mRNA_Ecto-sp9_F_contig8834.17014.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX3_9PHAE) HSP 1 Score: 531 bits (1368), Expect = 4.760e-171 Identity = 302/333 (90.69%), Postives = 303/333 (90.99%), Query Frame = 1
Query: 1 TPEAGEEGGFRGGTMEAETTRTSFAGTSGFMAPEVESGRPSSLASDMYSLGAVLFHMHFPDHPTGPLPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAVDPAGRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPLTAEPLGRRPAKDPTEKSFAPRFSGAVAGAAANEAASVVDDPDDVSRFGAYLEPISGSAEEHAEXXXXXXXXXXXXGDNFEARRE-AERSVVEGA 996
TPEAGEEGG RG TMEAETTRTSFAGTSGFMAPEVESGRPSSLASDMYSLGAVLFHMHFPDHPTGPLPVAEG GVIPRSADVATADLLKALLA DPA RPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLV+TDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCD PPP TAEPLGRRPAKDPTEKSFAPRFSGAVAGAAAN AASVVDDPDD SRFGAYLEPISGSAEEHAEXXXXXXXXXXXX AERSVVEGA
Sbjct: 1355 TPEAGEEGGVRGSTMEAETTRTSFAGTSGFMAPEVESGRPSSLASDMYSLGAVLFHMHFPDHPTGPLPVAEGSGG-------GVGVIPRSADVATADLLKALLAADPARRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVQTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDPPPPPTAEPLGRRPAKDPTEKSFAPRFSGAVAGAAANGAASVVDDPDDASRFGAYLEPISGSAEEHAEXXXXXXXXXXXXXXXXXXXXXXAERSVVEGA 1680
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Match: Outermembrane (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX6_ECTSI) HSP 1 Score: 488 bits (1257), Expect = 5.940e-156 Identity = 304/374 (81.28%), Postives = 307/374 (82.09%), Query Frame = 1
Query: 1 TPEAGEEGGFRGGTMEAETTRTSFAGTSGFMAPE------------------VESGRPSSLASD--------------MYSLGAV------LFHMHFPDHPTGPLPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAVDPAGRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPLTAEPLGRRPAKDPTEKSFAPRFSGAVAGAAANEAASVVDDPDDVSRFGAYLEPISGSAEEHAEXXXXXXXXXXXXGDNFEARREAERSVVEGAAASG 1008
TPEAGEEGGFRGGTMEAETTRTSFAGTSGFMAPE V G P AS + SLG V L H P P PVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLA DPA RPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSV+RLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPP TAEPLGRRPAKDPTEKSFAPRFSGAVAGAAAN AASVVDDPDDVSRFGAYLEPISGS EEH E XXXXXXXXX D+FEARREAERSVVEGAAASG
Sbjct: 1189 TPEAGEEGGFRGGTMEAETTRTSFAGTSGFMAPEAVREGRGARSPDPYLVTGVRHGAPHVSASTGRGSWLGGGIRKALLASLGHVQPGSRALPHAFSPTIPPARFPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAADPARRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVIRLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFENCDSPPPPTAEPLGRRPAKDPTEKSFAPRFSGAVAGAAANGAASVVDDPDDVSRFGAYLEPISGSVEEHVEEXXXXXXXXX---DSFEARREAERSVVEGAAASG 1559
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YG59_9STRA) HSP 1 Score: 157 bits (396), Expect = 4.110e-40 Identity = 96/191 (50.26%), Postives = 121/191 (63.35%), Query Frame = 1
Query: 91 MAPEVESGRPSSLASDMYSLGAVLFHMHFPDHPTGPLPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAVDPAGRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMR-LVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFE 660
