mRNA_Ecto-sp9_F_contig8836.17016.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8836.17016.1
Unique NamemRNA_Ecto-sp9_F_contig8836.17016.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8836.17016.1 vs.
Match: Foie-gras_1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX28_ECTSI)

HSP 1 Score: 674 bits (1740), Expect = 1.880e-228
Identity = 369/416 (88.70%), Postives = 375/416 (90.14%), Query Frame = 1 
Query:    1 RKVSALLSDMVPRDGGRFQGGRGDADRGPLGGAFLRGGADPMEQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRRGGW--VPYRHHAWLSRQYLVFGEMLGAHMSQIAKSTARGGGWAGGGALGYTSPGHYYLGAALQAVRRRKTADRLLRGIDKDKLLASLEGLEVREPLYLGESVRLVDPTNAERNLRQECRGFLDLEETKTDRVGVARSLLVKALEHCPSGEDGFRRRRVLILGHLGEESFVAGRYDDALERLPPVWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMALRLSSNALRPWVPLEESKRLLAEALPLVGALEAPSEAVQSDRGFVASVPPEGPASE 1242
            ++VSALLSDMVPRDGGRFQGGRGDADRG LGGAFLRGGADPMEQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAAAXXXXXXXXXXXXXXX                                    GW  VPYRHHAWLSRQYLVFGEMLGAHMSQIA+STARGGGWAGGGALGYTSPGHYYLGAALQAVRRRKTADRLLRGIDKD LLASLEGLEVREPLYLGESVRLVDPTNAERNLRQECRGFLDLEETKTDRVG+ARSLLVKALEHCPSGE+GFRRRRVLILGHLGEESFVAGRYDDALERLPPVWKTYLADGWLKLAT ALRRVYVCAWRSGKARTVAD+ALRLSSNALRPWVPLEESKRLLAEALPLVGALEAPSEAVQSDRGFVASVPPEGPASE
Sbjct:  309 QEVSALLSDMVPRDGGRFQGGRGDADRGTLGGAFLRGGADPMEQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAAAXXXXXXXXXXXXXXX-------------------------------XXXXSGWRVVPYRHHAWLSRQYLVFGEMLGAHMSQIAQSTARGGGWAGGGALGYTSPGHYYLGAALQAVRRRKTADRLLRGIDKDNLLASLEGLEVREPLYLGESVRLVDPTNAERNLRQECRGFLDLEETKTDRVGMARSLLVKALEHCPSGEEGFRRRRVLILGHLGEESFVAGRYDDALERLPPVWKTYLADGWLKLATVALRRVYVCAWRSGKARTVADVALRLSSNALRPWVPLEESKRLLAEALPLVGALEAPSEAVQSDRGFVASVPPEGPASE 693
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BLAST of mRNA_Ecto-sp9_F_contig8836.17016.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z5_9PHAE)

HSP 1 Score: 337 bits (864), Expect = 9.990e-104
Identity = 180/225 (80.00%), Postives = 185/225 (82.22%), Query Frame = 1 
Query:  643 IDKDKLLASLEGLEVREPLYLGESVRLVDPTNAERNLRQECRGFLDLEETKTDRVGVARSLLVKALEHCPSGEDGFRRRRVLILGHLGEESFVAGR---------------------------------YDDALERLPPVWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMALRLSSNALRPWVPLEESKRLLAEALPLVGALEAPSEAVQSDRGFVASV 1218
            IDKD+LL+SLEGLEVREPLYLGESVRLVDPTNAE     ECRGFLDLEE+KTDRVG+ARSLLVKALEHCPSGEDGFRRRRVLILGHLGEESFVAGR                                 YDDALERLP VWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMALRLSS ALRPWVPLEESKRLLAEALPLVGALEAPSEAVQSDRGFVAS+
Sbjct:   12 IDKDRLLSSLEGLEVREPLYLGESVRLVDPTNAE-----ECRGFLDLEESKTDRVGMARSLLVKALEHCPSGEDGFRRRRVLILGHLGEESFVAGRQDGMGRNEMGWGXXXXXXXKGGGVGWEWGGVGGYDDALERLPLVWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMALRLSSKALRPWVPLEESKRLLAEALPLVGALEAPSEAVQSDRGFVASL 231
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BLAST of mRNA_Ecto-sp9_F_contig8836.17016.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA98_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.690e-42
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    1 RKVSALLSDMVPRDGGRFQGGRGDADRGPLGGAFLRGGADPMEQIRGVAEVVHLRLVRNHLHRNMSVEGAIRQLRRHVSAFGRPGDAAA 267
            ++VSALLSDMVPRD GRFQGGRGDAD G LGGAFLRGGADPMEQIRGVAEVVHLRLVRNHLHR+MSVEGAIRQLRRHVSAFGRPGDAAA
Sbjct:  309 QEVSALLSDMVPRDEGRFQGGRGDADGGTLGGAFLRGGADPMEQIRGVAEVVHLRLVRNHLHRSMSVEGAIRQLRRHVSAFGRPGDAAA 397
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BLAST of mRNA_Ecto-sp9_F_contig8836.17016.1 vs.
