mRNA_Ecto-sp9_F_contig885.17032.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig885.17032.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB7_ECTSI) HSP 1 Score: 248 bits (633), Expect = 8.480e-77 Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 3
Query: 171 MLHGGVTPRPASSS-HLHSVRAVGVGALRMADGDGDAMSAAEETAKRLKEQAAALRESAAESEAEIRPVSDKADEVTETPVPAVRPEDMPPKQKLSDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 593
MLHGGVTPRPASSS HLHSVRAVGVGALRMADGDGDAMSAAEETAKRLKEQAAALRESAAESEAEIRP SDKADEVTETPVPAVRPEDMPPKQK+S+DMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY
Sbjct: 1 MLHGGVTPRPASSSSHLHSVRAVGVGALRMADGDGDAMSAAEETAKRLKEQAAALRESAAESEAEIRPASDKADEVTETPVPAVRPEDMPPKQKISNDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 142
BLAST of mRNA_Ecto-sp9_F_contig885.17032.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G0_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 2.010e-13 Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query: 294 ETAKRLKEQAAALRESAAESEAEIRPVSDKADEVTETPVPAVRPEDMPPKQKLSDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 593
E A RLK + A + AE A + E E VP V+ ++ P + +S++M+ +LR+ELISQGADPNR++GNPIL+V IIAVLVI GGQGIFY
Sbjct: 54 EEAARLKAEVAQFEKEKAEKMAAKAAAAPAKQE--EEVVPLVKNQEYKPTE-MSENMKNKLRRELISQGADPNRASGNPILIVGAIIAVLVIAGGQGIFY 150
BLAST of mRNA_Ecto-sp9_F_contig885.17032.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMY3_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 7.570e-13 Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 3
Query: 300 AKRLKEQAAALRESAAESEAEIRPVSDKADEVTETPVPAVRPEDMPPKQK-LSDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 593
A+RL +QAA LRE A E + + KA+ V A E+ K+K LS+ M+ +LR+ELISQGADPNRS+GN IL+VA +I VLV++GGQGIFY
Sbjct: 59 AQRLSDQAAKLREEIAAMEGDRPKPAPKAEPVQ---AKADAEEEAGFKEKELSEAMKAKLRKELISQGADPNRSSGNGILIVAAVIGVLVVLGGQGIFY 154
BLAST of mRNA_Ecto-sp9_F_contig885.17032.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D594_HETAK) HSP 1 Score: 72.8 bits (177), Expect = 1.490e-11 Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query: 294 ETAKRLKEQAAALRESAAESEAEIRPVSDKADEVTETPVPAVRPEDMPPKQKLSDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 593
E AK+L EQAAALR A EAE + A A+ E+ P+ ++S M+++LR+EL +QGA+PN++A NPIL+++G+IAVLVI+ G GIFY
Sbjct: 52 EKAKKLAEQAAALRAEADAMEAEKKASMPAAXXXXXXXXXAM--EEELPRVEISSAMKEKLRRELEAQGANPNKAAANPILIISGVIAVLVILAGGGIFY 149
BLAST of mRNA_Ecto-sp9_F_contig885.17032.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H860_VITBC) HSP 1 Score: 64.3 bits (155), Expect = 1.420e-8 Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 3
Query: 441 KQKLSDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 593
K ++S DM+KRL +EL QGA+PN+S GNP L++ IIA LVI+GG+GIFY
Sbjct: 102 KPEISPDMKKRLLRELEGQGANPNKSRGNPYLIIFVIIAALVILGGKGIFY 152
BLAST of mRNA_Ecto-sp9_F_contig885.17032.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TC08_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.290e-8 Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 3
Query: 429 DMPPKQKLSDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 593
+MPP LSD+M+++L E QGAD N S GNPIL++A +I VLV++GG+G FY
Sbjct: 79 EMPPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133
BLAST of mRNA_Ecto-sp9_F_contig885.17032.1 vs.
Match: Symplekin_C (domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZL2_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 7.720e-6 Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 3
Query: 450 LSDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 593
LSD+M+++L E QGAD N S GNPIL++A +I VLV++GG+G FY
Sbjct: 166 LSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 213 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig885.17032.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig885.17032.1 >prot_Ecto-sp9_F_contig885.17032.1 ID=prot_Ecto-sp9_F_contig885.17032.1|Name=mRNA_Ecto-sp9_F_contig885.17032.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=170bp MLSMNALVASGLLAAFVGQTANAFVSPSMLHGGVTPRPASSSHLHSVRAVback to top mRNA from alignment at Ecto-sp9_F_contig885:7878..12012+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig885.17032.1 ID=mRNA_Ecto-sp9_F_contig885.17032.1|Name=mRNA_Ecto-sp9_F_contig885.17032.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4135bp|location=Sequence derived from alignment at Ecto-sp9_F_contig885:7878..12012+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig885:7878..12012+ >mRNA_Ecto-sp9_F_contig885.17032.1 ID=mRNA_Ecto-sp9_F_contig885.17032.1|Name=mRNA_Ecto-sp9_F_contig885.17032.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp9_F_contig885:7878..12012+ (Ectocarpus species9 EcSCA_722f female)back to top |