MAPEVE+G ++ ASDMYSLG +LF +HFPDHPTGP+ A ++G +A A DLL LL V PA RP ASDAL YF+VS V RL +DGA+ EQ KL A+R LF VR+ ++ + P +W ++R + LV V+ L DAA ALR ++I F GEAGVDEGG+LSE TL FE
Sbjct: 1 MAPEVEAGGAATRASDMYSLGCLLFWLHFPDHPTGPVAGAP---------IRASGEAAAAASAALMDLLHQLLQVRPASRPSASDALLHAYFQVSFVDRLLEDGAVPEQHAKLAAMRALFARVREASRRAPPTRWMLRRGATTLVSDVLAALAALDAA--ALRAPVRIAFAGEAGVDEGGMLSEALTLFFE 180
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLZ2_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.120e-20 Identity = 91/253 (35.97%), Postives = 117/253 (46.25%), Query Frame = 1
Query: 7 EAGEEGGFRGGTMEAETTRTSFAGTSGFMAPEVESGRPSSLASDMYSLGAVLFHMHFPDHPTGPLPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAVDPAGRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVR-------------------DEAKPSGPLKWTVKRDSRYLVPSVM-----RLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFE 693
+A EE G T EAE T AG+ F S A+DM+S G ++ HF + P LPVA +P S D LL+ LLA DP RP AS+A+ YF S+ RL G LL Q KLEAVR L R VR D +P P + + ++ LV V+ R + AG A R LK+ FQGE G+DEGG+ +EM+ L FE ++ P GLFE
Sbjct: 1086 QAPEEHGLLPQTPEAELPSTDAAGSENF----------SPYAADMFSFGVLV---HFMNLPQVELPVAGCLS------------LPTSLDPNLRSLLQQLLASDPDQRPTASEAMLHPYFTASYSDRLIASGDLLRQNEKLEAVRSLIRQVRRDHSNRVERLTVQRRGLDLDTPRPDRPRRNSRQQADARLVWQVLEHFARRGGNAEQAGGA-RSHLKVEFQGEVGLDEGGLTAEMFRLFFEGLVSPEVGLFE 1312
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JMR1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 6.770e-16 Identity = 80/221 (36.20%), Postives = 110/221 (49.77%), Query Frame = 1
Query: 88 FMAPEVESGRPS-SLASDMYSLGAVLFHMHFPDHPTGPLPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAVDPAGRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKP-SGPLKWTVKRDS-------RYLVPSVMR----LVRTDAAGSA-----LRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFEN 696
F+APE+ SG + + ASDMYS GA L +H P XXXXXX D LL L A DP RP A+DA+ YF+ S++ R G L+ Q KLEAVR L R VR E + + +KR++ + +V R +R + ++ RR LK+TF GEAG+DEGG+ +EM+ L F ++ GLFE+
Sbjct: 1175 FVAPEILSGESAPTTASDMYSFGATLRWLH------REAPGVRDEPKEXXXXXXXXXXXGSQPDEDMKHLLSVLTATDPDLRPSAADAILHPYFQNSYMDRFIAGGDLIGQNEKLEAVRDLLRRVRSEMRGLPNRREIVIKRENVVDDVLNHFSESNVRRHTFEQIRKGGSNASSSDHITRRPLKVTFDGEAGIDEGGLTAEMFALFFRGVLNDEGGLFES 1389
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKZ0_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.720e-13 Identity = 71/216 (32.87%), Postives = 94/216 (43.52%), Query Frame = 1
Query: 88 FMAPEVESGRPSSLASDMYSLGAVLFHMHFPDHPTGPLPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAVDPAGRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVR--------DEAKPSGP-----LKWTVKRDSRYLVPSVMRLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFEN 696
F+APEV G +S A+D+Y+ GAVL + A G + P + + L+ LL DP RP A+D YF S+V R G ++ KL AVR L VR D A GP + RD+ A RR L++TF+GEAGVDEGG+ EM+ L FE + P GLFE+
Sbjct: 97 FVAPEVAGGGGASAAADVYAFGAVLRWLW--------RATAAGGGATGGARTGA----PAAGEDELRTLVARLLVADPRARPSAADVALHPYFTDSYVDRYVAGGDIVGVNAKLAAVRDLLAAVRSASRRARADLAVARGPGLADRVLAFFGRDAVAARXXXXXXXXGAAGVPPARRPLRVTFEGEAGVDEGGLAREMFALFFEGALAPAAGLFED 300
