mRNA_Ecto-sp9_F_contig8838.17017.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8838.17017.1
Unique NamemRNA_Ecto-sp9_F_contig8838.17017.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8838.17017.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8838contigEcto-sp9_F_contig8838:2795..3306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size480
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.6787117-UTR-Ecto-sp9_F_contig8838:2794..28261622930935.6787117-UTR-Ecto-sp9_F_contig8838:2794..2826Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8838 2795..2826 +
1692278956.540217-UTR-Ecto-sp9_F_contig8838:2794..28261692278956.540217-UTR-Ecto-sp9_F_contig8838:2794..2826Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8838 2795..2826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.695364-CDS-Ecto-sp9_F_contig8838:2826..33061622930935.695364-CDS-Ecto-sp9_F_contig8838:2826..3306Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8838 2827..3306 +
1692278956.5492547-CDS-Ecto-sp9_F_contig8838:2826..33061692278956.5492547-CDS-Ecto-sp9_F_contig8838:2826..3306Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8838 2827..3306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8838.17017.1prot_Ecto-sp9_F_contig8838.17017.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8838 2827..3306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8838.17017.1

>prot_Ecto-sp9_F_contig8838.17017.1 ID=prot_Ecto-sp9_F_contig8838.17017.1|Name=mRNA_Ecto-sp9_F_contig8838.17017.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=160bp
MSGFGGREPGFTSAKFYFQQKWKILGEGSRGPPTTHSRRWLLKSRIQQGL
PTVQQYSAQIVLSKVSCCSKVLRSDRSWNNSRCTTGNNTSLYARPPHRVT
THNLDKLHREEPPDIQHLSDTTASLLAFPTHPFHSLRFSSDHGSFTCRSS
APTLSAPDSL
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mRNA from alignment at Ecto-sp9_F_contig8838:2795..3306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8838.17017.1 ID=mRNA_Ecto-sp9_F_contig8838.17017.1|Name=mRNA_Ecto-sp9_F_contig8838.17017.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=512bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8838:2795..3306+ (Ectocarpus species9 EcSCA_722f female)
GTCCCCTCTTTCCACATTGGCATAGCGATCAGATGTCTGGTTTTGGTGGA
AGAGAACCCGGGTTCACATCCGCCAAATTTTATTTCCAACAAAAATGGAA
AATATTGGGAGAGGGGAGCCGAGGACCTCCCACTACCCATTCCCGCAGGT
GGCTTTTGAAGAGTCGCATCCAGCAGGGTTTGCCTACTGTTCAACAATAC
TCCGCTCAGATCGTTCTCAGCAAGGTTTCCTGCTGTTCAAAGGTACTCCG
CTCAGATCGTTCTTGGAACAATAGTAGGTGCACCACCGGTAATAACACCT
CTCTCTACGCCCGTCCTCCACACCGGGTAACTACACACAATTTGGATAAA
CTACATCGTGAAGAACCTCCTGACATTCAGCACCTCTCGGACACGACAGC
TTCCTTGCTTGCTTTTCCCACCCACCCCTTCCACTCGCTCCGTTTCTCTT
CCGATCATGGTTCGTTCACTTGTCGTTCTTCTGCCCCTACCCTGTCCGCA
CCCGACTCCCTC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8838:2795..3306+

>mRNA_Ecto-sp9_F_contig8838.17017.1 ID=mRNA_Ecto-sp9_F_contig8838.17017.1|Name=mRNA_Ecto-sp9_F_contig8838.17017.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=960bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8838:2795..3306+ (Ectocarpus species9 EcSCA_722f female)
ATGTCTGGTTTTGGTGGAAGAGAACCCGGGTTCACATCCGCCAAATTTTA
TTTCCAACAAAAATGGAAAATATTGGGAGAGGGGAGCCGAGGACCTCCCA
CTACCCATTCCCGCAGGTGGCTTTTGAAGAGTCGCATCCAGCAGGGTTTG
CCTACTGTTCAACAATACTCCGCTCAGATCGTTCTCAGCAAGGTTTCCTG
CTGTTCAAAGGTACTCCGCTCAGATCGTTCTTGGAACAATAGTAGGTGCA
CCACCGGTAATAACACCTCTCTCTACGCCCGTCCTCCACACCGGGTAACT
ACACACAATTTGGATAAACTACATCGTGAAGAACCTCCTGACATTCAGCA
CCTCTCGGACACGACAGCTTCCTTGCTTGCTTTTCCCACCCACCCCTTCC
ACTCGCTCCGTTTCTCTTCCGATCATGGTTCGTTCACTTGTCGTTCTTCT
GCCCCTACCCTGTCCGCACCCGACTCCCTCATGTCTGGTTTTGGTGGAAG
AGAACCCGGGTTCACATCCGCCAAATTTTATTTCCAACAAAAATGGAAAA
TATTGGGAGAGGGGAGCCGAGGACCTCCCACTACCCATTCCCGCAGGTGG
CTTTTGAAGAGTCGCATCCAGCAGGGTTTGCCTACTGTTCAACAATACTC
CGCTCAGATCGTTCTCAGCAAGGTTTCCTGCTGTTCAAAGGTACTCCGCT
CAGATCGTTCTTGGAACAATAGTAGGTGCACCACCGGTAATAACACCTCT
CTCTACGCCCGTCCTCCACACCGGGTAACTACACACAATTTGGATAAACT
ACATCGTGAAGAACCTCCTGACATTCAGCACCTCTCGGACACGACAGCTT
CCTTGCTTGCTTTTCCCACCCACCCCTTCCACTCGCTCCGTTTCTCTTCC
GATCATGGTTCGTTCACTTGTCGTTCTTCTGCCCCTACCCTGTCCGCACC
CGACTCCCTC
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