mRNA_Ecto-sp9_F_contig8862.17045.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT9_ECTSI) HSP 1 Score: 238 bits (608), Expect = 4.980e-75 Identity = 140/165 (84.85%), Postives = 143/165 (86.67%), Query Frame = 1
Query: 1 APVSPPTCPKAESAADENCDAGGSSDDSXXXXXSNLDLTSSDTVAYSSRMIAASRALESRRRDRLFDDPYAELLAGPDAMQTVEDREKAKAQEGSSAPPLEAAAAASA---SDGVPRNVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRLRASGD 486
APVSP AESAADENCDAG XXXX SNLDLTSSDTVAYSSRMIAA+RALESRRRDRLFDDPYAELLAGPDAMQTVED KAQE SS PPLEA AAA+A SDGVPR+VQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRLRASGD
Sbjct: 37 APVSPXXXXXAESAADENCDAGXXXXXXXXXXSSNLDLTSSDTVAYSSRMIAAARALESRRRDRLFDDPYAELLAGPDAMQTVED----KAQEESSLPPLEATAAATAAAASDGVPRDVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRLRASGD 197
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP3_ECTSI) HSP 1 Score: 146 bits (369), Expect = 4.040e-40 Identity = 79/92 (85.87%), Postives = 82/92 (89.13%), Query Frame = 1
Query: 220 LAGPDAMQTVEDREKAKAQEGSSAPPLEA---AAAASASDGVPRNVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRLRASGD 486
LAGPD +QTVEDREK KAQE SAPPLEA A AA+ASDGVPR+VQ RLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLR RASGD
Sbjct: 11 LAGPDPIQTVEDREKVKAQEELSAPPLEATTAATAAAASDGVPRDVQTRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRRRASGD 102
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT70_HETAK) HSP 1 Score: 81.3 bits (199), Expect = 4.340e-15 Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 118 SSDTVAYSSRMIAASRALESRRRDRLFDDPYAELLAGPDAMQTVEDREKAKAQEGSSAPPLEAAAAASASDGVPRNVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRL 471
S+D VA+SS+ +AA+RA+E++RRDRLF+D ++ LAG A++ + + K + G PR R ++IRT++ DDF E + GI+QIV +GAGMDTR RL
Sbjct: 55 SADPVAFSSQRMAAARAIENKRRDRLFEDKVSQYLAGQ-ALEVAKQKMKTE-------------------KGYPRT--RNISIRTKYFDDFLEHVSVEHGIEQIVLVGAGMDTRAFRL 150
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9TUH9_9CYAN) HSP 1 Score: 77.0 bits (188), Expect = 5.710e-14 Identity = 52/116 (44.83%), Postives = 63/116 (54.31%), Query Frame = 1
Query: 124 DTVAYSSRMIAASRALESRRRDRLFDDPYAELLAGPDAMQTVEDREKAKAQEGSSAPPLEAAAAASASDGVPRNVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRL 471
D V+ SS+ +AA RALE++R DRLFDDPYAE LAG + + V+ P L+ G + A+RTRF DDF A P I QIV LGAGMDTR RL
Sbjct: 6 DIVSRSSQFMAAVRALETKRPDRLFDDPYAERLAGAEIIAQVK-------------PILK---------GADERGRPFAAVRTRFFDDFLFSLASP--INQIVILGAGMDTRAFRL 97
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7V9S157_9ACTN) HSP 1 Score: 76.3 bits (186), Expect = 1.560e-13 Identity = 47/116 (40.52%), Postives = 59/116 (50.86%), Query Frame = 1
Query: 124 DTVAYSSRMIAASRALESRRRDRLFDDPYAELLAGPDAMQTVEDREKAKAQEGSSAPPLEAAAAASASDGVPRNVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRL 471
D +A +SR +AA+RA ES R DRLFDDP A LAGP+ +E E A +G P+ IRTRF DDF D G++Q+V AG+DTR RL
Sbjct: 6 DALAPTSRWMAAARARESERADRLFDDPLAAALAGPEGFAWLEQMEAAAGSDGPGLYPV---------------------IRTRFFDDFLLDSCRRLGVRQVVLAAAGLDTRAFRL 100
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Match: SAM-dependent (methyltransferase n=2 Tax=Streptomyces sp. TaxID=1931 RepID=UPI00184D101A) HSP 1 Score: 73.9 bits (180), Expect = 1.080e-12 Identity = 49/114 (42.98%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 130 VAYSSRMIAASRALESRRRDRLFDDPYAELLAGPDAMQTVEDREKAKAQEGSSAPPLEAAAAASASDGVPRNVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRL 471
VA ++R AA+RA ESRR DRLFDDP +ELLAG D Q ++ A+A + +G P L IRTR+ DDF G++QIV +GAG+DTR RL
