mRNA_Ecto-sp9_F_contig884.17018.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: Elicitor-inducible (LRR receptor-like protein EILP (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM94_ECTSI) HSP 1 Score: 157 bits (397), Expect = 9.250e-48 Identity = 70/75 (93.33%), Postives = 71/75 (94.67%), Query Frame = 1
Query: 1 MDSPTEPILATFAPSAAPPVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENWG 225
MDSPTEPI+ TFAPS APPVST PDCEDPVGAFNQCGGAGYEGS CCRTGYDCVEMADCYSECRPRGDRCSENWG
Sbjct: 1 MDSPTEPIVGTFAPSVAPPVSTHPDCEDPVGAFNQCGGAGYEGSACCRTGYDCVEMADCYSECRPRGDRCSENWG 75
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI) HSP 1 Score: 144 bits (363), Expect = 7.450e-38 Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 1
Query: 1 MDSPTEPILATFAPSAAPPVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENWG 225
M SPTE I+ATFAPS PPVSTDPDCEDPVG FNQCGG GYEGSTCCRTGYDC +MADCY ECRPRGDRCSE+WG
Sbjct: 623 MASPTEAIVATFAPSVPPPVSTDPDCEDPVGGFNQCGGPGYEGSTCCRTGYDCEQMADCYFECRPRGDRCSESWG 697
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: EsV-1-166 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI) HSP 1 Score: 136 bits (343), Expect = 1.420e-35 Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 1 MDSPTEPILATFAPSAAPPVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENWG 225
MDSPTEPI+ATFAPS PP+S DCEDPVGAFNQCGG GY+GSTCCR GY+C EMA+CYSECRP+ DRCSE WG
Sbjct: 430 MDSPTEPIVATFAPSVPPPISDHSDCEDPVGAFNQCGGEGYDGSTCCRAGYECEEMAECYSECRPKDDRCSEGWG 504
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: EsV-1-166 (n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI) HSP 1 Score: 118 bits (296), Expect = 4.970e-29 Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1
Query: 55 PVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENWG 225
PVSTDPDCEDPVGAF QCGGAGY+GSTCCR GY+C +MADCYSECRPRGDRCSE WG
Sbjct: 423 PVSTDPDCEDPVGAFAQCGGAGYDGSTCCRAGYECEKMADCYSECRPRGDRCSEGWG 479
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI) HSP 1 Score: 112 bits (281), Expect = 2.420e-27 Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1
Query: 55 PVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENWG 225
PVSTDPDCEDPV AF QCGGAGY+GSTCC GY+C EMADCYSECRPRGD CSE+WG
Sbjct: 312 PVSTDPDCEDPVDAFAQCGGAGYDGSTCCTAGYECEEMADCYSECRPRGDGCSESWG 368
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: CBM1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 5.610e-22 Identity = 51/84 (60.71%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 1 MDSPTEPILATFAPSAAPPVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSE---------CRPRGDRCSENWG 225
MDSPTEPI+ATFAPS PPVSTDPDCEDPVGA GY+C EMADCYS+ CRPRGDRCSE WG
Sbjct: 377 MDSPTEPIVATFAPSVPPPVSTDPDCEDPVGA----------------AGYECEEMADCYSDVQRRQLVESCRPRGDRCSEGWG 444
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 2.460e-16 Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 55 PVSTDP--DCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENW 222
P T+P DC DPVG ++QCGG YEGS CCR GY+C EMA CYS+CRP CSE+W
Sbjct: 286 PAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDW 343
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 1.010e-11 Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 28 ATFAPSAAPPVSTDPDCEDPVGAFNQCGGA-GYEGSTCCRTGYDCVEMADCYSECRPRG----DRCSENWG 225
+T PS AP T C+DP + QCGG Y+G TCC +CVE+ADCYSECRP D CS WG
Sbjct: 420 STPVPSVAPASPTATSCDDPAEVYEQCGGDDSYDGRTCCVENSECVELADCYSECRPAETTPEDNCSGEWG 490
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P0_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 4.230e-9 Identity = 27/33 (81.82%), Postives = 27/33 (81.82%), Query Frame = 1
Query: 91 GAFNQCGGAGYEGSTCCRTGYDCVEMADCYSEC 189
G GGA YEGSTCCRTGYDCVEMADCYSEC
Sbjct: 190 GDLRAVGGAEYEGSTCCRTGYDCVEMADCYSEC 222
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 6.920e-6 Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query: 82 DPVGAFNQCGGAGYEGSTCCRTGYDCVEM--ADCYSECRP 195
DPV A+ QCGG G+ GSTCC G +CV M + CYS+CRP
Sbjct: 1153 DPVEAWEQCGGDGWTGSTCCEEGLECVVMGKSTCYSQCRP 1192 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig884.17018.1 >prot_Ecto-sp9_F_contig884.17018.1 ID=prot_Ecto-sp9_F_contig884.17018.1|Name=mRNA_Ecto-sp9_F_contig884.17018.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=112bp MDSPTEPILATFAPSAAPPVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGback to top mRNA from alignment at Ecto-sp9_F_contig884:3266..3823- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig884.17018.1 ID=mRNA_Ecto-sp9_F_contig884.17018.1|Name=mRNA_Ecto-sp9_F_contig884.17018.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig884:3266..3823- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig884:3266..3823- >mRNA_Ecto-sp9_F_contig884.17018.1 ID=mRNA_Ecto-sp9_F_contig884.17018.1|Name=mRNA_Ecto-sp9_F_contig884.17018.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig884:3266..3823- (Ectocarpus species9 EcSCA_722f female)back to top |