mRNA_Ecto-sp9_F_contig886.17040.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig886.17040.1
Unique NamemRNA_Ecto-sp9_F_contig886.17040.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEG6_9PHAE)

HSP 1 Score: 570 bits (1470), Expect = 8.290e-200
Identity = 301/314 (95.86%), Postives = 309/314 (98.41%), Query Frame = 1
Query:    1 SVAAATEKGDADSQSDEEDDEIATPAFNIDKLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDKKKGTK 942
            SVAAATEKGDADSQSDE+DDE+ATPAFNIDKLKAETKTPFRTFRIF+YGAFG+SALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKIT DVNADRVKQLRALSVKVPGSG+GAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSI+AAMLAKNQIFPSLNLLVVPVEMEVA+DGKGAKGLAKGFGTSLSYEEQGYVAAPVDE GWRALM EEFEAAERQGVVA+SSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDK KG K
Sbjct:   95 SVAAATEKGDADSQSDEQDDEVATPAFNIDKLKAETKTPFRTFRIFIYGAFGVSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITSDVNADRVKQLRALSVKVPGSGNGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSILAAMLAKNQIFPSLNLLVVPVEMEVASDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEDGWRALMREEFEAAERQGVVAQSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDKTKGAK 408          
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z880_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.100e-61
Identity = 133/308 (43.18%), Postives = 191/308 (62.01%), Query Frame = 1
Query:   46 DEEDDEIATPA-------FNIDKLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEA-----------KQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDP 915
            +EE +  ATPA       F+  KL AE  TPFRT R+F+YGAF  SALIGG+T+ TQLAA++++Q  AL L + L+N+ VDFGV+A   + YNFE  Q++ L + + A RE+    K + I  +V   RV++LR L +++  S S       K  P+GVLM EA           KQ   ++AGGKE +RD+++ A + + +IF + NLL+VPV++   +D   A    KGFG   +Y +QG+V  P +E  WRAL+ EE   A+RQG     + K G+VL+VS+ GKVLRRG+G+P W++IR D+ P
Sbjct:   13 EEESNSTATPAEQDDRGSFDKSKLAAEVSTPFRTLRLFIYGAFATSALIGGLTACTQLAASVANQLDALPLSQCLLNVGVDFGVVAVCVYAYNFENKQRQGLVEQKRAEREQAALRKQSVIPEEVTKSRVERLRELQIRLTVSES-----ETKNVPLGVLMQEAQHGLVLWHLEAKQDVVLVAGGKEMLRDAMLRATVNR-EIFTANNLLIVPVQVADPSDPTAAV-TDKGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQG--NSKAAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYP 311          
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A636_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.770e-33
Identity = 100/276 (36.23%), Postives = 148/276 (53.62%), Query Frame = 1
Query:   91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPP 918
