mRNA_Ecto-sp9_F_contig8842.17025.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8842.17025.1
Unique NamemRNA_Ecto-sp9_F_contig8842.17025.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8842.17025.1 vs.
Match: WW (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 1.820e-70
Identity = 124/130 (95.38%), Postives = 125/130 (96.15%), Query Frame = 1 
Query:    1 VRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIRAVSVEHQMHTNSATNIHGKGASSLNDGSFQDSSTLLQHALPPFVSKESGPENVLAPAVASGNSELGGVVATG 390
            VRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIRAVSVEHQMHT SATN HGKGASSLN GSFQDSSTLLQHALPPFVSK +GPENVLAPAVAS NSELGGVVATG
Sbjct:  906 VRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIRAVSVEHQMHT-SATNTHGKGASSLNGGSFQDSSTLLQHALPPFVSKGNGPENVLAPAVASENSELGGVVATG 1034
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BLAST of mRNA_Ecto-sp9_F_contig8842.17025.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 6.710e-67
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 1 
Query:    1 VRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIRAVSVEHQMHTNSATNIHGKGASSLNDGSFQDSSTLLQHALPPFVSKESGPENVLAPAVASGNSELGGVVATG 390
            VRRQLFSEDSEARPLVFCPFCGEGVVRA GLRDHLQECYVLDRCRGSETHKQVEVAI+AVSVE+QMHT SATN HG+ ASSLNDGSFQDSSTLLQHAL PFVSK + PENVLAPAVAS NSELG VVATG
Sbjct:  108 VRRQLFSEDSEARPLVFCPFCGEGVVRARGLRDHLQECYVLDRCRGSETHKQVEVAIKAVSVENQMHT-SATNTHGRRASSLNDGSFQDSSTLLQHALSPFVSKGNDPENVLAPAVASENSELGRVVATG 236
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8842.17025.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
WW1.820e-7095.38domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized6.710e-6790.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8842contigEcto-sp9_F_contig8842:392..2670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size393
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8842.17025.1prot_Ecto-sp9_F_contig8842.17025.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8842 392..2668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.462178-CDS-Ecto-sp9_F_contig8842:391..4991622930936.462178-CDS-Ecto-sp9_F_contig8842:391..499Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 392..499 +
1692278956.9369578-CDS-Ecto-sp9_F_contig8842:391..4991692278956.9369578-CDS-Ecto-sp9_F_contig8842:391..499Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 392..499 +
1622930936.477261-CDS-Ecto-sp9_F_contig8842:1176..12241622930936.477261-CDS-Ecto-sp9_F_contig8842:1176..1224Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 1177..1224 +
