mRNA_Ecto-sp9_F_contig886.17040.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEG6_9PHAE) HSP 1 Score: 570 bits (1470), Expect = 8.290e-200 Identity = 301/314 (95.86%), Postives = 309/314 (98.41%), Query Frame = 1
Query: 1 SVAAATEKGDADSQSDEEDDEIATPAFNIDKLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDKKKGTK 942
SVAAATEKGDADSQSDE+DDE+ATPAFNIDKLKAETKTPFRTFRIF+YGAFG+SALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKIT DVNADRVKQLRALSVKVPGSG+GAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSI+AAMLAKNQIFPSLNLLVVPVEMEVA+DGKGAKGLAKGFGTSLSYEEQGYVAAPVDE GWRALM EEFEAAERQGVVA+SSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDK KG K
Sbjct: 95 SVAAATEKGDADSQSDEQDDEVATPAFNIDKLKAETKTPFRTFRIFIYGAFGVSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITSDVNADRVKQLRALSVKVPGSGNGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSILAAMLAKNQIFPSLNLLVVPVEMEVASDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEDGWRALMREEFEAAERQGVVAQSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDKTKGAK 408
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z880_9STRA) HSP 1 Score: 213 bits (543), Expect = 2.100e-61 Identity = 133/308 (43.18%), Postives = 191/308 (62.01%), Query Frame = 1
Query: 46 DEEDDEIATPA-------FNIDKLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEA-----------KQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDP 915
+EE + ATPA F+ KL AE TPFRT R+F+YGAF SALIGG+T+ TQLAA++++Q AL L + L+N+ VDFGV+A + YNFE Q++ L + + A RE+ K + I +V RV++LR L +++ S S K P+GVLM EA KQ ++AGGKE +RD+++ A + + +IF + NLL+VPV++ +D A KGFG +Y +QG+V P +E WRAL+ EE A+RQG + K G+VL+VS+ GKVLRRG+G+P W++IR D+ P
Sbjct: 13 EEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSES-----ETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNR-EIFTANNLLIVPVQVADPSDPTAAV-TDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQG--NSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYP 311
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A636_9STRA) HSP 1 Score: 139 bits (349), Expect = 2.770e-33 Identity = 100/276 (36.23%), Postives = 148/276 (53.62%), Query Frame = 1
Query: 91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPP 918
KL E ++P+RT R F+YGAF LSA +GG+T+LTQLAA +S QP AL L++ + N++VDFGV+AA A+ + + LE+ + A +T I + A + L+ L V V G + A V L A QA V+AG V D++ A++ + + + +LVVPV + + A G S SY G+VA PVD W+A E A QG A+++ +DGIV+ V G V RRG+G P+W ++ ++ PP
Sbjct: 79 KLLQEAESPWRTVRKFIYGAFALSATVGGLTALTQLAAAVSKQPDALPLEQTIQNVVVDFGVVAACAYGAKVDGAADSGLEEDDGAP--------STTIDDEAIAANLATLQKLEVTVAGE---------RVANVETLRTAANQAVVVVAGPSSVVDDALRDALIEQKTL-AAAEVLVVPVRTSAEDAVEAAMGRR-----SDSY---GFVAPPVDAAKWKAYAAAECAVAAGQG--AETAAEDGIVIAVRADGTVARRGLGKPVWKMVAAELSPP 326
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN68_9STRA) HSP 1 Score: 133 bits (335), Expect = 9.580e-31 Identity = 106/292 (36.30%), Postives = 153/292 (52.40%), Query Frame = 1
Query: 94 LKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQED----LEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVK-------VPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGK-EFVRDSIVAAMLAKNQIFPSLNLLVVPVEME----VANDGKGAKGLAKGFG-TSLSYEEQGYVA--APVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVD 912
++ E +PFR R FVYGA L +G +T+L+QLAA +S GA E+ K N +DF V+AAA + F++ Q+E LE VE NR K+T D ++ LR L+V VP S E +A V L+ +A + V A E V++++V A + Q F + N+L+VPVE+E A GA KGFG TS + EQGYVA AP E W +E+E AE QG V + K+GI + + K V RRG+G+P+W + ++++
