mRNA_Ecto-sp9_F_contig8845.17029.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8845.17029.1
Unique NamemRNA_Ecto-sp9_F_contig8845.17029.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8845.17029.1 vs.
Match: Peptidyl-Asp (metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC0_ECTSI)

HSP 1 Score: 354 bits (909), Expect = 1.480e-115
Identity = 189/202 (93.56%), Postives = 190/202 (94.06%), Query Frame = 1 
Query:  388 MVWTGEVVEAGGGFGGIPRSISMSWNDCDIEHFMLRVKTPQHDGTTRVTTTLPCTDPSEPKQVCLLQLVHAAEEESLETLATFEEPEQAHHQGHRRQHVQEYHDEGRDADGNLRRSRSRRHLRKQTSSDDNGGTTGNNYDXXXXRSEGKGQTXXXRRGARRSRKTSEVQRRRLAMEVSEGMEAKRARDPDIDAKDEDVRLLN 993
            MVWTGEVVEAGGGFGGIPRSISMSWNDCDIEHFMLRVKTPQHDGTTRVTTTLPCTDPSEPKQVCLLQLVHAAEEESLETLATFEEPEQAHH+GHRRQH QE HDE R ADGNLRRSRSRRHLRKQTSSDDNGGTTGNNYD    RSEGKGQT    RGARRSRKTSEVQRRRLAMEVSEGMEAKRARDPDIDAKDEDVRLLN
Sbjct:    1 MVWTGEVVEAGGGFGGIPRSISMSWNDCDIEHFMLRVKTPQHDGTTRVTTTLPCTDPSEPKQVCLLQLVHAAEEESLETLATFEEPEQAHHKGHRRQHAQEDHDEARGADGNLRRSRSRRHLRKQTSSDDNGGTTGNNYDGGSSRSEGKGQTSKSWRGARRSRKTSEVQRRRLAMEVSEGMEAKRARDPDIDAKDEDVRLLN 202
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8845.17029.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Peptidyl-Asp1.480e-11593.56metalloendopeptidase n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8845contigEcto-sp9_F_contig8845:135..4505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue1.8e-06
Seed eggNOG ortholog2880.D8LC56
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E79G@1,2SDWE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons6
Model size1002
Cds size1002
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8845.17029.1prot_Ecto-sp9_F_contig8845.17029.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8845 135..4505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.9130237-CDS-Ecto-sp9_F_contig8845:134..5481622930936.9130237-CDS-Ecto-sp9_F_contig8845:134..548Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 135..548 -
1692278957.1021721-CDS-Ecto-sp9_F_contig8845:134..5481692278957.1021721-CDS-Ecto-sp9_F_contig8845:134..548Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 135..548 -
1622930936.9254534-CDS-Ecto-sp9_F_contig8845:1648..17561622930936.9254534-CDS-Ecto-sp9_F_contig8845:1648..1756Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 1649..1756 -