Match: Foie-gras_1 (domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MV90_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 1.280e-10
Identity = 72/268 (26.87%), Postives = 118/268 (44.03%), Query Frame = 1 
Query:  427 VPYRHHAWLSRQYLVFGEMLGAHMSQIAKSTARGGGWAGGGALGYTSPGHYYLGAALQAVRRRKTADRLLRGIDKD------------KLLASLEGLEVREPLYLGESVRLVDPTNAERNLRQECRGFLDLEETKT-DRVGVARSLLV-----------KALEHCPSGEDGFRRRRVLILGHL-GEESFVAGRYDDALERLPPVWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMALRLSSNALRPWVPLEESKRLLAEALPL 1155
            + Y+H AWLSRQYLVFG+ML    +QI  +      W     L    P  YY  AA  A++R+K A  + + I               K  +S+EG++  +  Y+G++    D  + E+ L       L+ EE K  D + + R +LV           KA +H  S       R  L  G L G+E F + +Y+ A +    +   Y  + W  L    L    +C+ R        + +++L +  +   +P+EE K++L + + L
Sbjct:  388 IEYQHWAWLSRQYLVFGQML---ENQIQYN------WQNTNTLSLQHPAFYYQIAAKYAIQRKKVALEIGQNIRNSESFEKISNSREIKPTSSIEGMDYSKQEYVGQT----DDHHREKFLFVLSPQVLEKEEKKEIDFIDICREMLVSHSSEILDLLHKAYDHYKSKSS----RMALYTGALIGQERFASEKYEVAKKWFDRIAANYRGEMWWSLLANTLNYSLLCSLRLNLPGDFVNYSMQLLAPNMP--IPIEEKKKILGDFISL 636
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BLAST of mRNA_Ecto-sp9_F_contig8836.17016.1 vs.
Match: Foie-gras_1 (domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6GZX4_9HEMI)

HSP 1 Score: 70.5 bits (171), Expect = 2.570e-9
Identity = 76/270 (28.15%), Postives = 119/270 (44.07%), Query Frame = 1 
Query:  433 YRHHAWLSRQYLVFGEMLGAHMSQIAKSTARGGGWAGGGALGYTSPGHYYLGAALQAVRRRKTADRLLRGIDK---DKLLASLEGLEV--REPLYLGE-SVRLVDPTNAERNLRQECRGFLDLEETKTDRVG---VARSLLVKALEH-----CPSGEDGFRRRRVLILGHLGEESFVAGRYDDALERLPPVWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMALRLSSNALRPWVPLEESKRLLAEALPLV-GALEAPSEAVQSD 1197
            ++HHAWL++QY +FGE+         +   RGG  A    +    PG+YY  AA  A  R+  +  L +G+D+   +  LA  + LE   + P   G  S +  DPT       +E  GF+ L+  +   +    +  SLL  A+       CP      R RR L +  + +E + +  Y  AL  L  +   Y A+ W  L ++ LR+   CA+ +   R   D+ L  S++      P E+  RL    L +V G    P E  + D
Sbjct:  315 FQHHAWLAKQYCLFGELF--------EEAIRGGLPA----VQTMHPGYYYELAARHAADRKAASLLLCQGVDRYPANDPLAGWDSLEFYGQRPWRAGNLSAQPPDPT-------REMEGFVALQYNERHHINHSAIIISLLGNAITQYKNYRCP------RMRRHLAI-QMADEYYCSKDYGKALTLLTHMLWDYRAERWDSLISSLLRKALSCAYLTASVREYIDLNLEASAH-----FPTEQLDRLFDNLLSIVQGCSPEPEEEEKQD 553
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BLAST of mRNA_Ecto-sp9_F_contig8836.17016.1 vs.
Match: Uncharacterized (protein n=2 Tax=Proconiini TaxID=565685 RepID=A0A1B6GRB4_9HEMI)

HSP 1 Score: 70.5 bits (171), Expect = 2.860e-9
Identity = 76/270 (28.15%), Postives = 119/270 (44.07%), Query Frame = 1 
Query:  433 YRHHAWLSRQYLVFGEMLGAHMSQIAKSTARGGGWAGGGALGYTSPGHYYLGAALQAVRRRKTADRLLRGIDK---DKLLASLEGLEV--REPLYLGE-SVRLVDPTNAERNLRQECRGFLDLEETKTDRVG---VARSLLVKALEH-----CPSGEDGFRRRRVLILGHLGEESFVAGRYDDALERLPPVWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMALRLSSNALRPWVPLEESKRLLAEALPLV-GALEAPSEAVQSD 1197
            ++HHAWL++QY +FGE+         +   RGG  A    +    PG+YY  AA  A  R+  +  L +G+D+   +  LA  + LE   + P   G  S +  DPT       +E  GF+ L+  +   +    +  SLL  A+       CP      R RR L +  + +E + +  Y  AL  L  +   Y A+ W  L ++ LR+   CA+ +   R   D+ L  S++      P E+  RL    L +V G    P E  + D
Sbjct:  315 FQHHAWLAKQYCLFGELF--------EEAIRGGLPA----VQTMHPGYYYELAARHAADRKAASLLLCQGVDRYPANDPLAGWDSLEFYGQRPWRAGNLSAQPPDPT-------REMEGFVALQYNERHHINHSAIIISLLGNAITQYKNYRCP------RMRRHLAI-QMADEYYCSKDYGKALTLLTHMLWDYRAERWDSLISSLLRKALSCAYLTASVREYIDLNLEASAH-----FPTEQLDRLFDNLLSIVQGCSPEPEEEEKQD 553
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BLAST of mRNA_Ecto-sp9_F_contig8836.17016.1 vs.
