mRNA_Ecto-sp9_F_contig8844.17028.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8844.17028.1
Unique NamemRNA_Ecto-sp9_F_contig8844.17028.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8844.17028.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8844contigEcto-sp9_F_contig8844:904..1384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size481
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8844.17028.1prot_Ecto-sp9_F_contig8844.17028.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8844 918..1382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.7764096-UTR-Ecto-sp9_F_contig8844:903..9171622930936.7764096-UTR-Ecto-sp9_F_contig8844:903..917Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8844 904..917 +
1692278957.069281-UTR-Ecto-sp9_F_contig8844:903..9171692278957.069281-UTR-Ecto-sp9_F_contig8844:903..917Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8844 904..917 +
1622930936.8795865-UTR-Ecto-sp9_F_contig8844:1382..13841622930936.8795865-UTR-Ecto-sp9_F_contig8844:1382..1384Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8844 1383..1384 +
1692278957.0903723-UTR-Ecto-sp9_F_contig8844:1382..13841692278957.0903723-UTR-Ecto-sp9_F_contig8844:1382..1384Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8844 1383..1384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.8674066-CDS-Ecto-sp9_F_contig8844:917..13821622930936.8674066-CDS-Ecto-sp9_F_contig8844:917..1382Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8844 918..1382 +
1692278957.078988-CDS-Ecto-sp9_F_contig8844:917..13821692278957.078988-CDS-Ecto-sp9_F_contig8844:917..1382Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8844 918..1382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8844.17028.1

>prot_Ecto-sp9_F_contig8844.17028.1 ID=prot_Ecto-sp9_F_contig8844.17028.1|Name=mRNA_Ecto-sp9_F_contig8844.17028.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=155bp
MPPQSGEPPPLFQHSYSEAVFLKLLPNGSHYRFVFTGGLSQWTERLTDDI
FTQSLTDPAQHLPQFSSKKYSKCAQPCDLICSQACEPTPLPVVAREDCRP
LPLVYRWFDWHLSQARVHSVSANAPQRDGCRSKHLCIKGRRRSLPSPPFS
SLQT*
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mRNA from alignment at Ecto-sp9_F_contig8844:904..1384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8844.17028.1 ID=mRNA_Ecto-sp9_F_contig8844.17028.1|Name=mRNA_Ecto-sp9_F_contig8844.17028.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=481bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8844:904..1384+ (Ectocarpus species9 EcSCA_722f female)
GGCGGTGTTCCTGAATGCCTCCCCAATCGGGGGAACCACCCCCTCTTTTT
CAACATTCTTATTCTGAGGCTGTCTTCCTGAAACTCCTTCCCAACGGGAG
CCACTACCGATTTGTTTTCACTGGTGGGTTGAGCCAATGGACGGAACGTT
TGACCGATGATATATTCACTCAATCACTCACGGACCCTGCGCAGCACCTA
CCTCAGTTTAGCTCCAAGAAATATTCAAAATGCGCGCAGCCATGCGATCT
TATCTGCTCACAAGCATGCGAACCTACCCCACTCCCTGTTGTAGCGCGTG
AGGATTGTCGCCCTCTTCCATTGGTGTATAGGTGGTTCGACTGGCATCTA
TCCCAAGCTAGGGTGCATTCGGTATCGGCGAATGCGCCCCAGAGAGATGG
TTGTCGATCGAAGCATCTATGCATCAAAGGAAGGAGGCGCTCACTCCCGT
CCCCACCGTTTTCTTCGCTTCAAACCTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8844:904..1384+

>mRNA_Ecto-sp9_F_contig8844.17028.1 ID=mRNA_Ecto-sp9_F_contig8844.17028.1|Name=mRNA_Ecto-sp9_F_contig8844.17028.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8844:904..1384+ (Ectocarpus species9 EcSCA_722f female)
ATGCCTCCCCAATCGGGGGAACCACCCCCTCTTTTTCAACATTCTTATTC
TGAGGCTGTCTTCCTGAAACTCCTTCCCAACGGGAGCCACTACCGATTTG
TTTTCACTGGTGGGTTGAGCCAATGGACGGAACGTTTGACCGATGATATA
TTCACTCAATCACTCACGGACCCTGCGCAGCACCTACCTCAGTTTAGCTC
CAAGAAATATTCAAAATGCGCGCAGCCATGCGATCTTATCTGCTCACAAG
CATGCGAACCTACCCCACTCCCTGTTGTAGCGCGTGAGGATTGTCGCCCT
CTTCCATTGGTGTATAGGTGGTTCGACTGGCATCTATCCCAAGCTAGGGT
GCATTCGGTATCGGCGAATGCGCCCCAGAGAGATGGTTGTCGATCGAAGC
ATCTATGCATCAAAGGAAGGAGGCGCTCACTCCCGTCCCCACCGTTTTCT
TCGCTTCAAACCTGAATGCCTCCCCAATCGGGGGAACCACCCCCTCTTTT
TCAACATTCTTATTCTGAGGCTGTCTTCCTGAAACTCCTTCCCAACGGGA
GCCACTACCGATTTGTTTTCACTGGTGGGTTGAGCCAATGGACGGAACGT
TTGACCGATGATATATTCACTCAATCACTCACGGACCCTGCGCAGCACCT
ACCTCAGTTTAGCTCCAAGAAATATTCAAAATGCGCGCAGCCATGCGATC
TTATCTGCTCACAAGCATGCGAACCTACCCCACTCCCTGTTGTAGCGCGT
GAGGATTGTCGCCCTCTTCCATTGGTGTATAGGTGGTTCGACTGGCATCT
ATCCCAAGCTAGGGTGCATTCGGTATCGGCGAATGCGCCCCAGAGAGATG
GTTGTCGATCGAAGCATCTATGCATCAAAGGAAGGAGGCGCTCACTCCCG
TCCCCACCGTTTTCTTCGCTTCAAACCTGA
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