mRNA_Ecto-sp9_F_contig884.17018.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig884.17018.1
Unique NamemRNA_Ecto-sp9_F_contig884.17018.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: Elicitor-inducible (LRR receptor-like protein EILP (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM94_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.250e-48
Identity = 70/75 (93.33%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    1 MDSPTEPILATFAPSAAPPVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENWG 225
            MDSPTEPI+ TFAPS APPVST PDCEDPVGAFNQCGGAGYEGS CCRTGYDCVEMADCYSECRPRGDRCSENWG
Sbjct:    1 MDSPTEPIVGTFAPSVAPPVSTHPDCEDPVGAFNQCGGAGYEGSACCRTGYDCVEMADCYSECRPRGDRCSENWG 75          
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 7.450e-38
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 1
Query:    1 MDSPTEPILATFAPSAAPPVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENWG 225
            M SPTE I+ATFAPS  PPVSTDPDCEDPVG FNQCGG GYEGSTCCRTGYDC +MADCY ECRPRGDRCSE+WG
Sbjct:  623 MASPTEAIVATFAPSVPPPVSTDPDCEDPVGGFNQCGGPGYEGSTCCRTGYDCEQMADCYFECRPRGDRCSESWG 697          
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: EsV-1-166 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.420e-35
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 MDSPTEPILATFAPSAAPPVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENWG 225
            MDSPTEPI+ATFAPS  PP+S   DCEDPVGAFNQCGG GY+GSTCCR GY+C EMA+CYSECRP+ DRCSE WG
Sbjct:  430 MDSPTEPIVATFAPSVPPPISDHSDCEDPVGAFNQCGGEGYDGSTCCRAGYECEEMAECYSECRPKDDRCSEGWG 504          
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: EsV-1-166 (n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 4.970e-29
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1
Query:   55 PVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENWG 225
            PVSTDPDCEDPVGAF QCGGAGY+GSTCCR GY+C +MADCYSECRPRGDRCSE WG
Sbjct:  423 PVSTDPDCEDPVGAFAQCGGAGYDGSTCCRAGYECEKMADCYSECRPRGDRCSEGWG 479          
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.420e-27
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1
Query:   55 PVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENWG 225
            PVSTDPDCEDPV AF QCGGAGY+GSTCC  GY+C EMADCYSECRPRGD CSE+WG
Sbjct:  312 PVSTDPDCEDPVDAFAQCGGAGYDGSTCCTAGYECEEMADCYSECRPRGDGCSESWG 368          
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: CBM1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.610e-22
Identity = 51/84 (60.71%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 MDSPTEPILATFAPSAAPPVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSE---------CRPRGDRCSENWG 225
            MDSPTEPI+ATFAPS  PPVSTDPDCEDPVGA                 GY+C EMADCYS+         CRPRGDRCSE WG
Sbjct:  377 MDSPTEPIVATFAPSVPPPVSTDPDCEDPVGA----------------AGYECEEMADCYSDVQRRQLVESCRPRGDRCSEGWG 444          
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.460e-16
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   55 PVSTDP--DCEDPVGAFNQCGGAGYEGSTCCRTGYDCVEMADCYSECRPRGDRCSENW 222
            P  T+P  DC DPVG ++QCGG  YEGS CCR GY+C EMA CYS+CRP    CSE+W
Sbjct:  286 PAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDW 343          
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.010e-11
Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   28 ATFAPSAAPPVSTDPDCEDPVGAFNQCGGA-GYEGSTCCRTGYDCVEMADCYSECRPRG----DRCSENWG 225
            +T  PS AP   T   C+DP   + QCGG   Y+G TCC    +CVE+ADCYSECRP      D CS  WG
Sbjct:  420 STPVPSVAPASPTATSCDDPAEVYEQCGGDDSYDGRTCCVENSECVELADCYSECRPAETTPEDNCSGEWG 490          
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.230e-9
Identity = 27/33 (81.82%), Postives = 27/33 (81.82%), Query Frame = 1
Query:   91 GAFNQCGGAGYEGSTCCRTGYDCVEMADCYSEC 189
            G     GGA YEGSTCCRTGYDCVEMADCYSEC
Sbjct:  190 GDLRAVGGAEYEGSTCCRTGYDCVEMADCYSEC 222          
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.920e-6
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:   82 DPVGAFNQCGGAGYEGSTCCRTGYDCVEM--ADCYSECRP 195
            DPV A+ QCGG G+ GSTCC  G +CV M  + CYS+CRP
Sbjct: 1153 DPVEAWEQCGGDGWTGSTCCEEGLECVVMGKSTCYSQCRP 1192          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig884.17018.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