            KL  E ++P+RT R F+YGAF LSA +GG+T+LTQLAA +S QP AL L++ + N++VDFGV+AA A+    + +    LE+ + A         +T I  +  A  +  L+ L V V G          + A V  L   A QA  V+AG    V D++  A++ +  +  +  +LVVPV     +  + A G       S SY   G+VA PVD   W+A    E   A  QG  A+++ +DGIV+ V   G V RRG+G P+W ++  ++ PP
Sbjct:   79 KLLQEAESPWRTVRKFIYGAFALSATVGGLTALTQLAAAVSKQPDALPLEQTIQNVVVDFGVVAACAYGAKVDGAADSGLEEDDGAP--------STTIDDEAIAANLATLQKLEVTVAGE---------RVANVETLRTAANQAVVVVAGPSSVVDDALRDALIEQKTL-AAAEVLVVPVRTSAEDAVEAAMGRR-----SDSY---GFVAPPVDAAKWKAYAAAECAVAAGQG--AETAAEDGIVIAVRADGTVARRGLGKPVWKMVAAELSPP 326          
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN68_9STRA)

HSP 1 Score: 133 bits (335), Expect = 9.580e-31
Identity = 106/292 (36.30%), Postives = 153/292 (52.40%), Query Frame = 1
Query:   94 LKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQED----LEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVK-------VPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGK-EFVRDSIVAAMLAKNQIFPSLNLLVVPVEME----VANDGKGAKGLAKGFG-TSLSYEEQGYVA--APVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVD 912
            ++ E  +PFR  R FVYGA  L   +G +T+L+QLAA +S   GA E+ K   N  +DF V+AAA   + F++ Q+E     LE VE  NR         K+T D    ++  LR L+V        VP   S  E     +A V  L+ +A  +  V A    E V++++V A +   Q F + N+L+VPVE+E     A    GA    KGFG TS  + EQGYVA  AP  E  W   +E+E   AE QG V  +  K+GI + + K   V RRG+G+P+W  + ++++
Sbjct:  122 MQEEITSPFRGLRFFVYGAGFLGGGVGFLTALSQLAAGVSGVEGAPEVAKSATNAAIDFAVVAAAIAGWRFDSKQREQKIGALEDVETRNR--------GKVTDDAATAKLAALRELNVMLSIADADVPEGFSAPEGAVGLKAKVDDLLGKASSSVVVFASTSGERVKEALVKAQILGEQEFLNKNVLIVPVELEKLRRAARGAAGASTEKKGFGATSPVWMEQGYVAPPAPGTEKAWLEYVEQEIADAEAQGAV--NPAKEGIAICLRKNKTVSRRGLGVPLWEDVINELN 403          
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S088_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.980e-29
Identity = 102/300 (34.00%), Postives = 155/300 (51.67%), Query Frame = 1
Query:   55 DDEIATPAFNIDKLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKG-AKGLAKGFGTSLSY-----EEQGYVAAPVDEYGWRALMEEEFEAAERQ--GVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDKK 930
            DDE+       D+L+ E   PFR  R FVYG+ G SA IGG TS TQLAA+ S    AL   ++L N+ +D  V+ A+   + +++ QQ+   Q   A R+KR K   TK+          +L+ LS++V   GS    +  ++A V  L + AKQ   V+AG    VR+S++ A +   + F   N+LVVP       D  G +KG AK    S  Y     E     A PV++  W + ++ E + A  Q  G        +GIV+++++ GK++RRG+G+P+W  + DD+ P    K
Sbjct:   21 DDEVTAS----DRLREEAANPFRLLRYFVYGSAGASAAIGGFTSATQLAASASGVSNALPQDQLLQNIAIDGAVILASIGLWRWDSEQQKQALQRMVA-RDKRSK---TKLDTSAQKSLASELQGLSLEVVVGGSE---DATRQATVQELNEGAKQHLVVVAGTTSMVRESLIKAQILGER-FARQNVLVVPYYF----DSNGPSKGFAKDTLISKPYIARIPETSDVSANPVED--WASYIQRELDTAVSQSPGATTVDLKAEGIVVVLNRDGKIVRRGLGVPLWATVIDDLAPAQASK 302          