Match: Foie-gras_1 (domain-containing protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6JB51_9HEMI)

HSP 1 Score: 67.8 bits (164), Expect = 1.600e-8
Identity = 73/275 (26.55%), Postives = 122/275 (44.36%), Query Frame = 1 
Query:  433 YRHHAWLSRQYLVFGEMLGAHMSQIAKSTARGGGWAGGGALGYTSPGHYYLGAALQAVRRRKTADRLLRGIDK---DKLLASLEGLEV--REPLYLGE-SVRLVDPTNAERNLRQECRGFLDLEETKTDRVG---VARSLLVKALEH-----CPSGEDGFRRRRVLILGHLGEESFVAGRYDDALERLPPVWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMALRLSSNALRPWVPLEESKRLLAEALPLVGALEAPSEAVQSDRGFVAS 1215
            ++HHAWL++QY +FGE+         +   RGG  A    +    PG+YY  AA  A  R+  +  L +G+++   +  LA L+ LE   + P   G  S +  DP        +E  GF+ L+  +   +    +  SLL  A+       CP      R RR L +  + +E + +  Y  AL  L  +   Y A+ W  L ++ L +   CA+ +   R   D++L  S+     + P E  +RL    L ++    +P   V+ D+   A+
Sbjct:  249 FQHHAWLAKQYCLFGELF--------EEAIRGGLPA----VQTMHPGYYYELAARHAADRKAASLVLCQGVERYPANDPLAGLDSLEFYGQRPWRAGNLSAQPPDPI-------REMEGFVALQYNERHHINHSAIIISLLGNAITQYKNYRCP------RMRRHLAI-QMADEYYSSKDYGKALTLLTHMLWDYRAERWDSLISSLLTKALSCAYLTASVREYIDLSLEASA-----YFPTERQERLFDNLLSVIQGC-SPEPDVEEDQDVTAA 491
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BLAST of mRNA_Ecto-sp9_F_contig8836.17016.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KQC9_9HEMI)

HSP 1 Score: 67.0 bits (162), Expect = 3.620e-8
Identity = 73/265 (27.55%), Postives = 114/265 (43.02%), Query Frame = 1 
Query:  433 YRHHAWLSRQYLVFGEMLGAHMSQIAKSTARGGGWAGGGALGYTSPGHYYLGAALQAVRRRKTADRLLRGIDKDKLLASLEGLEVRE-----PLYLGE-SVRLVDPTNAERNLRQECRGFLDL---EETKTDRVGVARSLLVKALEH-----CPSGEDGFRRRRVLILGHLGEESFVAGRYDDALERLPPVWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMALRLSSNALRPWVPLEESKRLLAEALPLV-GALEAPSE 1182
            ++HHAWL++QY +FGE+         +   RGG  A    +    PG+YY  AA  A  R+  +  L +G+D+      L G +  E     P   G  S +  DP+       +E  GF+ L   E  +T+   +  SLL  A+       CP      R RR L +  + +E + +  Y  AL  L  +   Y A+ W  L  + LR+   CA+ +   +   D++L  S++      P E   R+    L +V G    P E
Sbjct:  315 FQHHAWLAKQYCLFGELF--------EEAIRGGLPA----VQTMHPGYYYELAARHAADRKAASLLLCQGVDRYPANDPLAGWDTLEFYGQRPWRAGNLSAQPPDPS-------REMEGFVALQYNERHRTNHSAIIISLLGNAITQYKNYRCP------RMRRHLAI-QMADEYYSSKDYGKALTLLTHMLWDYRAERWDSLIASLLRKALSCAYLTASMKEYLDLSLEASAH-----FPTERRGRVFDNLLAIVQGGSPVPEE 548
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BLAST of mRNA_Ecto-sp9_F_contig8836.17016.1 vs.
