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Homology
BLAST of mRNA_Ecto-sp9_F_contig886.17044.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLE5_ECTSI) HSP 1 Score: 360 bits (925), Expect = 1.820e-117 Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 2
Query: 161 MAGVDAAAWMESFKDYLEPVTKIALDVKDKLEGYDYPPAVVDAYKTTATAIGVEDISPVYVGVGVVAASGFLLLACRSCQAAPKKKKGRGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARDLAGKKPKPAAGGAQAAAPKASKKAPTKAPQXQGKGKGKKKPVAEAPPVITEEPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEADPWGAQHAGGEWQTGPMGSQEGEWETVSHKRSKPRKEKAAVDDANAIPGGLGL 1075
MAGVDAAAWMESFKDYLEPVTKIALDVKDKLEGYDYPPAVVDAYKTTATAIGVEDISPVYVGVGVVAASGFLLLACRSCQAAPKKKKGRGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARDLAGKKPKPAAGGAQAAAPKASKKAPTKAPQXQGKGKGKKKPVAEAPPVITEEPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEADPWGAQHAGGEWQTGPMGSQEGEWETVSHKRSKPRKEKAAVDDANAIPGGLGL
Sbjct: 1 MAGVDAAAWMESFKDYLEPVTKIALDVKDKLEGYDYPPAVVDAYKTTATAIGVEDISPVYVGVGVVAASGFLLLACRSCQAAPKKKKGRGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARDLAGKKPKPAAGGAQAAAPKASKKAPTKAPQXQGKGKGKKKPVAEAPPVITEEPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEADPWGAQHAGGEWQTGPMGSQEGEWETVSHKRSKPRKEKAAVDDANAIPGGLGL 305
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_007850.1 |
| Exons | 4 |
| Model size | 1846 |
| Cds size | 918 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930939.3398244-UTR-Ecto-sp9_F_contig886:24688..25456 | 1622930939.3398244-UTR-Ecto-sp9_F_contig886:24688..25456 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig886 24689..25456 - |
| 1692278958.1026626-UTR-Ecto-sp9_F_contig886:24688..25456 | 1692278958.1026626-UTR-Ecto-sp9_F_contig886:24688..25456 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig886 24689..25456 - |
| 1622930939.465457-UTR-Ecto-sp9_F_contig886:28731..28854 | 1622930939.465457-UTR-Ecto-sp9_F_contig886:28731..28854 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig886 28732..28854 - |
| 1692278958.1465743-UTR-Ecto-sp9_F_contig886:28731..28854 | 1692278958.1465743-UTR-Ecto-sp9_F_contig886:28731..28854 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig886 28732..28854 - |
| 1622930939.482896-UTR-Ecto-sp9_F_contig886:29080..29117 | 1622930939.482896-UTR-Ecto-sp9_F_contig886:29080..29117 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig886 29081..29117 - |