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=3 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A3N0_TRICV)

HSP 1 Score: 122 bits (305), Expect = 1.770e-26
Identity = 92/280 (32.86%), Postives = 150/280 (53.57%), Query Frame = 1
Query:   91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLE-QVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEYGWRALMEEEF-EAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPD 924
            KL +E+  P+RT R+F+Y + G  A IGG+ +L+ +AA LS   G +++    +NL +DFG  A  AF + ++  +  +L   VEA    KR+  K +    +    R + L+ L++ V  S  G +    KEA V  L   AKQ   V+AGG++ +RD+++ A L +   F   ++LVVP E  V+   + ++  + GFG    +E   YVA  V + GW   +E E  +A E+ G   K   +DGI ++V   G ++RRGVG   W  + ++++   D
Sbjct:  153 KLLSESIAPWRTVRLFLYASLGSGAFIGGLVTLSGVAAALSGVKGEVDMNTEYLNLAIDFGAAATFAFLFKYDVDKGSELNTNVEAKLERKRRDKKLS----EAMKARERTLQDLNLSVRVSADGKQT---KEASVSALQTGAKQHLIVVAGGRQAIRDALLGANLMQMD-FALRDVLVVPYEYGVSAAERQSRP-SGGFGERPQWETANYVAECVGD-GWEEYIESEMADAVEQNGEKVK---EDGIAIVVKNTGSIIRRGVGKVPWRDMVNELEGTKD 419          
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLX4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.440e-24
Identity = 88/281 (31.32%), Postives = 143/281 (50.89%), Query Frame = 1
Query:   91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDKKK 933
            KL AE+  P+RT R+F YG+ G  A +GG+ +LT +AA LS     L+L    +NL +DFG  AA AF    +    +  E  E  + +K  + K  K   +   +R K L  L++ +  +  GA     + A VG +    KQ   ++AG ++  RD+++ A + K   F   N+LVVP +     + K  K  + GF     +E Q YVA    + GW   ++ E   A +QG   +    +GI ++++  GKV+RRGVG+  W  + D+++   + K+
Sbjct:   75 KLLAESIAPWRTVRLFAYGSLGSGAAVGGLITLTGVAAALSGARADLDLNTEYLNLAIDFG--AALAFAVFAKLDLDKGAELSEKVD-DKMARKKEQKTIANEMKEREKGLSKLNLDICVAADGAT----QTAQVGAIQTGGKQHIIIVAGPRKACRDALMGANILKLD-FSMSNILVVPYDTSTTKEDKVLKP-SGGFADKPLWESQPYVAQTTGD-GWEEYIDAEMTDAVKQG--GEKVKNEGIAIVLANNGKVIRRGVGMIPWRKMVDELEAATNPKE 343          
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W6I2_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.140e-23
Identity = 91/270 (33.70%), Postives = 143/270 (52.96%), Query Frame = 1
Query:   91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKR-QKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLA-KGFG--TSLSYEEQGYVAAPVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMW 888
            KL +E+  P+RT R+F Y A G  A +GG+ +LT +AATLS  P  ++L    +NL +DFG +AA A  + F+  Q  +L++    N E R QK K  K+      +R   L  L + +  S  G   +   EA    +    KQ   ++AG +  +RD+++ A L K + F   ++LVVP E++     K ++  A KGF   +  ++E Q YVA+ V + GW   +E E   A +Q    +   ++GI ++V+  GK+ RRGVG   W