Sbjct: 27 VAQTARWTAAARARESRRPDRLFDDPLSELLAGEDGEQLLKYFHTARASD----------------EGNPF-----LPIRTRWFDDFLARSTAD-GVRQIVGIGAGLDTRSFRL 118
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=Sinosporangium album TaxID=504805 RepID=A0A1G8A5R7_9ACTN) HSP 1 Score: 73.6 bits (179), Expect = 1.340e-12 Identity = 52/114 (45.61%), Postives = 61/114 (53.51%), Query Frame = 1
Query: 130 VAYSSRMIAASRALESRRRDRLFDDPYAELLAGPDAMQTVEDREKAKAQEGSSAPPLEAAAAASASDGVPRNVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRL 471
VA ++R AASRA ESRR DRLFDDP A LLAGP A + ++A A +G P L IRTR+ DDF AG G Q+V LGAG+DTR RL
Sbjct: 15 VAQTARWTAASRARESRRPDRLFDDPLAALLAGPHAAALLRHFHTSRA----------------ADEGNPF-----LPIRTRWFDDFLRAKAGKTG-HQVVGLGAGLDTRAHRL 106
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Match: SAM-dependent (methyltransferase n=2 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001689B4AA) HSP 1 Score: 73.6 bits (179), Expect = 1.440e-12 Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 106 LDLTSSDTVAYSSRMIAASRALESRRRDRLFDDPYAELLAGPDAMQT-VEDREKAKAQEGSSAPPLEAAAAASASDGVPRNVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLR 468
+ +SD ++Y++R++AA RA+E RLF+DPYA LLAG + V+ RE A+ Q+ PLE D + + R +AIRTRF DD QIV LGAG+DTR R
Sbjct: 1 MSSAASDPISYTARIVAAKRAIEQSHPGRLFEDPYAALLAGDEVENLLVKWREVARRQDR----PLE--------DVIVKRT-RYIAIRTRFFDDLLRSALSETDNSQIVILGAGLDTRAFR 109
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=uncultured Rubrobacteraceae bacterium TaxID=349277 RepID=A0A6J4QRY9_9ACTN) HSP 1 Score: 72.8 bits (177), Expect = 2.460e-12 Identity = 48/117 (41.03%), Postives = 58/117 (49.57%), Query Frame = 1
Query: 121 SDTVAYSSRMIAASRALESRRRDRLFDDPYAELLAGPDAMQTVEDREKAKAQEGSSAPPLEAAAAASASDGVPRNVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRL 471
S+ VA +SR +AA+RA ES R DRLFDDP A LAGP+ +E E A G P+ IRTRF DDF GI+Q+V AG+DTR RL
Sbjct: 7 SNPVAPTSRWMAAARARESERPDRLFDDPLAAALAGPEGFAWLERMEAAAQSSGPGLYPV---------------------IRTRFFDDFLLKACKESGIRQVVLAAAGLDTRAFRL 102
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=Cyanobacteria bacterium UBA11367 TaxID=2055774 RepID=A0A352XFW5_9CYAN) HSP 1 Score: 72.8 bits (177), Expect = 2.460e-12 Identity = 46/123 (37.40%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 103 NLDLTSSDTVAYSSRMIAASRALESRRRDRLFDDPYAELLAGPDAMQTVEDREKAKAQEGSSAPPLEAAAAASASDGVPRNVQRRLAIRTRFCDDFFEDCAGPRGIKQIVSLGAGMDTRGLRL 471
N T + V+ S++++AA RA E+ R DRLF DP+A LAG A++ ++RE + +V RLAIRTRF DDF D ++Q+V L AGMD R RL
Sbjct: 12 NQSFTIENFVSLSAQLVAAVRARETARNDRLFTDPFAAELAGKQALEMAKERE----------------------ERTKDSVADRLAIRTRFFDDFLIDAVSE--VRQVVILAAGMDARAFRL 110 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8862.17045.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8862.17045.1 >prot_Ecto-sp9_F_contig8862.17045.1 ID=prot_Ecto-sp9_F_contig8862.17045.1|Name=mRNA_Ecto-sp9_F_contig8862.17045.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=162bp APVSPPTCPKAESAADENCDAGGSSDDSNDSSSSNLDLTSSDTVAYSSRMback to top mRNA from alignment at Ecto-sp9_F_contig8862:190..2779- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8862.17045.1 ID=mRNA_Ecto-sp9_F_contig8862.17045.1|Name=mRNA_Ecto-sp9_F_contig8862.17045.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2590bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8862:190..2779- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8862:190..2779- >mRNA_Ecto-sp9_F_contig8862.17045.1 ID=mRNA_Ecto-sp9_F_contig8862.17045.1|Name=mRNA_Ecto-sp9_F_contig8862.17045.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8862:190..2779- (Ectocarpus species9 EcSCA_722f female)back to top |