| 1692278958.1556785-UTR-Ecto-sp9_F_contig886:29080..29117 | 1692278958.1556785-UTR-Ecto-sp9_F_contig886:29080..29117 | Ectocarpus species9 EcSCA_722f female | UTR | Ecto-sp9_F_contig886 29081..29117 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930939.365118-CDS-Ecto-sp9_F_contig886:25456..25822 | 1622930939.365118-CDS-Ecto-sp9_F_contig886:25456..25822 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig886 25457..25822 - |
| 1692278958.1144254-CDS-Ecto-sp9_F_contig886:25456..25822 | 1692278958.1144254-CDS-Ecto-sp9_F_contig886:25456..25822 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig886 25457..25822 - |
| 1622930939.3889031-CDS-Ecto-sp9_F_contig886:26709..27171 | 1622930939.3889031-CDS-Ecto-sp9_F_contig886:26709..27171 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig886 26710..27171 - |
| 1692278958.1265984-CDS-Ecto-sp9_F_contig886:26709..27171 | 1692278958.1265984-CDS-Ecto-sp9_F_contig886:26709..27171 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig886 26710..27171 - |
| 1622930939.4470701-CDS-Ecto-sp9_F_contig886:28641..28731 | 1622930939.4470701-CDS-Ecto-sp9_F_contig886:28641..28731 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig886 28642..28731 - |
| 1692278958.1370645-CDS-Ecto-sp9_F_contig886:28641..28731 | 1692278958.1370645-CDS-Ecto-sp9_F_contig886:28641..28731 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig886 28642..28731 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig886.17044.1 >prot_Ecto-sp9_F_contig886.17044.1 ID=prot_Ecto-sp9_F_contig886.17044.1|Name=mRNA_Ecto-sp9_F_contig886.17044.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=306bp
MAGVDAAAWMESFKDYLEPVTKIALDVKDKLEGYDYPPAVVDAYKTTATA
IGVEDISPVYVGVGVVAASGFLLLACRSCQAAPKKKKGRGSKKSKARAKA
AANGSVQKNGGSGKGGPVAAAGGAAANGGSGARDLAGKKPKPAAGGAQAA
APKASKKAPTKAPQPQGKGKGKKKPVAEAPPVITEEPEAAKKLNKKKERA
AKKAKAAAAAAAEAAASKKTSKKKSTAANGSTPGGAGSRQAHQNGGGGAG
EADPWGAQHAGGEWQTGPMGSQEGEWETVSHKRSKPRKEKAAVDDANAIP
GGLGL* back to topmRNA from alignment at Ecto-sp9_F_contig886:24689..29117- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig886.17044.1 ID=mRNA_Ecto-sp9_F_contig886.17044.1|Name=mRNA_Ecto-sp9_F_contig886.17044.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4429bp|location=Sequence derived from alignment at Ecto-sp9_F_contig886:24689..29117- (Ectocarpus species9 EcSCA_722f female)