Sbjct:   70 KLVSESIAPWRTLRLFFYVALGSGAFLGGLVTLTGVAATLSGAPSDVDLNTDYVNLAIDFGFVAAFAVLFKFDKDQGIELQE----NVEIRIQKKKEDKVIKKGMKERESTLGKLMLNIRISDDGKTQDALVEA----VQQGGKQHMIIVAGPRSAIRDALLGANLLKME-FSMRDVLVVPYELDKDESDKMSRPDATKGFSGDSRPTWETQPYVASVVGK-GWDEYIEAELSDAIKQS--GEKVKEEGIAIVVANTGKITRRGVGKVPW 327          
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V5_AURAN)

HSP 1 Score: 114 bits (284), Expect = 5.470e-23
Identity = 93/276 (33.70%), Postives = 141/276 (51.09%), Query Frame = 1
Query:   91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVAAPV--DEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVD 912
            KL  E +TP+RT R F YGAFGLSA +GGIT+L Q AA+++ QP AL L +  +N+LVD GV+AA  +  + +  +  D+   +          +   +  DV   R   +  L V V   G G +L+  + A V  L  +A QA  VL G +  V D+++ A++ +N  F     +VVPV ++   DG GA         +L+ +E  +VA P   D   WR+ +E+E   A  QG    +    G+V+ + + G V  R VG P W  +   +D
Sbjct:   53 KLLQEAQTPWRTVRTFFYGAFGLSATVGGITALAQTAASVAGQPDALPLSQCGVNVLVDAGVVAACLYGNSVDNGEAADITVAD----------ETAPLADDVAEARRDAVAKLRVDV---GLG-DLK--RSAAVRTLQRDAGQAVVVLGGPRAAVDDALLDALIQRNA-FARAECVVVPVRLD---DGAGAAPATN----ALTVDEAPFVALPNADDAAAWRSYLEDELATAADQGADTSA----GVVVALRRDGTVASRNVGKPPWPQLIAAID 300          
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8B4J3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.880e-21
Identity = 85/278 (30.58%), Postives = 137/278 (49.28%), Query Frame = 1
Query:   91 KLKAETKTPFRTFRIFVYGAFGLSALIGGITSLTQLAATLSDQPGALELQKVLINLLVDFGVMAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLRALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVAAMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVA--APVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPP 918
            +L  E  TP+R  R F YGAFG SA +GG+T+L QL  +L+ +  +L L KV+ N+ +DFGV+AA    +  +     D+      N           +T D  A R   L  L V V     G E +  +EA +  L   A+Q+F V+AG +  + D++  A++ + ++F     +VVPV  E        K + +           G+VA  +P D   W   +  E   A++QG   +++  +GIV+ V + G + RRGVG P W  + ++++ P
Sbjct:   64 RLMQEASTPWRGLRNFFYGAFGFSASVGGLTALAQLVGSLTGRADSLPLIKVITNVGIDFGVVAACVAGWRIDARATADVTTSLDEN---------VALTDDEAAARTSSLLKLRVSV-----GLE-DNRREATLDTLRSVARQSFIVIAGPRAAIDDALKDALI-QQKLFAKSECVVVPVASEKDPVLVPNKPVYR----------SGFVALPSPDDAMAWTDFVAAEIATAKQQGC-DENALSNGIVIAVRRDGTIARRGVGRPPWKSLLNEIETP 314          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig886.17040.