGCC
CTCTAGAGGCGGCAAGGTTATCGTCGTCCGCGGTGCGGAGAAGGGGGCCA
CGGGGAAGCTGCTCGCCAAGAACAAGGAGAAGGAGACGGCCCTCGTGCAG
GCGTGAAGGAGAGGCACCTAGAGACTGTGCTGCCCTCTAGAGGCGGCAAG
GTTATCGTCGTCCGCGGTGCGGAGAAGGGGGCCACGGGGAAGCTGCTCGC
CAAGAACAAGGAGAAGGAGACGGCCCTCGTGCAGGTCTACGAAGATCTGC
GCGCGGTAACACTATCACTCGACGACGTCGCCGAGTTCACCGGCATGCTC
GACGAAGACATGGAAGACGTCGGTTACTGAGTCTACGAAGATCTGCGCGC
GGTAACACTATCACTCGACGACGTCGCCGAGTTCACCGGCATGCTCGACG
AAGACATGGAAGACGTCGGTTACTGA
back to top