1692278957.1170554-CDS-Ecto-sp9_F_contig8845:1648..17561692278957.1170554-CDS-Ecto-sp9_F_contig8845:1648..1756Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 1649..1756 -
1622930936.9449987-CDS-Ecto-sp9_F_contig8845:2612..27021622930936.9449987-CDS-Ecto-sp9_F_contig8845:2612..2702Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 2613..2702 -
1692278957.1320004-CDS-Ecto-sp9_F_contig8845:2612..27021692278957.1320004-CDS-Ecto-sp9_F_contig8845:2612..2702Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 2613..2702 -
1622930936.9644406-CDS-Ecto-sp9_F_contig8845:2860..29321622930936.9644406-CDS-Ecto-sp9_F_contig8845:2860..2932Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 2861..2932 -
1692278957.1413717-CDS-Ecto-sp9_F_contig8845:2860..29321692278957.1413717-CDS-Ecto-sp9_F_contig8845:2860..2932Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 2861..2932 -
1622930936.9908433-CDS-Ecto-sp9_F_contig8845:3297..33891622930936.9908433-CDS-Ecto-sp9_F_contig8845:3297..3389Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 3298..3389 -
1692278957.1505134-CDS-Ecto-sp9_F_contig8845:3297..33891692278957.1505134-CDS-Ecto-sp9_F_contig8845:3297..3389Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 3298..3389 -
1622930937.0116587-CDS-Ecto-sp9_F_contig8845:4279..45051622930937.0116587-CDS-Ecto-sp9_F_contig8845:4279..4505Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 4280..4505 -
1692278957.160258-CDS-Ecto-sp9_F_contig8845:4279..45051692278957.160258-CDS-Ecto-sp9_F_contig8845:4279..4505Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8845 4280..4505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8845.17029.1

>prot_Ecto-sp9_F_contig8845.17029.1 ID=prot_Ecto-sp9_F_contig8845.17029.1|Name=mRNA_Ecto-sp9_F_contig8845.17029.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=334bp
MILRGYVAGILCLCSVYELGGAVPTLEERAGAGSSKGAPRVGLAALQACT
ASTKDEACTQNSEIIAALVADEYVTVAGFDKGVLNCKSLRQAENAPALRF
NLTNSEEVTAKIKSFRVTSGNAFSDNVNRMVWTGEVVEAGGGFGGIPRSI
SMSWNDCDIEHFMLRVKTPQHDGTTRVTTTLPCTDPSEPKQVCLLQLVHA
AEEESLETLATFEEPEQAHHQGHRRQHVQEYHDEGRDADGNLRRSRSRRH
LRKQTSSDDNGGTTGNNYDGGSSRSEGKGQTSKSRRGARRSRKTSEVQRR
RLAMEVSEGMEAKRARDPDIDAKDEDVRLLNVS*
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mRNA from alignment at Ecto-sp9_F_contig8845:135..4505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8845.17029.1 ID=mRNA_Ecto-sp9_F_contig8845.17029.1|Name=mRNA_Ecto-sp9_F_contig8845.17029.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4371bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8845:135..4505- (Ectocarpus species9 EcSCA_722f female)