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Uncharacterized8.290e-20095.86protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Uncharacterized2.100e-6143.18protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical2.770e-3336.23protein n=2 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical9.580e-3136.30protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical2.980e-2934.00protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical1.770e-2632.86protein n=3 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Hypothetical3.440e-2431.32protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Hypothetical2.140e-2333.70protein (Fragment) n=1 Tax=Eucampia antarctica Tax... [more]
C25.470e-2333.70domain-containing protein n=1 Tax=Aureococcus anop... [more]
Hypothetical1.880e-2130.58protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig886contigEcto-sp9_F_contig886:8..3805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.1
Seed ortholog evalue1.3e-114
Seed eggNOG ortholog2880.D7FLE8
EggNOG free text desc.Protein of unknown function (DUF3493)
EggNOG OGs2DEZ3@1,2S5R7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF3493
Ec32 orthologEc-12_007890.1
Exons6
Model size1545
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig886.17040.1prot_Ecto-sp9_F_contig886.17040.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig886 1224..3205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.5114703-UTR-Ecto-sp9_F_contig886:7..1331622930938.5114703-UTR-Ecto-sp9_F_contig886:7..133Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig886 8..133 +
1692278957.7679105-UTR-Ecto-sp9_F_contig886:7..1331692278957.7679105-UTR-Ecto-sp9_F_contig886:7..133Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig886 8..133 +
1622930938.527379-UTR-Ecto-sp9_F_contig886:705..7841622930938.527379-UTR-Ecto-sp9_F_contig886:705..784Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig886 706..784 +
1692278957.8111584-UTR-Ecto-sp9_F_contig886:705..7841692278957.8111584-UTR-Ecto-sp9_F_contig886:705..784Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig886 706..784 +
1622930938.5438256-UTR-Ecto-sp9_F_contig886:1152..12231622930938.5438256-UTR-Ecto-sp9_F_contig886:1152..1223Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig886 1153..1223 +
1692278957.8232286-UTR-Ecto-sp9_F_contig886:1152..12231692278957.8232286-UTR-Ecto-sp9_F_contig886:1152..1223Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig886 1153..1223 +
1622930938.7705197-UTR-Ecto-sp9_F_contig886:3205..38051622930938.7705197-UTR-Ecto-sp9_F_contig886:3205..3805Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig886 3206..3805 +
1692278957.8843052-UTR-Ecto-sp9_F_contig886:3205..38051692278957.8843052-UTR-Ecto-sp9_F_contig886:3205..3805Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig886 3206..3805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.5768619-CDS-Ecto-sp9_F_contig886:1223..12581622930938.5768619-CDS-Ecto-sp9_F_contig886:1223..1258Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig886 1224..1258 +