CTTGCTTGCGACTACACTCCCGTAGACTCTACCCGAGGTGAGTCCGGTTG
ATAGAGAGGGTCGTGCATGAAGCAGGGATCGAGCCACATGCGGGATGGCA
AGGATATCGAACATTATAGATCCCAAACTACAAAAGAACTTCGGCATTGT
GACACGGACACGGACGGTCTATCTCCCGCGACGCCCTTCTGCCCCCCCCC
CGTCTCACTCGAACACACACCCGCAATTCCTCCCCGCCCGCTTTCCCGCG
TTGTGTGTCGCAGCCCTCCCTCCCCAGCAGCTCGCACTCTACCCGTGGTA
ATCCACTTCGCTCTGTTAGAGAGGCGCTCTGTCTCTCGTCGACCGTGTGT
GCGGTGCTTGAACGCTTTTGGAGGGAGGGAACAGCAATGGCCGGAGTCGA
CGCTGCCGCGTGGATGGAGAGCTTCAAGGATTACCTGGAGCCGGTGACAA
AGATTGCCCTCGACGTGAAAGACAAGGTAAGCAAGAGCACTTCCTGCTCC
CTTTTGGCCCCGTGGCGCGTTCACTTGTCTGTTTTGCTGCTATTTGGTTC
GGTGGCCCTGTTTCTGCTTTTTTCTTGTGAGCTTTCGTGCGTCGCTCAGC
GCCGCCGGAGGGAAGAGAGCGGAGGAATGTGTGAGTGTGTCCACGAGTTT
AGGAACATGCGCACGGCAGCGCGGCTAGTAGGATGTCTCTCGGTCGACAT
TGACGTGAAAGCGGCGGCGGTGCATAGGTTCCCATTTCCAATCCTGACTT
GGGGAGAAATGCGGTACGAATTTGCGAGGCGGGTGTGCAGAGCCGTAGGT
TAGCCCCCGTGGGAGGGAGAGAACCAAGTGTTTCCCGTGCCTTTGTGTGT
GGACCTCGACGGCGGTGTTCGCGTTGGTCGAATAGCTGTGAGGGCTCAAG
CTTACCGGAACTGCACGCGTCATGGCCGACAAGTTGAGTTTCGGGAGCTT
GCTGGCTGATTTTCTCGCATACCCCGGCCCGTTCTACTGCTTTTGGCCGG
TTTACCCTGCCGATATGCTTATCGCCATTTTGTATGATTGCCAAAACGCA
TTTTCGACAAACCTGCGGTACTATCTCGGATGGGCTGCTGCAGGCTTCTT
CGATTGTCACTTGTACAAGTATGTGTTTTTTATAAAACCTGCCAGAAAAC
CTGCCAGACAGGCAGATTGCAAGTAGTCACCGCAGTACAGCGCAAGTGTC
TGTAGTAGTAGGCATCATGGGCGTCGTGCGAGGTCTGTTGAATCGTACAG
CCTTTGAGTTGTGTTCTGAGAGACTGCACCTACTGTTGCGCGAGGTCTCC
CGATGATAGGCTTTTTCCCTAAAGTGGGATGGGGGTCAGTAACATCAATT
GTTTGCGGAGAGACTCAACAGTAGTCACATGCAAGATTGCTCCAGCTATG
ACTTGGTAGGTATCCCGTGGTGTGTGCGATACACGAGACAAATATGTGAA
ATATTTCGTTGCTTTTTGACTGCACTAGGAAGCAAATGGTAACCTCTGCC
CGGTGGTGGAGGGCACAACATGTAGGGAATTGCGCACCCCATCTCGTTTT
TATGTCCCATGAATCTTTTGTGTTGCGTGTAAAAAAAGCAGCCAAGCGGT
TCAAGTACATCAGGGGCCATTGCGCACTTCCCCTGCTGCCTACCAGTAGT
ACGGTGGTACAGTACGTGTTCCTTGCTGATGCGTCCCGCGGTCACGGATA
TGCACTACAACTTACCATGTTTCCCCACGACACCCTAAGTACGCACTGCT
GTTGTGGCCGACCACAGGTAGTTTTAAGACTATCCTCGCATCGGAGTTGC
AGACATTTCATGCTTGCGTCAAATTATCCACCTAAGCAAGCGAGAGCAAG
GTCAAATCGGACTAGTTGAGCCTTTCCAAGACATGCCATTAGCAAACGTT
TTTAGTGCCCTCCCCCCTTTCCACCTCCTCCGTGTGACGCTTGCAGCTGG
AAGGGTACGACTACCCGCCAGCCGTCGTCGATGCGTACAAAACCACGGCG
ACCGCGATCGGGGTCGAGGATATCAGCCCGGTCTACGTCGGCGTCGGTGT
GGTGGCTGCTTCGGGCTTCCTCCTCTTGGCCTGCCGTAGCTGCCAGGCCG
CCCCAAAGAAGAAAAAGGGGCGTGGATCGAAAAAGTCCAAGGCGAGAGCC