Match: Uncharacterized (protein n=4 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AN04_PHOPY)

HSP 1 Score: 56.6 bits (135), Expect = 7.020e-5
Identity = 61/239 (25.52%), Postives = 96/239 (40.17%), Query Frame = 1 
Query:  427 VPYRHHAWLSRQYLVFGEML--GAHMSQIAKSTARGGGWAGGGALGYTSPGHYYLGAALQAVRRRKTADRLLRGIDKDKLLASLEGLEVREPLYLGESVRLVDPTNAERNLRQECRGFLDLE--ETKTDRVGVARSLLVKALEHCPSGEDGFRRRRVLILGHLGEESFVAGRYDDALERLPPVWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMALRLSSNALRPWVPLEESKR 1131
            + + HHAWLS+Q+ VFG++      +   A  T                PG YY  AA  A+ R+K+   L + I        LE L+  E  Y   S R    T    +   E RG   L+  ET+ +      SL   A+    +     R RR L++  + EE + +G Y  +L     +   Y  + W  L T  L +   CA+ +   +    ++L L    + P   +  +KR
Sbjct:  317 LAFEHHAWLSKQFSVFGDIFDEAVKLGLPAVQTQH--------------PGLYYQQAAQYAIARKKSCHELCQNITSYPTPDPLENLKNIE-FYGQRSWRPGKLTAEPPDPHLESRGIQALQFLETQINHSNNIISLFGFAISQYKTYRC-LRMRRYLVV-QMAEEYYNSGDYGKSLTLFTHMLWDYRTENWWNLLTDILHKALQCAYLTASIQDYVSLSLEL----IGPSTKISTNKR 534
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8836.17016.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Foie-gras_11.880e-22888.70domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized9.990e-10480.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.690e-4293.26protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Foie-gras_11.280e-1026.87domain-containing protein n=1 Tax=Planoprotosteliu... [more]
Foie-gras_12.570e-928.15domain-containing protein (Fragment) n=1 Tax=Cuern... [more]
Uncharacterized2.860e-928.15protein n=2 Tax=Proconiini TaxID=565685 RepID=A0A1... [more]
Foie-gras_11.600e-826.55domain-containing protein (Fragment) n=1 Tax=Homal... [more]
Uncharacterized3.620e-827.55protein (Fragment) n=1 Tax=Graphocephala atropunct... [more]
Uncharacterized7.020e-525.52protein n=4 Tax=Photinus pyralis TaxID=7054 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8836contigEcto-sp9_F_contig8836:374..5736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score663.3
Seed ortholog evalue7.2e-188
Seed eggNOG ortholog2880.D7FX28
KEGG koko:K02575,ko:K20308
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
EggNOG free text desc.regulation of protein complex stability
EggNOG OGsKOG4386@1,KOG4386@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko04131
Hectar predicted targeting categoryother localisation
Exons7
Model size1242
Cds size1215
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8836.17016.1prot_Ecto-sp9_F_contig8836.17016.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8836 401..5736 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.453141-UTR-Ecto-sp9_F_contig8836:373..4001622930935.453141-UTR-Ecto-sp9_F_contig8836:373..400Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8836 374..400 +
1692278956.4445937-UTR-Ecto-sp9_F_contig8836:373..4001692278956.4445937-UTR-Ecto-sp9_F_contig8836:373..400Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8836 374..400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.4766316-CDS-Ecto-sp9_F_contig8836:400..5051622930935.4766316-CDS-Ecto-sp9_F_contig8836:400..505Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 401..505 +