1692278956.9469435-CDS-Ecto-sp9_F_contig8842:1176..12241692278956.9469435-CDS-Ecto-sp9_F_contig8842:1176..1224Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 1177..1224 +
1622930936.4912417-CDS-Ecto-sp9_F_contig8842:1891..19671622930936.4912417-CDS-Ecto-sp9_F_contig8842:1891..1967Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 1892..1967 +
1692278956.9572287-CDS-Ecto-sp9_F_contig8842:1891..19671692278956.9572287-CDS-Ecto-sp9_F_contig8842:1891..1967Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 1892..1967 +
1622930936.5136533-CDS-Ecto-sp9_F_contig8842:2510..26681622930936.5136533-CDS-Ecto-sp9_F_contig8842:2510..2668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 2511..2668 +
1692278956.9675436-CDS-Ecto-sp9_F_contig8842:2510..26681692278956.9675436-CDS-Ecto-sp9_F_contig8842:2510..2668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8842 2511..2668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8842.17025.1

>prot_Ecto-sp9_F_contig8842.17025.1 ID=prot_Ecto-sp9_F_contig8842.17025.1|Name=mRNA_Ecto-sp9_F_contig8842.17025.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=130bp
VRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETH
KQVEVAIRAVSVEHQMHTNSATNIHGKGASSLNDGSFQDSSTLLQHALPP
FVSKESGPENVLAPAVASGNSELGGVVATG
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mRNA from alignment at Ecto-sp9_F_contig8842:392..2670+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8842.17025.1 ID=mRNA_Ecto-sp9_F_contig8842.17025.1|Name=mRNA_Ecto-sp9_F_contig8842.17025.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2279bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8842:392..2670+ (Ectocarpus species9 EcSCA_722f female)
GTTCGACGGCAGCTGTTCAGCGAAGACTCCGAGGCCCGGCCCTTGGTGTT
CTGCCCCTTTTGCGGCGAAGGCGTTGTCCGTGCGGGGGGATTGCGAGACC
ATCTGCAGGTACATACGTACATACCGTATATGGGGTGAAGTAAGATATCA
CACCCCCTGGATCGATTCTTAAAGCTCATCGATTGCTCCATCACGAAAAG
GAGGCACTCTAAGTAAACTTAACCAAACGGTGTGTTTTGAGAAGGCTGTC
GACGAGACGGTTCCAACGCCGCCATTTTCGGCACGGCCACTCTTTTCTGC
TGTGGAGTAATCGAGCTTTGAAAATTGTTACGGGGATTGCGGGGTAATCT
TCAGGTACAACTTATGCCATGTATCTAACCCTGTTTTCGTTCGTGTGTGT
TTTTCCTTCCCAGCGGTTCATAGCCGCTGGTTTGTAGTGATTTATGTCGC
GGGATTCGGTGAAGATGTTATGGCAATACCAAGGGATTGAGAACCCGCAA
GAATTTATCGTCTAGAGCTTCGTTGCTATTTGCCGTGTTAGGATAGGGAT
GATTCGAATTTGATCAGGAATTATGCCAAACAAGTGTCCCAGGCTCAGGG
TAGAGTTCCACAGCAAGAAGACACGTTTCTTTTTACAAAAAAACAATTAT
CGTCCTCTCATTTGCTGTTTCGCGTGACTCGACCCGGCATCCACATTCGT
GCTTAGTACATAAACATGGCCTGTTTTTTTTTGCTTTTTTTCCAACTCAT
ATTTGTTTAATTGTTCATCCGTCCGTTACGGTCAGGAGTGCTACGTGCTC
GATCGATGCCGTGGGAGCGAGACACACAAGCAGGTAAGGTAACGTACATT
TCATTTTCAGCAAACAAGGACCGAACTATTATAGCCCTAACTGCCTTCTT
