mRNA_Ecto-sp9_F_contig888.17054.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig888.17054.1
Unique NamemRNA_Ecto-sp9_F_contig888.17054.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig888.17054.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig888contigEcto-sp9_F_contig888:24415..24837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.8694198-CDS-Ecto-sp9_F_contig888:24414..245361622930940.8694198-CDS-Ecto-sp9_F_contig888:24414..24536Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig888 24415..24536 +
1692278958.7141116-CDS-Ecto-sp9_F_contig888:24414..245361692278958.7141116-CDS-Ecto-sp9_F_contig888:24414..24536Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig888 24415..24536 +
1622930940.8817859-CDS-Ecto-sp9_F_contig888:24692..248371622930940.8817859-CDS-Ecto-sp9_F_contig888:24692..24837Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig888 24693..24837 +
1692278958.7255378-CDS-Ecto-sp9_F_contig888:24692..248371692278958.7255378-CDS-Ecto-sp9_F_contig888:24692..24837Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig888 24693..24837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig888.17054.1prot_Ecto-sp9_F_contig888.17054.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig888 24415..24837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig888.17054.1

>prot_Ecto-sp9_F_contig888.17054.1 ID=prot_Ecto-sp9_F_contig888.17054.1|Name=mRNA_Ecto-sp9_F_contig888.17054.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=89bp
VQILPNHGWIEEPQSSSNAAFPRTLHKSKELKVAYRGVGPLPPRSRDCHA
TVGREPGRQAAGSREQRRTVAGSQSSEERKENGLSANR*
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mRNA from alignment at Ecto-sp9_F_contig888:24415..24837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig888.17054.1 ID=mRNA_Ecto-sp9_F_contig888.17054.1|Name=mRNA_Ecto-sp9_F_contig888.17054.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=423bp|location=Sequence derived from alignment at Ecto-sp9_F_contig888:24415..24837+ (Ectocarpus species9 EcSCA_722f female)
GTCCAAATTCTACCAAATCACGGATGGATCGAAGAACCACAAAGCAGCAG
CAATGCAGCTTTCCCACGTACTCTTCACAAAAGTAAGGAGCTCAAGGTTG
CATACAGAGGTGTTGGACCCTTGTAGCCCCCATGTGTGCACCCCGCAAAC
CTCGTGATGCTGCTGCTGTCCGCCCGTTTTTTTTTTGCGAGAGGGAAAAA
CCGGGGACACGAGAGCCGTCAACCCCGCCCTTCCTTGCCGTTACCCCGCT
TGTTGGTTTGTGTGTGCTGGACTGTCAGGCCGCCCCGTTCGAGGGACTGT
CACGCGACCGTGGGAAGAGAGCCGGGGAGGCAGGCAGCAGGCAGCAGGGA
ACAGCGTCGAACGGTGGCTGGATCTCAGAGCTCGGAAGAACGCAAGGAAA
ACGGCTTGAGCGCGAACAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig888:24415..24837+

>mRNA_Ecto-sp9_F_contig888.17054.1 ID=mRNA_Ecto-sp9_F_contig888.17054.1|Name=mRNA_Ecto-sp9_F_contig888.17054.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp9_F_contig888:24415..24837+ (Ectocarpus species9 EcSCA_722f female)
GTCCAAATTCTACCAAATCACGGATGGATCGAAGAACCACAAAGCAGCAG
CAATGCAGCTTTCCCACGTACTCTTCACAAAAGTAAGGAGCTCAAGGTTG
CATACAGAGGTGTTGGACCCTTGTCCAAATTCTACCAAATCACGGATGGA
TCGAAGAACCACAAAGCAGCAGCAATGCAGCTTTCCCACGTACTCTTCAC
AAAAGTAAGGAGCTCAAGGTTGCATACAGAGGTGTTGGACCCTTGCCGCC
CCGTTCGAGGGACTGTCACGCGACCGTGGGAAGAGAGCCGGGGAGGCAGG
CAGCAGGCAGCAGGGAACAGCGTCGAACGGTGGCTGGATCTCAGAGCTCG
GAAGAACGCAAGGAAAACGGCTTGAGCGCGAACAGGTAAGCCGCCCCGTT
CGAGGGACTGTCACGCGACCGTGGGAAGAGAGCCGGGGAGGCAGGCAGCA
GGCAGCAGGGAACAGCGTCGAACGGTGGCTGGATCTCAGAGCTCGGAAGA
ACGCAAGGAAAACGGCTTGAGCGCGAACAGGTAA
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