1692278956.4593341-CDS-Ecto-sp9_F_contig8836:400..5051692278956.4593341-CDS-Ecto-sp9_F_contig8836:400..505Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 401..505 +
1622930935.4951148-CDS-Ecto-sp9_F_contig8836:969..13171622930935.4951148-CDS-Ecto-sp9_F_contig8836:969..1317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 970..1317 +
1692278956.4768097-CDS-Ecto-sp9_F_contig8836:969..13171692278956.4768097-CDS-Ecto-sp9_F_contig8836:969..1317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 970..1317 +
1622930935.51471-CDS-Ecto-sp9_F_contig8836:2210..23721622930935.51471-CDS-Ecto-sp9_F_contig8836:2210..2372Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 2211..2372 +
1692278956.4880412-CDS-Ecto-sp9_F_contig8836:2210..23721692278956.4880412-CDS-Ecto-sp9_F_contig8836:2210..2372Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 2211..2372 +
1622930935.53322-CDS-Ecto-sp9_F_contig8836:3057..31591622930935.53322-CDS-Ecto-sp9_F_contig8836:3057..3159Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 3058..3159 +
1692278956.5036454-CDS-Ecto-sp9_F_contig8836:3057..31591692278956.5036454-CDS-Ecto-sp9_F_contig8836:3057..3159Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 3058..3159 +
1622930935.5699728-CDS-Ecto-sp9_F_contig8836:3889..40741622930935.5699728-CDS-Ecto-sp9_F_contig8836:3889..4074Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 3890..4074 +
1692278956.5128694-CDS-Ecto-sp9_F_contig8836:3889..40741692278956.5128694-CDS-Ecto-sp9_F_contig8836:3889..4074Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 3890..4074 +
1622930935.587252-CDS-Ecto-sp9_F_contig8836:4547..46681622930935.587252-CDS-Ecto-sp9_F_contig8836:4547..4668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 4548..4668 +
1692278956.522023-CDS-Ecto-sp9_F_contig8836:4547..46681692278956.522023-CDS-Ecto-sp9_F_contig8836:4547..4668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 4548..4668 +
1622930935.6045375-CDS-Ecto-sp9_F_contig8836:5544..57361622930935.6045375-CDS-Ecto-sp9_F_contig8836:5544..5736Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 5545..5736 +
1692278956.5309737-CDS-Ecto-sp9_F_contig8836:5544..57361692278956.5309737-CDS-Ecto-sp9_F_contig8836:5544..5736Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8836 5545..5736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8836.17016.1

>prot_Ecto-sp9_F_contig8836.17016.1 ID=prot_Ecto-sp9_F_contig8836.17016.1|Name=mRNA_Ecto-sp9_F_contig8836.17016.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=405bp
MVPRDGGRFQGGRGDADRGPLGGAFLRGGADPMEQIRGVAEVVHLRLVRN
HLHRNMSVEGAIRQLRRHVSAFGRPGDAAASAAASSRAGKGSPSSTSSAG
GGGGEAAGKPGGGGGGGGGWGGGVGGVRRRGGWVPYRHHAWLSRQYLVFG
EMLGAHMSQIAKSTARGGGWAGGGALGYTSPGHYYLGAALQAVRRRKTAD
RLLRGIDKDKLLASLEGLEVREPLYLGESVRLVDPTNAERNLRQECRGFL
DLEETKTDRVGVARSLLVKALEHCPSGEDGFRRRRVLILGHLGEESFVAG