ACATTTTGCATGCCTACCGTCTACCGTTGGCACGTCCCCTTTCGAACTCC
CCTCACGACGATACGACTATCGATGCTCGTCTTAAACAGTGGTAATTGTC
GATAATTCCAGCAATCGATGCCTTCCTTCGTGGTCTTTGTCGATGGTTGT
CATAAATGGTGGCGATCGCCGATGCTTTTGCCTGACTTAGTGGCAATAAT
TCGTGGCAAAAAAATGCCTGTTGTTCGTGGTAAAATTATCGATTACTGTC
TTGGCGGAGTAGCAAAAGAAAACGGGAACGCTTTTCCTGAAATCGGAGCA
CCATGTCTTCGGTTGAATATCTCGTTCGGTCGTGGCAAAGGCAGGGAGGG
GGGTGTTGGTTCTCTTTGGCCCTCCACTGCTGTTGTCTCTCCACTGCTGT
TGTAGCCACCAAAGGTGCCCTCGCTCTGTGCTTCAGGAAGCAACCTTAAG
CACGTCTAAATGTGTGACCACGCACATGTCCGTATGTTTGCATGCCTGTT
CTTCTGTGGTGGTATAGGCTGAACGTTTGCAAAGACAATGTACACGAACT
CAAACGCTCCTTTTCATCCGTCCCGTCAATCGTTTGTGTGTGTTGTCCAG
GTAGAAGTGGCCATCAGAGCCGTCTCGGTGGAGCACCAGATGCACACAAA
TAGCGCTACCAACATTCACGGCAAAGGTAACCATACCCACCTCTTTGTCG
TGATCGTTGTAATGTTTGGGGGGGGGGGGTACGTGGTTGTGTCTCGCTGT
CGGCGGTGTTGGCCTGGCGGTGATCTTACGACCCTCCAAAATTTTGTAGC
ACTGCTTCAATTCAAGCCCGCCTGCACGAGCGGAAGACAGACCCAGCGTC
TAGTTCAGTATTAGCCCGGGAGGTTTAAGAAGGTTTGAACAGCAATGGGC
TACGGGAAGTAGGCATCAAGGCTGGTATAAAGAGCAGAGAGAAATGTGAC
CCCTGTTCCCTCCCCTCCTTCCCCCCTCCTGGCATCCAAAACCCGGCAAA
CTCCGTCCGTCTTTGTTTCCTGTATTTATGGTAGAGATCGGAGCCTACTG
TTTTGATGACAAACATTACACCAAGCACATGCCGAACCAGAGAATGATCC
CTCCCTTCCGCCCCACCCAGCTCATTGACGGTCATCTTACTCTCCCCCTC
TTCCCCCCCCCCGCCCAGCTCAATGACTGCCATCTTACTCCCCCCCCCCT
CTCCCGCAATTCAACTAAGGCGCATCTTCGCTGAACGACGGTTCATTCCA
AGACTCGTCTACACTCCTGCAGCACGCTCTTCCTCCCTTCGTCTCGAAAG
AGAGCGGTCCGGAGAACGTTCTCGCACCAGCAGTCGCCTCGGGAAATTCC
GAGCTCGGAGGCGTTGTTGCTACTGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8842:392..2670+

>mRNA_Ecto-sp9_F_contig8842.17025.1 ID=mRNA_Ecto-sp9_F_contig8842.17025.1|Name=mRNA_Ecto-sp9_F_contig8842.17025.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8842:392..2670+ (Ectocarpus species9 EcSCA_722f female)
GTTCGACGGCAGCTGTTCAGCGAAGACTCCGAGGCCCGGCCCTTGGTGTT
CTGCCCCTTTTGCGGCGAAGGCGTTGTCCGTGCGGGGGGATTGCGAGACC
ATCTGCAGGTTCGACGGCAGCTGTTCAGCGAAGACTCCGAGGCCCGGCCC
TTGGTGTTCTGCCCCTTTTGCGGCGAAGGCGTTGTCCGTGCGGGGGGATT
GCGAGACCATCTGCAGGAGTGCTACGTGCTCGATCGATGCCGTGGGAGCG
AGACACACAAGCAGGAGTGCTACGTGCTCGATCGATGCCGTGGGAGCGAG
ACACACAAGCAGGTAGAAGTGGCCATCAGAGCCGTCTCGGTGGAGCACCA
GATGCACACAAATAGCGCTACCAACATTCACGGCAAAGGTAGAAGTGGCC
ATCAGAGCCGTCTCGGTGGAGCACCAGATGCACACAAATAGCGCTACCAA
CATTCACGGCAAAGGCGCATCTTCGCTGAACGACGGTTCATTCCAAGACT
CGTCTACACTCCTGCAGCACGCTCTTCCTCCCTTCGTCTCGAAAGAGAGC
GGTCCGGAGAACGTTCTCGCACCAGCAGTCGCCTCGGGAAATTCCGAGCT
CGGAGGCGTTGTTGCTACTGGGGCGCATCTTCGCTGAACGACGGTTCATT
CCAAGACTCGTCTACACTCCTGCAGCACGCTCTTCCTCCCTTCGTCTCGA
AAGAGAGCGGTCCGGAGAACGTTCTCGCACCAGCAGTCGCCTCGGGAAAT
TCCGAGCTCGGAGGCGTTGTTGCTACTGGG
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