Elicitor-inducible9.250e-4893.33LRR receptor-like protein EILP (ISS) n=1 Tax=Ectoc... [more]
EsV-1-1667.450e-3885.33n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
EsV-1-1661.420e-3578.67n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI[more]
EsV-1-1664.970e-2987.72n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
EsV-1-1662.420e-2784.21n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
CBM15.610e-2260.71domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
EsV-1-1662.460e-1662.07n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized1.010e-1149.30protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Uncharacterized4.230e-981.82protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.920e-660.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig884contigEcto-sp9_F_contig884:3266..3823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue3.1e-32
Seed eggNOG ortholog2880.D8LM92
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.7381248-CDS-Ecto-sp9_F_contig884:3265..34151622930935.7381248-CDS-Ecto-sp9_F_contig884:3265..3415Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig884 3266..3415 -
1692278956.5585349-CDS-Ecto-sp9_F_contig884:3265..34151692278956.5585349-CDS-Ecto-sp9_F_contig884:3265..3415Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig884 3266..3415 -
1622930935.7553773-CDS-Ecto-sp9_F_contig884:3637..38231622930935.7553773-CDS-Ecto-sp9_F_contig884:3637..3823Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig884 3638..3823 -
1692278956.5683389-CDS-Ecto-sp9_F_contig884:3637..38231692278956.5683389-CDS-Ecto-sp9_F_contig884:3637..3823Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig884 3638..3823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig884.17018.1prot_Ecto-sp9_F_contig884.17018.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig884 3266..3823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig884.17018.1

>prot_Ecto-sp9_F_contig884.17018.1 ID=prot_Ecto-sp9_F_contig884.17018.1|Name=mRNA_Ecto-sp9_F_contig884.17018.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=112bp
MDSPTEPILATFAPSAAPPVSTDPDCEDPVGAFNQCGGAGYEGSTCCRTG
YDCVEMADCYSECRPRGDRCSENWGQCGGLHWEGPECCWPGARCAERTEW
YHQCIPEDAAA*
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mRNA from alignment at Ecto-sp9_F_contig884:3266..3823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig884.17018.1 ID=mRNA_Ecto-sp9_F_contig884.17018.1|Name=mRNA_Ecto-sp9_F_contig884.17018.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig884:3266..3823- (Ectocarpus species9 EcSCA_722f female)
ATGGACTCTCCGACCGAGCCGATCTTGGCGACCTTCGCGCCGTCGGCGGC CCCCCCTGTCTCGACCGACCCCGACTGCGAGGACCCCGTCGGTGCGTTCA ACCAGTGCGGGGGAGCGGGGTACGAGGGATCCACCTGCTGCAGGACCGGC TACGACTGCGTGGAGATGGCGGACTGCTACTCCGAGGTAAATATCACCAC GTCTACCTCGTACTTGTTTTAGCTTGTCGGCGATGTGCACTACGACCGCA CTCCTTGAGTCCCCCTCCGTTATTGGGGAGTCTTCCCCCTGAGTGCGCCC TCTGCTATTGCTGCCGCCCATTTTTTTGCATTTCTCGCGTTCTCTGGCCG ACCATACCACCCCGCCCTCTCCTCCTTGGCGCGTGTTTTTTTTCTACGTT GATTCCAGTGCCGTCCCCGCGGCGACCGCTGCTCTGAGAACTGGGGGCAG TGCGGAGGGCTGCACTGGGAAGGCCCCGAGTGCTGCTGGCCCGGCGCCCG TTGCGCCGAGCGCACCGAGTGGTACCACCAGTGTATTCCCGAGGATGCCG CCGCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig884:3266..3823-

>mRNA_Ecto-sp9_F_contig884.17018.1 ID=mRNA_Ecto-sp9_F_contig884.17018.1|Name=mRNA_Ecto-sp9_F_contig884.17018.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig884:3266..3823- (Ectocarpus species9 EcSCA_722f female)
ATGGACTCTCCGACCGAGCCGATCTTGGCGACCTTCGCGCCGTCGGCGGC
CCCCCCTGTCTCGACCGACCCCGACTGCGAGGACCCCGTCGGTGCGTTCA
ACCAGTGCGGGGGAGCGGGGTACGAGGGATCCACCTGCTGCAGGACCGGC
TACGACTGCGTGGAGATGGCGGACTGCTACTCCGAGATGGACTCTCCGAC
CGAGCCGATCTTGGCGACCTTCGCGCCGTCGGCGGCCCCCCCTGTCTCGA
CCGACCCCGACTGCGAGGACCCCGTCGGTGCGTTCAACCAGTGCGGGGGA
GCGGGGTACGAGGGATCCACCTGCTGCAGGACCGGCTACGACTGCGTGGA
GATGGCGGACTGCTACTCCGAGTGCCGTCCCCGCGGCGACCGCTGCTCTG
AGAACTGGGGGCAGTGCGGAGGGCTGCACTGGGAAGGCCCCGAGTGCTGC
TGGCCCGGCGCCCGTTGCGCCGAGCGCACCGAGTGGTACCACCAGTGTAT
TCCCGAGGATGCCGCCGCCTGATGCCGTCCCCGCGGCGACCGCTGCTCTG
AGAACTGGGGGCAGTGCGGAGGGCTGCACTGGGAAGGCCCCGAGTGCTGC
TGGCCCGGCGCCCGTTGCGCCGAGCGCACCGAGTGGTACCACCAGTGTAT
TCCCGAGGATGCCGCCGCCTGA
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