RYDDALERLPPVWKTYLADGWLKLATAALRRVYVCAWRSGKARTVADMAL
RLSSNALRPWVPLEESKRLLAEALPLVGALEAPSEAVQSDRGFVASVPPE
GPASE
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mRNA from alignment at Ecto-sp9_F_contig8836:374..5736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8836.17016.1 ID=mRNA_Ecto-sp9_F_contig8836.17016.1|Name=mRNA_Ecto-sp9_F_contig8836.17016.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5363bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8836:374..5736+ (Ectocarpus species9 EcSCA_722f female)
CGAAAGGTGTCGGCTCTTCTGAGCGACATGGTGCCGCGGGACGGGGGACG
GTTTCAGGGTGGAAGGGGCGACGCAGATAGAGGACCGCTGGGGGGGGCAT
TCCTTCGTGGGGGAGCGGACCCGATGGAGCAGGTGAGACTGACTAGAGGG
AAGATTCGATGTTGCGCGATTGATCTATTGTTGATGTTCTGTTTTAGTGT
TTTCGCTGTGAAGCTGTAGTACCTGGTGTGCGGTAGGCACGTGTTGCTGA
TATTGGCGTCCCGAATCACAGCGTTTCTTTCTTGACACGTCTTTTTCGCT
GTCTCTCGAATTTTTCTTCTTCTTGCCTCACCTTTGCGGGCGTGCTTCAA
GTGTTCGTGTTTTCCTCCCCTCCGTTCGACCAGCTTGACACCAAGAGACG
AAGCGGGCCAGAAGTCCCTGGTTGAGATGTGTCCTCCCTTTGCCGAAGCT
GTCTTTGGCACATAATACTTGTTTCATTGACACGATGACGAGTTTCCTCT
ATGGCAATATCTTTGTTCTTGTTAATTCGTTTTTCTCAACCACACACGAC
GACAACGACGGCGAACAACAACAACAACAACAACGACAACAACTAGATCC
GAGGAGTGGCGGAAGTGGTCCACCTCCGGCTGGTGCGGAACCACCTGCAC
CGCAACATGAGCGTCGAGGGGGCCATCCGACAGCTCCGGCGGCACGTGTC
CGCATTCGGCAGACCCGGTGATGCTGCGGCCTCCGCCGCTGCTTCTTCCC
GTGCCGGAAAAGGCTCGCCTTCGTCTACGTCTTCGGCTGGTGGGGGGGGG
GGGGAGGCGGCGGGGAAGCCAGGGGGAGGGGGGGGGGGGGGGGGGGGGTG
GGGGGGGGGGGTGGGGGGGGTGAGGAGGAGGGGGGGGTGGGTGCCTTACC
GTCACCACGCGTGGCTGTCGCGGCAGTACCTTGTGTTCGGAGAGGTGAGA
GGATGTGTATCGAAGATAGAGAAGATAGAGCTGTTGGATGTAGGTATTCG
GTTGGTTGGCGGCGTACTACCCAGCAGCAGCGTAGCGATTTTTGGGGCGG
ATACCAGATGGAGTGATATTTGGTAGTTGTTAGGGTTGCTTGGCATGTTG
GCGGGATCAAGAGCCGAGGACAGTTTATCTGTTCAAAGAGAAGCTCAGAA
GATGGGGGGCGTGGGGTTGGGAGATGTCCAGGTCGCGTTTTGTTCACCCT
TTTGACGTATGTTTGCTGTTTCTCGCAACTGTGCGCGTCCTTTCTGGTAC
ACACTCCCCAAGAAACTTGAGGCAATCGGAAGCGGAATGCCGGGCGGCGT
GGTCTAGGAGCCGCTTGTTTTCGCGCCTTCCCCCTTCCATGTCTTGTCTA
TCTGTCCGACTTTCTGAGCGAGAGGGGGGCTTCATTGAACGCAAGAGCAT
CAGCCTGCAGTTGGCCGGCCAAAAACGTCCGGAATATGTCGCGCCATGCT
TGGCTCCCTCTTTGAGTAAAACAAAGACATCAACGCACCCCTTCGACAGG
GGTAATGTACCGTCTCGAACGGGTAGTTCTTGACTTTGAGTGATTTGAAT
GCATGTTTGTTCTACTTACTAATTTTTCGTCGTGTGTTTTTTTTGTTCTT
CCCTCGAACCTCCTCCTCTCGCTCTCTGTCTGTCTCTGTCTGTCTGTCTG
TCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTGTCTGTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTTTTTCTTTCCTTC
TGTATATCGAATACCTGCGCGCGTCTGCGCGGGTGATGTATCTCTCCCGG
CGACTCGTCCGTCTTTTGCACCACTCACCGTCAAAAGATGCTGGGTGCTC
ACATGAGCCAGATCGCGAAGTCGACCGCGCGCGGGGGTGGGTGGGCGGGA
GGCGGCGCGCTCGGATACACGTCCCCGGGGCACTACTACCTCGGCGCCGC
CCTGCAGGCCGTTCGGCGAAGGAAGACAGCCGACAGGCTTCTGAGAGGGG
TGAGTGGCTCCAAATTGTTTTCGAAGTTCTGAAGTAAGACAACCGAGAGG
TTTCTTAGAGGCATGACACTGGTATTTTGAGAAGGTCTTGGCTACTTTTC
GAGAAGGAGAGGAAGTGGCGACGTGGGCACTGAGCGGCAGCAGTAATTTT
GCACGACAGAGGGGCGCGTTGGCGTCACAGAGGCACCAGCGTGACGCCAG
TTGCAGGGATACGAGCTTTGTTGGGCACTGCTGTGGGCCTAGGGGTTCGT
AACTTTGCGTTATTAGTTCAAGTTTGAGACAGAGGACGCACCCGTTCGGC
GAAGGAAGAAGTTTCTGCCGCGGGTGTCTGTTAGGTATGTCAGAGAGCAC