ATGATTCTCCGTGGATACGTCGCTGGGATCCTTTGCTTGTGTTCTGTCTA
TGAGTTGGGCGGAGCCGTTCCTACTTTGGAGGAGCGAGCAGGTGCCGGTA
GCAGCAAGGGTGCCCCTCGGGTGGGCTTGGCCGCCCTGCAAGCCTGTACA
GCCAGCACAAAGGATGAGGCCTGTACGCAAAACAGCGAAATAATCGCAGC
ACTCGTCGCCGACGAGTATGTTACTGGTGAGGGAGGATGATTGTCGCAAT
AGGACTGTGAGTTTTCCATATGTCATGTGTATCCAACGATAAATACTGTG
TTTAGGCACAACATCCATACGTGGCCTGCACGGTTATGCGACACACCGGG
ATGGGACAGCGCCTGGGCTGGAGCTCTACGTTCCGCTTTGGTGTGTAGTT
AGGCAGCTTGGAGTATGGGGAGGAACATATCACATGGATGGGCCGTACGT
TCGGTTGAGAGAAGATCGTTGAGTAGGTACCGGGATGGTTGTAAATAGGG
TTGTTGTTGTTGTTGTCTTCGCATTAAACTTGGTTGTAAATGGGGTGACA
CAGAAAAAGATTGAGTTTAGAACTCGCTTCGCCGTGACGAGTGAGAGTCG
AGGGGAAGTTGTCGTCCTCTGTCGTTCTGTTTGTACAGCGTAGTAGGTGT
AATAACACGTGAAACCCCTCTCATTATTATTGCACGACTGCACTTCTCAC
AGGACTTAGCCACATCGAGTACTACTGCAGAAAAGTATCGGACCACTAAA
TTGCTCAATAGGTTGAGAAAGCCATAACGGCTGCGTTGCAATCAGGACCT
GCGCTTCACCTCCCATGGAATGTTGGTACATTCTTCTTGTGTTCTTCTTC
AAGGCTTCAGACTCTCGACTACAGTTCCACCCGGTCCCACATTTATCTCT
TCAGCGGAATCGAATAGCTGTGTGCACAAGTGACGCGCCCCGTTCATGGA
ACCTCGCTTCACTTTACGGCGTTTGACAATAAACCACAATATCAACTACA
GACAACAACGCGGCCTGCGGATACCTCCGGATCTCTCTTTGCCCGCGCGC
TTGTGTTTATCGTTCTTTCCCAATCATTTCCAACATCACCCTGGGTGGTA
CCAATCACCACTGCAGTTGCGGGTTTCGACAAGGGCGTGCTTAATTGCAA
ATCCCTGCGGCAGGCGGAAAATGCTCCCGCGTTGCGGTTCAACCTCACCA
ACTCCGAGGTATGTCCTGGATACGGGCTCGTCGGGGCCAGATACATATCT
CCTTGTTGAGAATCAGAAGTTATTGCCAGTAGACGCGCGAAGGAATCACC
GGGCCGTTACCCCTCGAGCATCTGCTGGCCTTCAATCCCGCGACAGTAAA
TATATAGCACTATGCCCTCCCCTACCCCCCACTTCTTTTGTTCGACCAAA
CCCGTCCACAACAGATCTGGTAACTCTGAAAGGTTTGATGGAACAATCGA
TTTCGGTGCCCCTGCCCCTCTGGTAACGTTTGTAGTATTTATGTTCCCTC
ATCGTCGGGTGTTGACAGCGAGAGCCCTGTTGCTAGTGTTAATCAATGCT
CAAGTTTTGTTCCGGTCAAACAGGAGGTGACCGCCAAGATTAAATCCTTC
AGGGTCACTTCAGGCAACGCCTTCAGCGACAACGTCAACCGCATGGTGAG
AAGGCCGAATGCATGTGGCCGTTGTAATTCATATTGTAGCGTTGTCTCCT
CTGCGCGTGCACGCCCTCAAACTGTGCTCTCTTCGTCCGGGTATGTAGCG
TTTTCCCACTTCCTCTCCACGTGCCGAAATTTGCCGTGCTGTGATGGTCC
TAGGTGTGGACAGGAGAGGTTGTCGAAGCAGGTGGAGGCTTCGGAGGCAT
CCCGAGGTCGATCTCCATGTCCTGGAACGACTGTGATATCGAGGTGGGAC
GGCTAATGTAGTGCTACATCTGATCATCTGATAGCCGTCACGGTAATTCT
ATCTGCACTTTTCTTGCAGTCCAACCGAACTTGTTTGAACGCTCTACAAC
GTCCACCAGCGCGTTGAGAGTTTCTGCATTCCGACGGCGAGGTAGTGTTA
AGTGTTTACGCAAGACAATACTGAATCTTGATCGTTCATCATATTGCGTA
CGAACAACGGCTTGCTGTCATCCTGGGGATGGTGAAAATCTCTTCGCCCT