AAGGCGGCTGCTAACGGAAGCGTGCAGAAGAACGGAGGGAGTGGGAAGGG
TGGGCCGGTGGCGGCAGCTGGAGGGGCTGCCGCCAACGGTGGGTCGGGGG
CCCGCGACCTTGCTGGCAAGAAGCCGAAGCCTGCAGCTGGCGGTGCACAG
GCCGCTGCCCCTAAGGCCTCCAAAAAGGCTCCCACGAAGGCACCCCAGCC
CCAGGGGAAGGGCAAGGGCAAGAAAAAACCCGTGGCAGAAGCTCCTCCGG
TGATCACGGTGAGTTGAGGCGAATAGACGCCATTGGTTTGCATGGCCACA
ACGTTCTCAGTGATGGGCGTTCCCGCTCGGGTTGTTATTTTGGATGCCGG
TGTGTGTTTTCGGGTGGGATGTTTTTTGTGTCGGAAGAATGGTGAGTCTC
CACCGAGACCAGTCACCACTGGTTTAGTTTGTAACCTTGTAGACCTTCTG
ACGGATGTTTCTGGATTCGAAGCTCCTAGAGCAGTAGGCTAAAAATACCG
TTGCAAGCCATCGTCGTGAGGAAACACAAACAAGAGGGGAGGGACTGCTG
AACCCATCTGAAGTTGAATAATTTGCAGGAAGGGAGAGAAAATGCGCCAG
TATTATCCATCCTCCTGTGTGACTCCGACTGTTGCGTCAAACACATGCTG
GAGTATTCTGAAAGGTGTAGAGTGGCGCACAGAATAGATTGGATGAACAA
CACATGCACACACACGTACTCTAAAGGAGTTGACCCTCTCGTTGACCTCG
CCGAGGTGTACGGCCGAGAAGGAGGCGTGTGACGGCGCAAGACTTGCAGC
TATGGGTGACAAATTCCGCCGGGTCTAAGCAATAGTAATGTTTTTTTCGC
GGTGGCACCGTGAGAAACAACAACGACGTGAACATTTTAGTTAATGGGTT
GCGAATATTGACAGCCACCGCGTTCTGGTTCAACCACTGCCAAAATAAGG
ATCCGGATGACCTTCGGAACTACCGGAGCTCGACCGGTGCTCCTTCCCCG
TTCCTCCGTTTGGCCCAATCCACCTCCAAGAGGCCCTGCCATAACATTCG
TTAGGTAGTGTGCCCTCTGTCTCGCACCACCGACTGCTGTAGCACTCAAC
TCACGCCCTTCCGCGTGGTCATTGTGTCTGTTGCCCTTACTGCAGGAGGA
GCCGGAGGCGGCGAAAAAGCTTAACAAAAAGAAGGAGAGGGCCGCCAAGA
AGGCCAAAGCGGCGGCGGCGGCGGCGGCAGAAGCAGCAGCCAGTAAAAAG
ACGTCGAAAAAGAAGTCGACGGCAGCGAACGGTTCTACACCGGGCGGGGC
AGGATCCCGGCAGGCACACCAAAACGGGGGTGGCGGTGCCGGAGAAGCCG
ACCCCTGGGGGGCGCAGCATGCAGGAGGCGAATGGCAGACGGGACCCATG
GGCTCGCAAGAGGGGGAGTGGGAAACGGTTTCCCACAAGAGGTCCAAGCC
TCGGAAGGAGAAGGCGGCGGTGGACGATGCGAACGCCATCCCCGGCGGAC
TCGGGCTTTGACCGACGCTTTGGTGTTGTTGGTGCCCATATCCATCGTCC
ATCGTGGGCTGGAATTGGGGCCCCGCGGTGCTCCTCGGCAGTGACGGCGG
TCTGCCGGTCCTCTGTTGTGCGTGTTTATTATCTCGTATTTTCTGTTGCA
GCATACGGAGTATGATCAAGTTGGCGGTCGCTGGCGGGTGGTGTTTCCCG
TTTCCCCGTCTGTTGAGGGCTGTCGAGGTATGGACGGCGGTTAGGACAGC
GGTGTAGCTGTCGTGCGTAAGCAAGCAGAGTCGATGGGTGCGGTAACCTA
GAGCGCGTGGCAGGTGAAACAGGTCGAACGCCAGGCGATATGCACACTAG
GCGAGCGTGTAAACCTTGGGGGCACATTTGATTGATGCAGATAAACGCTT
GTTGGCAGTGTTGGTGTGCGTTAGATGGGAGATAAACTGTGGCGCATGGG
GTAGCAGGTTAAGAATTTAGGTATGGGACAGTCGACAAGCAGTATCATGT
TGTTCGGCAGGTTGCGCAACGCGCAAACTATTAGGGTTAAACTTAAATCT
TGTGTGTGAAATGAGGGAATCGTCCTAGAAAGTACTTGGGAAGATGTTTC
CCTTTCGAGGGTCATCACCACGGTATCCTCCACGTTCTATGAGACTTGAG
GTGTAAGCGGAACCCGACCGCCCGGCTGCGAGTTAAACAGGTGCGCTACG
TCCACCACGTCACCAAAGTCTCATCACTTCGGAAGTCTTCTCGTTTGTCC