1692278957.842172-CDS-Ecto-sp9_F_contig886:1223..12581692278957.842172-CDS-Ecto-sp9_F_contig886:1223..1258Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig886 1224..1258 +
1622930938.5907977-CDS-Ecto-sp9_F_contig886:1765..19401622930938.5907977-CDS-Ecto-sp9_F_contig886:1765..1940Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig886 1766..1940 +
1692278957.8565886-CDS-Ecto-sp9_F_contig886:1765..19401692278957.8565886-CDS-Ecto-sp9_F_contig886:1765..1940Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig886 1766..1940 +
1622930938.605418-CDS-Ecto-sp9_F_contig886:2291..25431622930938.605418-CDS-Ecto-sp9_F_contig886:2291..2543Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig886 2292..2543 +
1692278957.8666284-CDS-Ecto-sp9_F_contig886:2291..25431692278957.8666284-CDS-Ecto-sp9_F_contig886:2291..2543Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig886 2292..2543 +
1622930938.749554-CDS-Ecto-sp9_F_contig886:2998..32051622930938.749554-CDS-Ecto-sp9_F_contig886:2998..3205Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig886 2999..3205 +
1692278957.8756616-CDS-Ecto-sp9_F_contig886:2998..32051692278957.8756616-CDS-Ecto-sp9_F_contig886:2998..3205Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig886 2999..3205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig886.17040.1

>prot_Ecto-sp9_F_contig886.17040.1 ID=prot_Ecto-sp9_F_contig886.17040.1|Name=mRNA_Ecto-sp9_F_contig886.17040.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=223bp
MAAAAFCYNFETSQQEDLEQVEAANREKRQKLKATKITGDVNADRVKQLR
ALSVKVPGSGSGAELEGAKEAPVGVLMDEAKQAFCVLAGGKEFVRDSIVA
AMLAKNQIFPSLNLLVVPVEMEVANDGKGAKGLAKGFGTSLSYEEQGYVA
APVDEYGWRALMEEEFEAAERQGVVAKSSGKDGIVLLVSKKGKVLRRGVG
IPMWNIIRDDVDPPPDKKKGTK*
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mRNA from alignment at Ecto-sp9_F_contig886:8..3805+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig886.17040.1 ID=mRNA_Ecto-sp9_F_contig886.17040.1|Name=mRNA_Ecto-sp9_F_contig886.17040.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3798bp|location=Sequence derived from alignment at Ecto-sp9_F_contig886:8..3805+ (Ectocarpus species9 EcSCA_722f female)