CTGATGGCACGGGATCGCGCAAGCAACACGGTGACTGACTCAGCCGCCAT
CAAGAAAAACTCTTTCTCTCTCTCGGCTTGCGTGGGATGACCACTTCTGT
TCCTGTACACTTTCCCAGTTTGTACCTGCCGCTTTCGACAAATGATTAGA
TTCTCATGCTGACTGTTACAGAGTTTTTTTTTCCTTTTAATAGATCCAAG
CACCGGCTCGACAGAAGGGAGCACAACTCATTCGCGGTAGAAAATAATCT
GTGCAACGTGGAAAGGAGAGATGATTTTTCAAGTCGGAGATAAGTTACCT
AATCAGAGGATAAACATAGGCATGTGTAGTTAACTCTCGAGACTATTTCT
GTCCTACTGGAGAAATATATGGTCCATCCACAAAGAGCAAAGCAAAAGGA
AGGGGGCACTGTTAGCGAAACAAGAGTACTGAGCACATGGAACATATCAT
CAGGAGCAGCGTGCTCCATCTCGGCAGGGAAGCGTGGACAATTGCCAAGC
AACCCAGGCAAGCAGACATTCGATTACTTCCCATCCGCATCTCCGTGCCC
TCCGCGTCTGTCTCCCTGCGCCTTGTTGTCGTCACAAACAAACACAAAGC
ACTTCATGCTGAGGGTGAAGACTCCGCAGCACGACGGCACGACGCGAGTG
ACGACGACGCTGCCTTGCACGGACCCATCCGAACCCAAACAAGTCTGCCT
TCTCCAGGTGCGAAACTATTGTTAGGAGAGGCCATACTTTTGCTCTACTA
GTGAAACAAACATACGCGTTTTTCATGGAGATGAGAGAAGCGGTGGTACT
TGTGAGGGAGAAGTTGCCGCAGAGGGAGAGCGGACGAACAGTTTCGCGAG
AAGGGTTACACGGAGGAATGGATGGCCTAATGTTTTGTAGTATGAAATAC
AAGAATCGAATAGGCGGCAAAAGTTAAGGGCTTGCTAGTCATGGTGGCTA
CTCCCGCACACGACGCTGCAAGCATGAATTGCTATCGCAACCCGGGCGCC
AAGCCAAGGCCTGGTGTCTCCGAGGGGATCATCCGCCTAACGTGCATTTC
CGTACAAATATCGAATACAATGCAAGGTGGAAACAGTTTGTTTACACCAA
ACATCGCGAGCGACTAGGTCTTCACGTAAACCCCAAGAAATGATCAATTA
TGGAGTCAACCTTTGCGCATCTCTATCCCTCTCAATGGAGCCTACAAGAG
CGTTGAAGGCCACATTCGGTGTTCTGTCTGTTGCGATATGTCGCGGACGA
CATGAGCTAGATGCCGTCTGAGCTAAGAACCTTCAAGTTTTGAGTGGCTG
CGCCTCACACCCAGCCACCCCGCACGAGCTCATGGTAAACAACTTCGAGA
AACTTTCGTATGTACCCCCCCCCCCCCCCCCCGCCAATCTCCGCTTTGCG
AAACGAAGAACGTGGTACATGGGTGTTAAGCGAAGGTTTGGTGCAAAAGT
TACGCTAGGCCTATCTACTCGAGGACAGTAGTCATCCCATGGAGTAAACG
ACAGCTCGCGAGCCTTCGTTCTGAGCGAGAGTGTTTTACACCAATTTTTT
TTTATCTGAAGCGTAGATGCTTACGCCCCACTCTTCGCACACGTTCTTGA
GTATTGCAAGGATCTGGAAAGACTCAAACAGAGCGCTCGCACGCCGCCTC
TCGTTCGCTCGATCCTGTTTACAAACAACACGCGCGCAGGGCGAAACATT
TTGTTTTGATTTCATAACGCGCGTTTTCTCTCCCCTGCAACGATATTCCA
AAATTCCCACGACGTCGACGACGGCCACCACTACTCCATCCCTTGTCCAC
TGTTCAGCTCGTGCACGCGGCGGAGGAAGAATCCCTCGAGACCTTGGCTA
CCTTCGAGGAACCAGAGCAAGCACACCACCAAGGCCATCGCCGCCAACAC
GTCCAAGAATATCATGACGAAGGTCGAGACGCGGATGGAAACCTCCGGCG
CAGTCGAAGCCGCCGCCACCTCCGCAAACAAACCAGCAGCGACGACAATG
GCGGCACCACTGGCAACAACTATGACGGTGGCAGCAGCAGAAGTGAGGGC
AAGGGACAAACATCCAAGTCCCGGCGAGGCGCTAGGCGCAGCAGAAAGAC
GTCCGAGGTGCAACGGCGTCGTCTCGCGATGGAGGTGTCGGAAGGGATGG
AAGCTAAACGCGCGCGCGACCCGGATATTGATGCCAAGGACGAAGACGTT
CGCCTCCTCAACGTGAGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8845:135..4505-

