mRNA_Ecto-sp9_F_contig8842.17026.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8842.17026.1
Unique NamemRNA_Ecto-sp9_F_contig8842.17026.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8842.17026.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 3.990e-44
Identity = 87/107 (81.31%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 CEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSXXXXXXXXXXXXXXXNATSRRGVGRNKTSPVGGRSVRREGSSHSGDADRVSP 321
            CEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASS               NA SRRGVGRNK S VGG SVRREGSS SGDADRVSP
Sbjct:  268 CEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDNPTTSGKGGDGGG-NAASRRGVGRNKPSSVGGSSVRREGSSESGDADRVSP 373
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BLAST of mRNA_Ecto-sp9_F_contig8842.17026.1 vs.
Match: WW (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 2.210e-40
Identity = 82/107 (76.64%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 CEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSXXXXXXXXXXXXXXXNATSRRGVGRNKTSPVGGRSVRREGSSHSGDADRVSP 321
            C DCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASS                A SRRGVGRN  S VGG SVRREGSS SG AD VSP
Sbjct: 1066 CGDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNPSTSGTGGDGGGTAASRRGVGRNNPSSVGGSSVRREGSSQSGGADCVSP 1172
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BLAST of mRNA_Ecto-sp9_F_contig8842.17026.1 vs.
Match: Uncharacterized (protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DAQ6_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 1.400e-5
Identity = 24/46 (52.17%), Postives = 28/46 (60.87%), Query Frame = 1 
Query:    1 CEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFF 138
            C  CGRTFAP RL  H   C      RR+ +DP+ MRARGT LE +
Sbjct:  377 CGACGRTFAPDRLAKHESVCARPAARRRKVFDPRVMRARGTELEAY 422
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8842.17026.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.990e-4481.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
WW2.210e-4076.64domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.400e-552.17protein n=2 Tax=Synchytrium endobioticum TaxID=286... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8842contigEcto-sp9_F_contig8842:2786..4546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size325
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8842.17026.1prot_Ecto-sp9_F_contig8842.17026.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8842 2786..4544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.596217-CDS-Ecto-sp9_F_contig8842:2785..28391622930936.596217-CDS-Ecto-sp9_F_contig8842:2785..2839Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 2786..2839 +
1692278956.9784963-CDS-Ecto-sp9_F_contig8842:2785..28391692278956.9784963-CDS-Ecto-sp9_F_contig8842:2785..2839Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 2786..2839 +
1622930936.6146345-CDS-Ecto-sp9_F_contig8842:3555..36521622930936.6146345-CDS-Ecto-sp9_F_contig8842:3555..3652Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 3556..3652 +
1692278956.989075-CDS-Ecto-sp9_F_contig8842:3555..36521692278956.989075-CDS-Ecto-sp9_F_contig8842:3555..3652Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 3556..3652 +
1622930936.6294863-CDS-Ecto-sp9_F_contig8842:4374..45441622930936.6294863-CDS-Ecto-sp9_F_contig8842:4374..4544Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 4375..4544 +
1692278957.0002627-CDS-Ecto-sp9_F_contig8842:4374..45441692278957.0002627-CDS-Ecto-sp9_F_contig8842:4374..4544Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 4375..4544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8842.17026.1