AAGCCGGCACGAAATATTCCACAACGGCACAACAACAGGGTCGGCTGTTT
CGTTGTTTTGCGTATTCTTGGTGTTGCGCTTCACAATGATCGGTGTAGTG
CTCTCCGTCCTACCGCCAACCTCGTTGGCTTTACCAGTCAGCCCCTCCAA
CGACACCGCTAAGCCGCCGCATGCCTTGCAAGTCCCATCGGCACTATTAT
AGTGATCATGTTCTTCTTGTGTGGGCACAGCCACCGCCCCCCTTACCACC
CAGCCACGTCGTCGCACTAACCCCCCCCCCTCTCTCCCACACGTTGTGGC
AATGTCGCGAAACGGCACCAATGACGCCGAGAAGATCGACAAAGATAAGC
TCCTGGCTTCTCTGGAGGGCCTTGAAGTGCGGGAACCCTTGTACCTCGGG
GAGAGCGTGCGGCTCGTCGACCCTACGAACGCCGAGGTGAGTCGGATGAA
ATGGACACACGAATGGTGAGGGCTGCCTACGCAAAGGAAGTAAGCTTATT
GCGAAAAAAAACAGGCAGGTGGCTCGCAGACCGTATCCTTAACTTAGCCG
ATTCTATACTTTATCTAGTATATTTGTTTACGTAGAAAATGCTGCGTAGA
CTACTGAATCATCAACCCAACGGCCAGGCATTGGAGTCACTGCTGGTTTT
TTTTGCAACATCCCACCTTCTGCGGTCTACCTACCGCTTGGTGGTCGTTG
GCGAACGCATCATCAATCATCATGGAACTTTTCATGAGAAACTAGCTGCT
CTTCCGGTTCTGTACAGCCCAGACGTTGCTACGAGCACGTTCGCAAGCCC
AGTTTTTTTCTACTTTTTTCGAGTTGAGGCTTATTTCCTCATCGCGTTGT
CATGGTCGAGAGCCGAAGCTTGATGGCCAGCGTTCCTGCCTGGCTGGCTC
ATTCGATGGGACTCGTCCGTTTGATCGGCTTCCTCAACGAATTGTCCAAG
GGCTTTTCGTCATCAGTTGCCTTTTGTCGTTGCCGGATTCTTATGTTGTC
GTCTTCATCACGTACACAGTCGACCCTAACCCGGACTGCATAGTTGTCTT
CGACGCTGCCTCAAGTGACCCTTTCCCTTTAACCCCACGACCCCCCCCCC
CCCCCCCCCCGGTTCAACATCCGCCGTGTGCGGCACAACCAACAACATCG
ACGACGATGACGACAGCGAAACCTTCGACAGGAGTGCCGAGGGTTCCTGG
ACCTGGAGGAGACCAAGACCGACAGGGTGGGGGTGGCTCGTTCCCTGCTG
GTGAAGGCTCTGGAGCACTGCCCGTCGGGAGAGGATGGCTTCCGACGGCG
GCGGGTGCTTATCCTAGGGCACCTCGGGGAGGAGAGCTTCGTCGCGGGAA
GGTAGGATGGAATGGGACGGAACGAAATGGGATGGGATAGAATGAAAGGG
GGGGGGGGGGGATGGGGTGGGATGCTATGGGTTGTGTTGGGCGGGATAAT
TAGGTCTTTGTGAGCGAGCCCGCGCGACCTCGAGGAGAAGGTTTTTCGGC
GGCCATGTGGATGCGGTGGGGTGGGGTTAGGTGGGTGGGGTGGGAGGGTA
CGACGTAGATGCAATCGTTGAGTTGAAGGGGTTGAATCCCTCCCCCCGTG
AGAGTTGTGGTTTCGCGACCTTGGCGATGGGAGCATTCAGTACGGTGTGA
GGCGTGGAACTAAGACGTGGAACTATTTTCAAGCTTGATGGCGCTGTACA
CGCCGGCGATACTGCTGTAGCTTCGGCGGCGCGATGGATTTCCGATCACC
ACCAACTTGTTGCCAAATAATGAACGCGAGCCTCGTCTGCTCCTCCTTCT
CTATCCCCCGTCCGCTCCCGCCAGATACGACGACGCATTGGAACGCCTGC
CACCTGTGTGGAAAACCTACCTGGCCGATGGCTGGCTTAAGCTGGCGACG
GCCGCTCTCCGTAGGGTGTACGTTTGCGCTTGGCGGTCTGGAAAGGTAAG
TTTTTCTGTTTGTTATTTATTATGTAGCTTAGTATTTCGCTAAAGCAAAA
TCCACCGCCCGCTTTCGATTAACAGACCGCGCTCTTTCGGGCAAGGCGCT
TTACCAGCGAGAAGCTTGCAGCCACACTAACGACCACACCCGCGATTTGT
GTCCACTCTTCTGCGTGGTGACTAGCTTCTGAAGCCTGTCTGTCCTGTGT
GCTGTTGTGTAAATTCTATTCCCCACAATCCTCACACTCTCGAGGGCTGC
GTATCGCTGCCTCTGTAATCAAGCAAGCAAGACGAAAGGCTTTTACAGGT
GGTGCTGGCCGTGCCGTCTTTGATGGTCAACAGACGGCTAGGTTAAAGCA
CAAACACACCATGTTAACTTTTGCTGTCCATGCGACAAATGAAGAGGTTT
TTCCCGTGTTGAGAATTTTCTGCTACACGTCTGTATTTTGTACCACACAT
TTATGGATCCACATGCATGGCCGAGCGAGCATACCACGGGGCCGCGGCCG
ACACATCGCCCGTGCCGCGTAGACCAGCTAGAGCAAGAGTCTAGCAAAAG
CGAAGTGTGAGAGTGGGGGGGGGAGGAAGGGGGAGGTGCTCGCTAGGCAA
CTAACAGGCTACGACAGCAGCAACACTAGATAAATAAAGCAAGTGAATCT
ATACCTCGTTCGGTGTACGTTGGTAATAGTCAACGACAAGCTCGCCTGTG
CTCAGCACAAGCGTCGGTACGCAGAAACAAACGCCTCCGGTGCCCTCCTA
TACAATTAAAAAATGGCCGCACGCACACACGCACGCACGCAGAAGGCATG
TTCCACGCACTTAGCCCCGAACGATGCACTTGTCTTTCTTCTTGTATATG
TGTACATGACATGGAACGCAGGCAAGAACCGTGGCGGACATGGCGCTGCG
GCTCTCCAGCAACGCGCTACGACCCTGGGTGCCCCTCGAGGAGTCGAAAC
GCCTCCTGGCCGAAGCGCTCCCGCTCGTTGGGGCGTTGGAGGCTCCGTCG