AGCGTCGCTGCTGCCACGGAGAAGGGAGATGCGGATTCGCAGTCGGATGA AGAAGACGACGAGATAGCGACGCCGGCGTTTAACATTGACAAGCTCAAGG CGGAGACAAAAACTCCGTTCCGCACGGTAAGTGCTGCCGTCGTCTCGGCC AATATTTCCCGGGTCTGCGGCGAAGGCCACTCATCCGCCGATCTCCCCGT CTTTGCAAGGCTGCAAAACCCAACCACGCTACAGCGAGGTTGGATCAGCG TGGTTGAGGTGAAATACTGTTCCGCTGCCCACGCGGTATCTAAAGCTTTT GGATGACACCAAGAGGTTCGCGCTCACTGGTGCCACTTGGTCTCACGCAA CAGGCTAAGCATGTGAAAACGTGTTGCTTCTGTACCTCTCCGTTCCGCAT TTCCCTGTGGACTTGTTTGCATGATTCGCTCTGTTCTCCGCTGCCCCTTC TGTTCCGCACTGCTCTGCTCACTTACACCATCAGGCCATCAGCGTTCGCA CAAAACATTATCCACTCACCTTGGCGCTTACTGATGTGGTGATCCTCTTG CTATCGTGTTTTTGGAGGTGCTGCGCGTCTAAGCTAAATAGTCCCTACCT TCTTGTGTAAATTAGTTTACAGCCATTAATTTGTGCGTGTATCCTGATTC GCTCGCACGGCGGCTACGCGCTGATGTTTTCTCATCCCTCCAAAACAGTT TCGGATCTTCGTCTACGGGGCTTTTGGTCTGTCTGCTCTGATCGGTGGAA TAACTTCGCTCACCCAACTAGCCGCAAGTGAGTCGATGTGTGATAGGCTA GACAAGGGGGTGAACTGCTATTGACCATCCCTGGATATTTATTGCGCTGC TCCAGCAGAGTCAATAGCGGAAGGTCAAAGCTGTCAAAACTTTGTGTCAT TTATTTCGGCTGTGTGCCGTTGTTGGTGGTGCCGCTGCAAAGTTCTTGCT TACTGTTGAAAGCCGCAGTGTATCAGCGGAACAAAACTTCGTACGGGTTA TGTTGTTCTGTACACTTGTTTCGTAGTCCAGCCGTGCCTTAGCGGTAGCC TCTGACCACTCAGATTTCATCTACCCACCATCCTGCTCTTTTGGTCGTGA CTGGGGTTTCGAGCTAACTGTATTTCAAAATTTCCTTCCTTCCAGCACTC TCTGACCAGCCGGGAGCCCTGGAGCTTCAGAAGGTGCTGATCAACCTCCT GGTGGACTTCGGGGTTATGGCCGCGGCTGCATTCTGCTACAATTTCGAAA CGTGAGACATGTCTTTCCTCGTCGCTTGATACTTGGCATCAACTGTTGAA GGCCGTCGTAACGGTAGATGTCGTACGTATAGTTCGCGTCTATTGTACGT TTGGGTCGGTTTCATGAAGGGTGGTTGCCATGTATGATAGCCTACTGGAG TACTCAGCAACTACCAAGAACCCAGAAAATGACAACTCCGGAATAGCAAA TGTTTACCGTACAGAATAAGAGAGAGTGGAGACCAACTCATTCGCGGTTC CTCCAGTAGGTTTGGTAGAGTTCGCCGTTGGAAGGGGGCAGAGCTGCTGC CACACCATGGGATAGCCCGGCGTAACCTCACCCAGAAATGAAGCCCTTCA CATATTTGGTACAATTGTATGTTGGGCGTCAATGTTCGGTCTTGTGAGTC GATGTTCTACTCTAGCCGGTCATCAGTCAGTCGGCCTGGAAGCACTGACA AGCTTGCTTACTCGCATGCATGCATGGACATTTGCGTGACGGCCGCTTTT GGAGGCAGGTCACAGCAGGAAGACCTGGAGCAAGTGGAAGCGGCCAACCG GGAGAAGCGGCAGAAACTAAAGGCCACCAAGATAACCGGTGACGTCAACG CCGACAGAGTGAAACAGCTGCGGGCCCTTAGTGTCAAGGTTCCTGGTAGC GGAAGTGGTGCTGAACTCGAAGGAGCGAAAGAGGTGCGCGAGGTCTTGTG TACATATCTGGGGGTAGGTACTGGACGAGCCAGGCTGCCAGGCCCTCCAA GGCCTGGTTGATGTATGAGCCTGCGATACGGGCCAGTAGTTCATTGTCGA TGGGGTGTGCATCTAAAACCTCGAGGCGATGTGGGACAGAGGATCACAGA CCAGATTATGTGTCTTGTCTTCTTGCTTTCGAGGCGTGGTCAATCGGGGA TACCCCTTTATGTCCAGACAATTTTTGCAATTTTTTGAGTCAACCTCCCC GTCTTCAATAGCACTGTCACGGCCACTCTCAGTTGTTCCATATCTACTCC TCGATGTAACTGAAACACATGCATACACCAACAGGCGCCAGTGGGCGTTC TCATGGACGAGGCGAAGCAAGCATTTTGCGTCTTAGCCGGAGGAAAAGAG TTCGTCCGCGACAGCATCGTGGCCGCGATGCTCGCCAAGAACCAGATTTT CCCCAGCCTCAACCTGTTGGTGGTGCCGGTCGAGATGGAGGTGGCTAACG ATGGCAAGGGGGCCAAAGGACTGGCGAAGGGTTTCGGAACTTCGCTGTCT TACGAGGAGCAGGGTTACGTGGCCGCTCCTGTCGACGTGAGTGTTCGTAA GGAATCAGTTTGCTGCGGATCTGAGCAGAGGACAACTATAACTGGCCGCA GTGTTGCTTGGGACGAATGGCACGCATCCATGCCATCTCCATCCCCCCTG TGCGCGTTGCTCTGCTGCCGAAGCAGTCTCGCTAGCAGGCAATAATTCTC CGCTATCGTGTGCACAGTGAGCAACTGTTGTCTACTTCGACAACCCGCCG GTTCACTGTTTCTTTTGAGGTAAAGGCTCGATGTTCGATCTCGATTCTCT CAAGGTGTCAGGCTCAGCCTGAATTCTTCATTCGATATCGACACCTGCGC GGACTGGACTGCCTAGTATGGAATGATGCTTGGAAGGACGAGTTTGAGTT AGTGCAGCTCGTTGCGGAGACCCTCGCCTCGTGATGAACACGATTCCTGC