>prot_Ecto-sp9_F_contig8842.17026.1 ID=prot_Ecto-sp9_F_contig8842.17026.1|Name=mRNA_Ecto-sp9_F_contig8842.17026.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=107bp
CEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPI
GAASSDDNPSTSSKGGDGGGNATSRRGVGRNKTSPVGGRSVRREGSSHSG
DADRVSP
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mRNA from alignment at Ecto-sp9_F_contig8842:2786..4546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8842.17026.1 ID=mRNA_Ecto-sp9_F_contig8842.17026.1|Name=mRNA_Ecto-sp9_F_contig8842.17026.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1761bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8842:2786..4546+ (Ectocarpus species9 EcSCA_722f female)
TGCGAGGACTGCGGGCGGACCTTCGCCCCCGGGAGGCTTCGATCGCACGC
CAAGGTGAGTGAGAGAACCTCTTGCTGCTGCTGGTGCTGCTGGTGCTGCT
GCTGTAGCGCCCCATGGGTGGGTGTTATTCGTAACTAGCATCGACCGCGC
TAACCGGATGTAGTAGCGGGATAAAAAATGCGAACACGCTTTCTATTCAA
ACGCTTTTACCGACCTGTGTGGTTGTGTCTTTATTATTGGCATCGACCGC
GCTAACCGGCTGACCAATGAAAATACGTCAGTCTCAGTGCTGTTAAAAAC
ACAAAATACTTGTAAATGTCATGAACTGGGACCCCGTGAGGGGGCGGCAT
GGGGGAGGCTAAGCTATTCTCCGGATTACAGACAGAGACGGTAGCACGTG
TCTTACCGGTGTGTGTGTGTGTGTGCGTCCCAACCAACCAAGCCTTTGGG
TAGTTGGTCGTGTTAGGTTAGCAAGGGATCAAAATGGGCTCTTCGGAGGG
AGGAACAAAAAAGGGTTGTTTACTACCTCGCTCCAACCTGCAAGTGTGGT
GCTGGTGTTGCAGGATTTGGCACGATCGAACGGATGAACTAAGTAACTCC
TTACGCGCGAGTTGAACAATCTCACGAACAAAACAACACAACAAACTTGG
AAAGGTGTTCATTTTTTTTTTTTCAGCGCTGGCAGTGAGAAGTAGTTCTG
AGAGAGGTCATTGGAATTTTTTTGCTTCGCCGCTTTTTTTTTTCCCCCAC
TTTGGATTTCTGCGGTGCAGGCATGCCGAAGTGTGTTCTTGGAGCGCCGC
CGCCCGTACGACCCGAAGGCAATGCGGGCGAGGGGGACACCGCTCGAGTT
CTTCCAGCAGCCCATCGGTGAGTGGTGCTCCGCATGCCCGAACAAGCGGA
CATGGAACATTCCGTGTGCCTGCAGGCGGTGTTGAGCAGTGGTGGTGGCG
GTTCGGTGGGTGTTCCGTATGCCGGACATGGGAATACGGAACGTTCCGCG
TGCTGTTGTCGGTGTAGTCGTAGCTGGTGGTGGAAGTTCGGTGGGTAATC
CGTATGCCGGGCAAGGGAGTATGGAACGTTCCGTGTACTGCTGTTGGTAC
TCCAGAGTGTATCAGTAGTTGTAGTCGCGGTTGGCGCTGTTGGTGTCAGT
GGTGGCGATAAGTGGTGTTGTTGTTATAGTTGTTCTTGTCCAGGCTACAT
GTGCCTCGCAAGCTGAAACTGTTGTGGTGGTGTTACGACGAACATTTTAC
CGGGACAGATGGATGTCCTCATTGATTCTCGTCGTCGTCGTCGGTGCTGC
TCGTTGTTGGCTCCGTCTTCTTCTGATTCCGTTTCATCCACCACTAGCTC
CTAAGAGCCGAAACTATGACGCCGGCCGGTACAGCAGTGCTCGTTCGCCG
ATGGAACCATCACGCCACCAACGACAACAAACGATGACACGATGACACCC
ACCTCTTTTCAGGGATTTAGTCTACGGAGCTCCCGCTACCAAGCCCCCTC
GAAACGTCTTACTCTTCACCAAATTCGAACATCCTTACCCCGATATCCCC
TGCGCCCCTTCCCCGACACACCAACTTCCGGCGCTACAGGCGCGGCGAGC
TCCGACGACAACCCTTCCACGTCAAGCAAGGGGGGAGACGGCGGCGGCAA
CGCGACATCGAGAAGGGGGGTTGGCAGAAACAAGACGTCCCCCGTCGGAG
GGAGGTCCGTGAGGCGGGAGGGGTCCTCTCATAGCGGGGACGCGGACCGC
GTGTCTCCGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8842:2786..4546+

>mRNA_Ecto-sp9_F_contig8842.17026.1 ID=mRNA_Ecto-sp9_F_contig8842.17026.1|Name=mRNA_Ecto-sp9_F_contig8842.17026.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8842:2786..4546+ (Ectocarpus species9 EcSCA_722f female)
TGCGAGGACTGCGGGCGGACCTTCGCCCCCGGGAGGCTTCGATCGCACGC
CAAGTGCGAGGACTGCGGGCGGACCTTCGCCCCCGGGAGGCTTCGATCGC
ACGCCAAGGCATGCCGAAGTGTGTTCTTGGAGCGCCGCCGCCCGTACGAC
CCGAAGGCAATGCGGGCGAGGGGGACACCGCTCGAGTTCTTCCAGCAGCC
CATCGGCATGCCGAAGTGTGTTCTTGGAGCGCCGCCGCCCGTACGACCCG
AAGGCAATGCGGGCGAGGGGGACACCGCTCGAGTTCTTCCAGCAGCCCAT
CGGCGCGGCGAGCTCCGACGACAACCCTTCCACGTCAAGCAAGGGGGGAG
ACGGCGGCGGCAACGCGACATCGAGAAGGGGGGTTGGCAGAAACAAGACG
TCCCCCGTCGGAGGGAGGTCCGTGAGGCGGGAGGGGTCCTCTCATAGCGG
GGACGCGGACCGCGTGTCTCCGGCGCGGCGAGCTCCGACGACAACCCTTC
CACGTCAAGCAAGGGGGGAGACGGCGGCGGCAACGCGACATCGAGAAGGG
GGGTTGGCAGAAACAAGACGTCCCCCGTCGGAGGGAGGTCCGTGAGGCGG
GAGGGGTCCTCTCATAGCGGGGACGCGGACCGCGTGTCTCCG
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