>mRNA_Ecto-sp9_F_contig8845.17029.1 ID=mRNA_Ecto-sp9_F_contig8845.17029.1|Name=mRNA_Ecto-sp9_F_contig8845.17029.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2004bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8845:135..4505- (Ectocarpus species9 EcSCA_722f female)
ATGATTCTCCGTGGATACGTCGCTGGGATCCTTTGCTTGTGTTCTGTCTA
TGAGTTGGGCGGAGCCGTTCCTACTTTGGAGGAGCGAGCAGGTGCCGGTA
GCAGCAAGGGTGCCCCTCGGGTGGGCTTGGCCGCCCTGCAAGCCTGTACA
GCCAGCACAAAGGATGAGGCCTGTACGCAAAACAGCGAAATAATCGCAGC
ACTCGTCGCCGACGAGTATGTTACTGATGATTCTCCGTGGATACGTCGCT
GGGATCCTTTGCTTGTGTTCTGTCTATGAGTTGGGCGGAGCCGTTCCTAC
TTTGGAGGAGCGAGCAGGTGCCGGTAGCAGCAAGGGTGCCCCTCGGGTGG
GCTTGGCCGCCCTGCAAGCCTGTACAGCCAGCACAAAGGATGAGGCCTGT
ACGCAAAACAGCGAAATAATCGCAGCACTCGTCGCCGACGAGTATGTTAC
TGTTGCGGGTTTCGACAAGGGCGTGCTTAATTGCAAATCCCTGCGGCAGG
CGGAAAATGCTCCCGCGTTGCGGTTCAACCTCACCAACTCCGAGTTGCGG
GTTTCGACAAGGGCGTGCTTAATTGCAAATCCCTGCGGCAGGCGGAAAAT
GCTCCCGCGTTGCGGTTCAACCTCACCAACTCCGAGGAGGTGACCGCCAA
GATTAAATCCTTCAGGGTCACTTCAGGCAACGCCTTCAGCGACAACGTCA
ACCGCATGGAGGTGACCGCCAAGATTAAATCCTTCAGGGTCACTTCAGGC
AACGCCTTCAGCGACAACGTCAACCGCATGGTGTGGACAGGAGAGGTTGT
CGAAGCAGGTGGAGGCTTCGGAGGCATCCCGAGGTCGATCTCCATGTCCT
GGAACGACTGTGATATCGAGGTGTGGACAGGAGAGGTTGTCGAAGCAGGT
GGAGGCTTCGGAGGCATCCCGAGGTCGATCTCCATGTCCTGGAACGACTG
TGATATCGAGCACTTCATGCTGAGGGTGAAGACTCCGCAGCACGACGGCA
CGACGCGAGTGACGACGACGCTGCCTTGCACGGACCCATCCGAACCCAAA
CAAGTCTGCCTTCTCCAGCACTTCATGCTGAGGGTGAAGACTCCGCAGCA
CGACGGCACGACGCGAGTGACGACGACGCTGCCTTGCACGGACCCATCCG
AACCCAAACAAGTCTGCCTTCTCCAGCTCGTGCACGCGGCGGAGGAAGAA
TCCCTCGAGACCTTGGCTACCTTCGAGGAACCAGAGCAAGCACACCACCA
AGGCCATCGCCGCCAACACGTCCAAGAATATCATGACGAAGGTCGAGACG
CGGATGGAAACCTCCGGCGCAGTCGAAGCCGCCGCCACCTCCGCAAACAA
ACCAGCAGCGACGACAATGGCGGCACCACTGGCAACAACTATGACGGTGG
CAGCAGCAGAAGTGAGGGCAAGGGACAAACATCCAAGTCCCGGCGAGGCG
CTAGGCGCAGCAGAAAGACGTCCGAGGTGCAACGGCGTCGTCTCGCGATG
GAGGTGTCGGAAGGGATGGAAGCTAAACGCGCGCGCGACCCGGATATTGA
TGCCAAGGACGAAGACGTTCGCCTCCTCAACGTGAGTTGACTCGTGCACG
CGGCGGAGGAAGAATCCCTCGAGACCTTGGCTACCTTCGAGGAACCAGAG
CAAGCACACCACCAAGGCCATCGCCGCCAACACGTCCAAGAATATCATGA
CGAAGGTCGAGACGCGGATGGAAACCTCCGGCGCAGTCGAAGCCGCCGCC
ACCTCCGCAAACAAACCAGCAGCGACGACAATGGCGGCACCACTGGCAAC
AACTATGACGGTGGCAGCAGCAGAAGTGAGGGCAAGGGACAAACATCCAA
GTCCCGGCGAGGCGCTAGGCGCAGCAGAAAGACGTCCGAGGTGCAACGGC
GTCGTCTCGCGATGGAGGTGTCGGAAGGGATGGAAGCTAAACGCGCGCGC
GACCCGGATATTGATGCCAAGGACGAAGACGTTCGCCTCCTCAACGTGAG
TTGA
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