Sbjct: 122 MQEEITSPFRGLRFFVYGAGFLGGGVGFLTALSQLAAGVSGVEGAPEVAKSATNAAIDFAVVAAAIAGWRFDSKQREQKIGALEDVETRNR--------GKVTDDAATAKLAALRELNVMLSIADADVPEGFSAPEGAVGLKAKVDDLLGKASSSVVVFASTSGERVKEALVKAQILGEQEFLNKNVLIVPVELEKLRRAARGAAGASTEKKGFGATSPVWMEQGYVAPPAPGTEKAWLEYVEQEIADAEAQGAV--NPAKEGIAICLRKNKTVSRRGLGVPLWEDVINELN 403
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S088_9STRA) HSP 1 Score: 127 bits (318), Expect = 2.980e-29 Identity = 102/300 (34.00%), Postives = 155/300 (51.67%), Query Frame = 1
Query: 55 DDEIATPAFNIDKLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKG-AKGLAKGFGTSLSY-----EEQGYVAAPVDEYGWRALMEEEFEAAERQ--GVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDKK 930
DDE+ D+L+ E PFR R FVYG+ G SA IGG TS TQLAA+ S AL ++L N+ +D V+ A+ + +++ QQ+ Q A R+KR K TK+ +L+ LS++V GS + ++A V L + AKQ V+AG VR+S++ A + + F N+LVVP D G +KG AK S Y E A PV++ W + ++ E + A Q G +GIV+++++ GK++RRG+G+P+W + DD+ P K
Sbjct: 21 DDEVTAS----DRLREEAANPFRLLRYFVYGSAGASAAIGGFTSATQLAASASGVSNALPQDQLLQNIAIDGAVILASIGLWRWDSEQQKQALQRMVA-RDKRSK---TKLDTSAQKSLASELQGLSLEVVVGGSE---DATRQATVQELNEGAKQHLVVVAGTTSMVRESLIKAQILGER-FARQNVLVVPYYF----DSNGPSKGFAKDTLISKPYIARIPETSDVSANPVED--WASYIQRELDTAVSQSPGATTVDLKAEGIVVVLNRDGKIVRRGLGVPLWATVIDDLAPAQASK 302
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=3 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A3N0_TRICV) HSP 1 Score: 122 bits (305), Expect = 1.770e-26 Identity = 92/280 (32.86%), Postives = 150/280 (53.57%), Query Frame = 1
Query: 91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLE-QVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEYGWRALMEEEF-EAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPD 924
KL +E+ P+RT R+F+Y + G A IGG+ +L+ +AA LS G +++ +NL +DFG A AF + ++ + +L VEA KR+ K + + R + L+ L++ V S G + KEA V L AKQ V+AGG++ +RD+++ A L + F ++LVVP E V+ + ++ + GFG +E YVA V + GW +E E +A E+ G K +DGI ++V G ++RRGVG W + ++++ D
Sbjct: 153 KLLSESIAPWRTVRLFLYASLGSGAFIGGLVTLSGVAAALSGVKGEVDMNTEYLNLAIDFGAAATFAFLFKYDVDKGSELNTNVEAKLERKRRDKKLS----EAMKARERTLQDLNLSVRVSADGKQT---KEASVSALQTGAKQHLIVVAGGRQAIRDALLGANLMQMD-FALRDVLVVPYEYGVSAAERQSRP-SGGFGERPQWETANYVAECVGD-GWEEYIESEMADAVEQNGEKVK---EDGIAIVVKNTGSIIRRGVGKVPWRDMVNELEGTKD 419
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLX4_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.440e-24 Identity = 88/281 (31.32%), Postives = 143/281 (50.89%), Query Frame = 1
Query: 91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDKKK 933
KL AE+ P+RT R+F YG+ G A +GG+ +LT +AA LS L+L +NL +DFG AA AF + + E E + +K + K K + +R K L L++ + + GA + A VG + KQ ++AG ++ RD+++ A + K F N+LVVP + + K K + GF +E Q YVA + GW ++ E A +QG + +GI ++++ GKV+RRGVG+ W + D+++ + K+
Sbjct: 75 KLLAESIAPWRTVRLFAYGSLGSGAAVGGLITLTGVAAALSGARADLDLNTEYLNLAIDFG--AALAFAVFAKLDLDKGAELSEKVD-DKMARKKEQKTIANEMKEREKGLSKLNLDICVAADGAT----QTAQVGAIQTGGKQHIIIVAGPRKACRDALMGANILKLD-FSMSNILVVPYDTSTTKEDKVLKP-SGGFADKPLWESQPYVAQTTGD-GWEEYIDAEMTDAVKQG--GEKVKNEGIAIVLANNGKVIRRGVGMIPWRKMVDELEAATNPKE 343
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W6I2_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.140e-23 Identity = 91/270 (33.70%), Postives = 143/270 (52.96%), Query Frame = 1