AAAATCAGATCCCTCTGCGTCGACGCCAG back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig886:24689..29117- >mRNA_Ecto-sp9_F_contig886.17044.1 ID=mRNA_Ecto-sp9_F_contig886.17044.1|Name=mRNA_Ecto-sp9_F_contig886.17044.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1836bp|location=Sequence derived from alignment at Ecto-sp9_F_contig886:24689..29117- (Ectocarpus species9 EcSCA_722f female)
ATGGCCGGAGTCGACGCTGCCGCGTGGATGGAGAGCTTCAAGGATTACCT
GGAGCCGGTGACAAAGATTGCCCTCGACGTGAAAGACAAGATGGCCGGAG
TCGACGCTGCCGCGTGGATGGAGAGCTTCAAGGATTACCTGGAGCCGGTG
ACAAAGATTGCCCTCGACGTGAAAGACAAGCTGGAAGGGTACGACTACCC
GCCAGCCGTCGTCGATGCGTACAAAACCACGGCGACCGCGATCGGGGTCG
AGGATATCAGCCCGGTCTACGTCGGCGTCGGTGTGGTGGCTGCTTCGGGC
TTCCTCCTCTTGGCCTGCCGTAGCTGCCAGGCCGCCCCAAAGAAGAAAAA
GGGGCGTGGATCGAAAAAGTCCAAGGCGAGAGCCAAGGCGGCTGCTAACG
GAAGCGTGCAGAAGAACGGAGGGAGTGGGAAGGGTGGGCCGGTGGCGGCA
GCTGGAGGGGCTGCCGCCAACGGTGGGTCGGGGGCCCGCGACCTTGCTGG
CAAGAAGCCGAAGCCTGCAGCTGGCGGTGCACAGGCCGCTGCCCCTAAGG
CCTCCAAAAAGGCTCCCACGAAGGCACCCCAGCCCCAGGGGAAGGGCAAG
GGCAAGAAAAAACCCGTGGCAGAAGCTCCTCCGGTGATCACGCTGGAAGG
GTACGACTACCCGCCAGCCGTCGTCGATGCGTACAAAACCACGGCGACCG
CGATCGGGGTCGAGGATATCAGCCCGGTCTACGTCGGCGTCGGTGTGGTG
GCTGCTTCGGGCTTCCTCCTCTTGGCCTGCCGTAGCTGCCAGGCCGCCCC
AAAGAAGAAAAAGGGGCGTGGATCGAAAAAGTCCAAGGCGAGAGCCAAGG
CGGCTGCTAACGGAAGCGTGCAGAAGAACGGAGGGAGTGGGAAGGGTGGG
CCGGTGGCGGCAGCTGGAGGGGCTGCCGCCAACGGTGGGTCGGGGGCCCG
CGACCTTGCTGGCAAGAAGCCGAAGCCTGCAGCTGGCGGTGCACAGGCCG
CTGCCCCTAAGGCCTCCAAAAAGGCTCCCACGAAGGCACCCCAGCCCCAG
GGGAAGGGCAAGGGCAAGAAAAAACCCGTGGCAGAAGCTCCTCCGGTGAT
CACGGAGGAGCCGGAGGCGGCGAAAAAGCTTAACAAAAAGAAGGAGAGGG
CCGCCAAGAAGGCCAAAGCGGCGGCGGCGGCGGCGGCAGAAGCAGCAGCC
AGTAAAAAGACGTCGAAAAAGAAGTCGACGGCAGCGAACGGTTCTACACC
GGGCGGGGCAGGATCCCGGCAGGCACACCAAAACGGGGGTGGCGGTGCCG
GAGAAGCCGACCCCTGGGGGGCGCAGCATGCAGGAGGCGAATGGCAGACG
GGACCCATGGGCTCGCAAGAGGGGGAGTGGGAAACGGTTTCCCACAAGAG
GTCCAAGCCTCGGAAGGAGAAGGCGGCGGTGGACGATGCGAACGCCATCC
CCGGCGGACTCGGGCTTTGAGAGGAGCCGGAGGCGGCGAAAAAGCTTAAC
AAAAAGAAGGAGAGGGCCGCCAAGAAGGCCAAAGCGGCGGCGGCGGCGGC
GGCAGAAGCAGCAGCCAGTAAAAAGACGTCGAAAAAGAAGTCGACGGCAG
CGAACGGTTCTACACCGGGCGGGGCAGGATCCCGGCAGGCACACCAAAAC
GGGGGTGGCGGTGCCGGAGAAGCCGACCCCTGGGGGGCGCAGCATGCAGG
AGGCGAATGGCAGACGGGACCCATGGGCTCGCAAGAGGGGGAGTGGGAAA
CGGTTTCCCACAAGAGGTCCAAGCCTCGGAAGGAGAAGGCGGCGGTGGAC
GATGCGAACGCCATCCCCGGCGGACTCGGGCTTTGA back to top
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