GAGGCGGTGCAATCAGACCGGGGATTCGTCGCAAGCGTCCCCCCCGAGGG
GCCGGCGTCTGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8836:374..5736+

>mRNA_Ecto-sp9_F_contig8836.17016.1 ID=mRNA_Ecto-sp9_F_contig8836.17016.1|Name=mRNA_Ecto-sp9_F_contig8836.17016.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2430bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8836:374..5736+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGCCGCGGGACGGGGGACGGTTTCAGGGTGGAAGGGGCGACGCAGA
TAGAGGACCGCTGGGGGGGGCATTCCTTCGTGGGGGAGCGGACCCGATGG
AGCAGATGGTGCCGCGGGACGGGGGACGGTTTCAGGGTGGAAGGGGCGAC
GCAGATAGAGGACCGCTGGGGGGGGCATTCCTTCGTGGGGGAGCGGACCC
GATGGAGCAGATCCGAGGAGTGGCGGAAGTGGTCCACCTCCGGCTGGTGC
GGAACCACCTGCACCGCAACATGAGCGTCGAGGGGGCCATCCGACAGCTC
CGGCGGCACGTGTCCGCATTCGGCAGACCCGGTGATGCTGCGGCCTCCGC
CGCTGCTTCTTCCCGTGCCGGAAAAGGCTCGCCTTCGTCTACGTCTTCGG
CTGGTGGGGGGGGGGGGGAGGCGGCGGGGAAGCCAGGGGGAGGGGGGGGG
GGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGGGGTGAGGAGGAGGGGGGG
GTGGGTGCCTTACCGTCACCACGCGTGGCTGTCGCGGCAGTACCTTGTGT
TCGGAGAGATCCGAGGAGTGGCGGAAGTGGTCCACCTCCGGCTGGTGCGG
AACCACCTGCACCGCAACATGAGCGTCGAGGGGGCCATCCGACAGCTCCG
GCGGCACGTGTCCGCATTCGGCAGACCCGGTGATGCTGCGGCCTCCGCCG
CTGCTTCTTCCCGTGCCGGAAAAGGCTCGCCTTCGTCTACGTCTTCGGCT
GGTGGGGGGGGGGGGGAGGCGGCGGGGAAGCCAGGGGGAGGGGGGGGGGG
GGGGGGGGGGTGGGGGGGGGGGGTGGGGGGGGTGAGGAGGAGGGGGGGGT
GGGTGCCTTACCGTCACCACGCGTGGCTGTCGCGGCAGTACCTTGTGTTC
GGAGAGATGCTGGGTGCTCACATGAGCCAGATCGCGAAGTCGACCGCGCG
CGGGGGTGGGTGGGCGGGAGGCGGCGCGCTCGGATACACGTCCCCGGGGC
ACTACTACCTCGGCGCCGCCCTGCAGGCCGTTCGGCGAAGGAAGACAGCC
GACAGGCTTCTGAGAGGGATGCTGGGTGCTCACATGAGCCAGATCGCGAA
GTCGACCGCGCGCGGGGGTGGGTGGGCGGGAGGCGGCGCGCTCGGATACA
CGTCCCCGGGGCACTACTACCTCGGCGCCGCCCTGCAGGCCGTTCGGCGA
AGGAAGACAGCCGACAGGCTTCTGAGAGGGATCGACAAAGATAAGCTCCT
GGCTTCTCTGGAGGGCCTTGAAGTGCGGGAACCCTTGTACCTCGGGGAGA
GCGTGCGGCTCGTCGACCCTACGAACGCCGAGATCGACAAAGATAAGCTC
CTGGCTTCTCTGGAGGGCCTTGAAGTGCGGGAACCCTTGTACCTCGGGGA
GAGCGTGCGGCTCGTCGACCCTACGAACGCCGAGCGAAACCTTCGACAGG
AGTGCCGAGGGTTCCTGGACCTGGAGGAGACCAAGACCGACAGGGTGGGG
GTGGCTCGTTCCCTGCTGGTGAAGGCTCTGGAGCACTGCCCGTCGGGAGA
GGATGGCTTCCGACGGCGGCGGGTGCTTATCCTAGGGCACCTCGGGGAGG
AGAGCTTCGTCGCGGGAAGCGAAACCTTCGACAGGAGTGCCGAGGGTTCC
TGGACCTGGAGGAGACCAAGACCGACAGGGTGGGGGTGGCTCGTTCCCTG
CTGGTGAAGGCTCTGGAGCACTGCCCGTCGGGAGAGGATGGCTTCCGACG
GCGGCGGGTGCTTATCCTAGGGCACCTCGGGGAGGAGAGCTTCGTCGCGG
GAAGATACGACGACGCATTGGAACGCCTGCCACCTGTGTGGAAAACCTAC
CTGGCCGATGGCTGGCTTAAGCTGGCGACGGCCGCTCTCCGTAGGGTGTA
CGTTTGCGCTTGGCGGTCTGGAAAGATACGACGACGCATTGGAACGCCTG
CCACCTGTGTGGAAAACCTACCTGGCCGATGGCTGGCTTAAGCTGGCGAC
GGCCGCTCTCCGTAGGGTGTACGTTTGCGCTTGGCGGTCTGGAAAGGCAA
GAACCGTGGCGGACATGGCGCTGCGGCTCTCCAGCAACGCGCTACGACCC
TGGGTGCCCCTCGAGGAGTCGAAACGCCTCCTGGCCGAAGCGCTCCCGCT
CGTTGGGGCGTTGGAGGCTCCGTCGGAGGCGGTGCAATCAGACCGGGGAT
TCGTCGCAAGCGTCCCCCCCGAGGGGCCGGCGTCTGAGGCAAGAACCGTG
GCGGACATGGCGCTGCGGCTCTCCAGCAACGCGCTACGACCCTGGGTGCC
CCTCGAGGAGTCGAAACGCCTCCTGGCCGAAGCGCTCCCGCTCGTTGGGG
CGTTGGAGGCTCCGTCGGAGGCGGTGCAATCAGACCGGGGATTCGTCGCA
AGCGTCCCCCCCGAGGGGCCGGCGTCTGAG
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