CTGATGCGTGCCCTTCCGCTTCTGGTGGCGCGCGTGTACAGGAATATGGA TGGCGCGCACTCATGGAAGAGGAGTTCGAGGCAGCAGAGAGACAAGGCGT CGTGGCAAAGTCCTCGGGGAAGGACGGGATTGTGTTGCTAGTAAGCAAGA AGGGGAAGGTGCTGAGGCGGGGGGTGGGCATCCCCATGTGGAACATCATT AGAGACGATGTCGACCCGCCTCCGGACAAGAAGAAAGGCACGAAATAAAG ATATCGATTCGACATCATCGTGTCTAGTTCGCTCACGTCGGCACGTGTTC TTAGAGCAGAGTACCTTGATTGGATCTGGTGTATGGTTGATGGCGGTGGC TCGACCTTTGCCCAGACGTGTGCTATTCGCCTCGTTGTCGTCGTGCTTCC AACAGCATCGCCATCTATCTGCCTCCCGGTAAGAGTGGTCGTTGCCTGTG TGAACTTGAGATAAACCCGGGGTGCGGCGCCGGGAACCGTACCGTACAGT AAATACAGATACAGGGGGTAATAAAGAGCAACGTAGATACGTTCGCCTAT CTGGAGCAGCAGTGACGGGAGCACTGGGTACCCGGCGGCAGCCAGCAAAC CTATGCCTGTGGGCACATGGCGCGGCTCAAGTCCATGTTGGAACTTGGTT CGTCACCTTGTGGAATATTGTAAGTGGCGTCTGTCCGTTGACACTTTGCA GAGGCTCACAAAGCACTTGTTTTGCAGAGCCAAGGATGTTTTGAAAGTGG TGCTTACATAGCCAAGAAAGGTAGTTGAGGGAGAGTCGAAGGACTCGAGC CCGACACTCTGTAGAAAGGAGGTCTTTAGAAAACCGACCAGTGTGAAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig886:8..3805+

>mRNA_Ecto-sp9_F_contig886.17040.1 ID=mRNA_Ecto-sp9_F_contig886.17040.1|Name=mRNA_Ecto-sp9_F_contig886.17040.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1338bp|location=Sequence derived from alignment at Ecto-sp9_F_contig886:8..3805+ (Ectocarpus species9 EcSCA_722f female)
ATGGCCGCGGCTGCATTCTGCTACAATTTCGAAACATGGCCGCGGCTGCA
TTCTGCTACAATTTCGAAACGTCACAGCAGGAAGACCTGGAGCAAGTGGA
AGCGGCCAACCGGGAGAAGCGGCAGAAACTAAAGGCCACCAAGATAACCG
GTGACGTCAACGCCGACAGAGTGAAACAGCTGCGGGCCCTTAGTGTCAAG
GTTCCTGGTAGCGGAAGTGGTGCTGAACTCGAAGGAGCGAAAGAGGTCAC
AGCAGGAAGACCTGGAGCAAGTGGAAGCGGCCAACCGGGAGAAGCGGCAG
AAACTAAAGGCCACCAAGATAACCGGTGACGTCAACGCCGACAGAGTGAA
ACAGCTGCGGGCCCTTAGTGTCAAGGTTCCTGGTAGCGGAAGTGGTGCTG
AACTCGAAGGAGCGAAAGAGGCGCCAGTGGGCGTTCTCATGGACGAGGCG
AAGCAAGCATTTTGCGTCTTAGCCGGAGGAAAAGAGTTCGTCCGCGACAG
CATCGTGGCCGCGATGCTCGCCAAGAACCAGATTTTCCCCAGCCTCAACC
TGTTGGTGGTGCCGGTCGAGATGGAGGTGGCTAACGATGGCAAGGGGGCC
AAAGGACTGGCGAAGGGTTTCGGAACTTCGCTGTCTTACGAGGAGCAGGG
TTACGTGGCCGCTCCTGTCGACGCGCCAGTGGGCGTTCTCATGGACGAGG
CGAAGCAAGCATTTTGCGTCTTAGCCGGAGGAAAAGAGTTCGTCCGCGAC
AGCATCGTGGCCGCGATGCTCGCCAAGAACCAGATTTTCCCCAGCCTCAA
CCTGTTGGTGGTGCCGGTCGAGATGGAGGTGGCTAACGATGGCAAGGGGG
CCAAAGGACTGGCGAAGGGTTTCGGAACTTCGCTGTCTTACGAGGAGCAG
GGTTACGTGGCCGCTCCTGTCGACGAATATGGATGGCGCGCACTCATGGA
AGAGGAGTTCGAGGCAGCAGAGAGACAAGGCGTCGTGGCAAAGTCCTCGG
GGAAGGACGGGATTGTGTTGCTAGTAAGCAAGAAGGGGAAGGTGCTGAGG
CGGGGGGTGGGCATCCCCATGTGGAACATCATTAGAGACGATGTCGACCC
GCCTCCGGACAAGAAGAAAGGCACGAAATAAGAATATGGATGGCGCGCAC
TCATGGAAGAGGAGTTCGAGGCAGCAGAGAGACAAGGCGTCGTGGCAAAG
TCCTCGGGGAAGGACGGGATTGTGTTGCTAGTAAGCAAGAAGGGGAAGGT
GCTGAGGCGGGGGGTGGGCATCCCCATGTGGAACATCATTAGAGACGATG
TCGACCCGCCTCCGGACAAGAAGAAAGGCACGAAATAA
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