Query: 91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKR-QKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLA-KGFG--TSLSYEEQGYVAAPVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMW 888
KL +E+ P+RT R+F Y A G A +GG+ +LT +AATLS P ++L +NL +DFG +AA A + F+ Q +L++ N E R QK K K+ +R L L + + S G + EA + KQ ++AG + +RD+++ A L K + F ++LVVP E++ K ++ A KGF + ++E Q YVA+ V + GW +E E A +Q + ++GI ++V+ GK+ RRGVG W
Sbjct: 70 KLVSESIAPWRTLRLFFYVALGSGAFLGGLVTLTGVAATLSGAPSDVDLNTDYVNLAIDFGFVAAFAVLFKFDKDQGIELQE----NVEIRIQKKKEDKVIKKGMKERESTLGKLMLNIRISDDGKTQDALVEA----VQQGGKQHMIIVAGPRSAIRDALLGANLLKME-FSMRDVLVVPYELDKDESDKMSRPDATKGFSGDSRPTWETQPYVASVVGK-GWDEYIEAELSDAIKQS--GEKVKEEGIAIVVANTGKITRRGVGKVPW 327
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V5_AURAN) HSP 1 Score: 114 bits (284), Expect = 5.470e-23 Identity = 93/276 (33.70%), Postives = 141/276 (51.09%), Query Frame = 1
Query: 91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPV--DEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVD 912
KL E +TP+RT R F YGAFGLSA +GGIT+L Q AA+++ QP AL L + +N+LVD GV+AA + + + + D+ + + + DV R + L V V G G +L+ + A V L +A QA VL G + V D+++ A++ +N F +VVPV ++ DG GA +L+ +E +VA P D WR+ +E+E A QG + G+V+ + + G V R VG P W + +D
Sbjct: 53 KLLQEAQTPWRTVRTFFYGAFGLSATVGGITALAQTAASVAGQPDALPLSQCGVNVLVDAGVVAACLYGNSVDNGEAADITVAD----------ETAPLADDVAEARRDAVAKLRVDV---GLG-DLK--RSAAVRTLQRDAGQAVVVLGGPRAAVDDALLDALIQRNA-FARAECVVVPVRLD---DGAGAAPATN----ALTVDEAPFVALPNADDAAAWRSYLEDELATAADQGADTSA----GVVVALRRDGTVASRNVGKPPWPQLIAAID 300
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8B4J3_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.880e-21 Identity = 85/278 (30.58%), Postives = 137/278 (49.28%), Query Frame = 1
Query: 91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVA--APVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPP 918
+L E TP+R R F YGAFG SA +GG+T+L QL +L+ + +L L KV+ N+ +DFGV+AA + + D+ N +T D A R L L V V G E + +EA + L A+Q+F V+AG + + D++ A++ + ++F +VVPV E K + + G+VA +P D W + E A++QG +++ +GIV+ V + G + RRGVG P W + ++++ P
Sbjct: 64 RLMQEASTPWRGLRNFFYGAFGFSASVGGLTALAQLVGSLTGRADSLPLIKVITNVGIDFGVVAACVAGWRIDARATADVTTSLDEN---------VALTDDEAAARTSSLLKLRVSV-----GLE-DNRREATLDTLRSVARQSFIVIAGPRAAIDDALKDALI-QQKLFAKSECVVVPVASEKDPVLVPNKPVYR----------SGFVALPSPDDAMAWTDFVAAEIATAKQQGC-DENALSNGIVIAVRRDGTIARRGVGRPPWKSLLNEIETP 314 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig886.17040.1 >prot_Ecto-sp9_F_contig886.17040.1 ID=prot_Ecto-sp9_F_contig886.17040.1|Name=mRNA_Ecto-sp9_F_contig886.17040.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=223bp MAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRback to top mRNA from alignment at Ecto-sp9_F_contig886:8..3805+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig886.17040.1 ID=mRNA_Ecto-sp9_F_contig886.17040.1|Name=mRNA_Ecto-sp9_F_contig886.17040.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3798bp|location=Sequence derived from alignment at Ecto-sp9_F_contig886:8..3805+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig886:8..3805+ >mRNA_Ecto-sp9_F_contig886.17040.1 ID=mRNA_Ecto-sp9_F_contig886.17040.1|Name=mRNA_Ecto-sp9_F_contig886.17040.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1338bp|location=Sequence derived from alignment at Ecto-sp9_F_contig886:8..3805+ (Ectocarpus species9 EcSCA_722f female)back to top |