mRNA_Ecto-sp9_F_contig8873.17050.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8873.17050.1
Unique NamemRNA_Ecto-sp9_F_contig8873.17050.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8873.17050.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8873contigEcto-sp9_F_contig8873:936..1515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.6403012-CDS-Ecto-sp9_F_contig8873:935..15141622930940.6403012-CDS-Ecto-sp9_F_contig8873:935..1514Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8873 936..1514 +
1692278958.64174-CDS-Ecto-sp9_F_contig8873:935..15141692278958.64174-CDS-Ecto-sp9_F_contig8873:935..1514Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8873 936..1514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8873.17050.1prot_Ecto-sp9_F_contig8873.17050.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8873 936..1514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8873.17050.1

>prot_Ecto-sp9_F_contig8873.17050.1 ID=prot_Ecto-sp9_F_contig8873.17050.1|Name=mRNA_Ecto-sp9_F_contig8873.17050.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=193bp
PIRFRRQQQTAAATTTTTNNAPKELHTYMRSMQHVQQSRPSPPTKFSLRY
LSMNRLRSVQPSPQEHYIIQKRSKAQPVRSSGCGHVSFKWSEHWPTACFL
MGAQRPHRWADTPKLSAARPLPALINNHPARVYVCGTGEWCNKNPKRKHC
QDVRICYRFLGSWSTNHHIKKSELSRHDGTHTTCTRELCLHPS
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mRNA from alignment at Ecto-sp9_F_contig8873:936..1515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8873.17050.1 ID=mRNA_Ecto-sp9_F_contig8873.17050.1|Name=mRNA_Ecto-sp9_F_contig8873.17050.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=580bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8873:936..1515+ (Ectocarpus species9 EcSCA_722f female)
CCAATCCGATTTCGGCGACAACAACAAACAGCAGCAGCAACAACAACAAC
AACAAACAACGCTCCAAAAGAGCTCCACACATACATGAGGAGCATGCAAC
ATGTCCAACAAAGTCGGCCGTCTCCGCCTACTAAATTCTCACTGCGCTAT
CTATCGATGAACCGCCTCCGGTCTGTGCAACCTAGCCCCCAAGAGCACTA
TATTATACAAAAACGCTCAAAGGCGCAACCAGTAAGAAGCAGTGGCTGTG
GTCATGTCTCATTCAAATGGTCGGAACATTGGCCGACTGCTTGCTTCTTG
ATGGGAGCCCAGCGGCCCCACCGCTGGGCCGACACCCCCAAACTCTCAGC
CGCGCGCCCCCTTCCTGCATTGATCAATAACCACCCGGCACGTGTATATG
TATGTGGTACGGGTGAATGGTGCAACAAAAATCCAAAGAGAAAACACTGC
CAGGACGTAAGGATATGCTACAGATTCTTGGGGTCCTGGTCGACAAACCA
CCACATAAAAAAATCAGAACTTTCAAGACACGATGGCACACACACCACCT
GCACTCGGGAGTTATGCCTGCACCCCTCCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8873:936..1515+

>mRNA_Ecto-sp9_F_contig8873.17050.1 ID=mRNA_Ecto-sp9_F_contig8873.17050.1|Name=mRNA_Ecto-sp9_F_contig8873.17050.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8873:936..1515+ (Ectocarpus species9 EcSCA_722f female)
CCAATCCGATTTCGGCGACAACAACAAACAGCAGCAGCAACAACAACAAC
AACAAACAACGCTCCAAAAGAGCTCCACACATACATGAGGAGCATGCAAC
ATGTCCAACAAAGTCGGCCGTCTCCGCCTACTAAATTCTCACTGCGCTAT
CTATCGATGAACCGCCTCCGGTCTGTGCAACCTAGCCCCCAAGAGCACTA
TATTATACAAAAACGCTCAAAGGCGCAACCAGTAAGAAGCAGTGGCTGTG
GTCATGTCTCATTCAAATGGTCGGAACATTGGCCGACTGCTTGCTTCTTG
ATGGGAGCCCAGCGGCCCCACCGCTGGGCCGACACCCCCAAACTCTCAGC
CGCGCGCCCCCTTCCTGCATTGATCAATAACCACCCGGCACGTGTATATG
TATGTGGTACGGGTGAATGGTGCAACAAAAATCCAAAGAGAAAACACTGC
CAGGACGTAAGGATATGCTACAGATTCTTGGGGTCCTGGTCGACAAACCA
CCACATAAAAAAATCAGAACTTTCAAGACACGATGGCACACACACCACCT
GCACTCGGGAGTTATGCCTGCACCCCTCCCCAATCCGATTTCGGCGACAA
CAACAAACAGCAGCAGCAACAACAACAACAACAAACAACGCTCCAAAAGA
GCTCCACACATACATGAGGAGCATGCAACATGTCCAACAAAGTCGGCCGT
CTCCGCCTACTAAATTCTCACTGCGCTATCTATCGATGAACCGCCTCCGG
TCTGTGCAACCTAGCCCCCAAGAGCACTATATTATACAAAAACGCTCAAA
GGCGCAACCAGTAAGAAGCAGTGGCTGTGGTCATGTCTCATTCAAATGGT
CGGAACATTGGCCGACTGCTTGCTTCTTGATGGGAGCCCAGCGGCCCCAC
CGCTGGGCCGACACCCCCAAACTCTCAGCCGCGCGCCCCCTTCCTGCATT
GATCAATAACCACCCGGCACGTGTATATGTATGTGGTACGGGTGAATGGT
GCAACAAAAATCCAAAGAGAAAACACTGCCAGGACGTAAGGATATGCTAC
AGATTCTTGGGGTCCTGGTCGACAAACCACCACATAAAAAAATCAGAACT
TTCAAGACACGATGGCACACACACCACCTGCACTCGGGAGTTATGCCTGC
ACCCCTCC
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