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Match: Uncharacterized (protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZPV0_DICPU) HSP 1 Score: 74.3 bits (181), Expect = 8.450e-11 Identity = 57/196 (29.08%), Postives = 94/196 (47.96%), Query Frame = 1
Query: 76 GTSGFMAPEV-ESGRPSSLASDMYSLGAVLFHMHFPDHPTGPLPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAVDPAGRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGP-LKWTVKRDSRYLVPSVMRLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLF 657
GT + APE+ E G + ++D+++ G +L+ HFP P+ + E G D + LL ++L +P RP A YF S V L L++ K+ A R ++ + A+ G ++ T++RD +V + + + L L+++FQGE G+D GG+LSEMY+LLF
Sbjct: 1203 GTELYKAPEMKEQGVKGNYSTDIWAFGVMLYKTHFP-RAREPILLPEEEAVPMPSLIYHGGEQQHQVDQRLSSLLSSILQRNPQLRPSAHQVAVHPYFVTSLVEDLLSSRTLIDSREKIAAFRAHVSSLSEMAEEMGESIQLTLRRDK--IVSELFQFFHKKIEQNKLFSRLEVSFQGEKGLDHGGLLSEMYSLLF 1395
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Match: CAMK/CAMKL (protein kinase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D2J6_THETB) HSP 1 Score: 73.2 bits (178), Expect = 2.100e-10 Identity = 65/202 (32.18%), Postives = 96/202 (47.52%), Query Frame = 1
Query: 88 FMAPEVESGRPSSLASDMYSLGAVLFHMHFPDHPTGPLPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAVDPAGRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLFEAMMLPRFGLFE 693
++ PEVESGR SD+YS+G +L+ TG LP DV LL +L DP R +AL ++F S L D +LE +K+ +R +R + K + ++ T+ R+ +V SV+R + A S + LK+ F+GEAGVD GG+ +MYT F + PR+ LFE
Sbjct: 1916 YVGPEVESGRVVP-GSDVYSVGIMLYQAV-----TGRLPSMAQVLHGATGDDVK--------DVKLKSLLNGMLQPDPDKRVGVFEALTHEFFSHSVADTLFADRKILESEQKINLLRKHLEALRAQNKRNF-VRLTISRED--IVVSVVRAF-SSLAPSEMLCPLKVHFEGEAGVDAGGLTGDMYTEFFMHVFEPRYALFE 2099
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Match: hypothetical (protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A0E6) HSP 1 Score: 61.6 bits (148), Expect = 1.130e-6 Identity = 61/201 (30.35%), Postives = 93/201 (46.27%), Query Frame = 1
Query: 64 TSFAG-TSGFMAPEV-ESGRPSSLASDMYSLGAVLFHMHFPDHPTGPLPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAVDPAGRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGP-LKWTVKRDSRYLVPSVMRLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLF 657
T FAG T ++APE+ ES S +D+++ G +L+ HFP L E + IP+ D LL ++L +P+ RP A YF S V L L++ K+ A R ++ ++ + L +VKR S L+ V + + L L++ FQGE G+D GG+ SEMY+L F
Sbjct: 1102 TLFAGGTEMYLAPEMKESKSTGSYTTDIWAFGVMLYKAHFPRARDPFLMPGE-----------MSVAIPQHPDQRLTALLGSILQRNPSQRPNAHQIAVHPYFVTSLVEDLLSSRTLIDSREKIAAFRAHISSLTMLSEETNESLVMSVKRSS--LIVDVFQFFKK-MESIKLFSHLEVDFQGEKGLDHGGLSSEMYSLFF 1288
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Match: Uncharacterized (protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B9B5_POLPP) HSP 1 Score: 58.5 bits (140), Expect = 1.110e-5 Identity = 58/208 (27.88%), Postives = 91/208 (43.75%), Query Frame = 1
Query: 55 TTRTSFAG-TSGFMAPEV-ESGRPSSLASDMYSLGAVLFHMHFPDHPT-----GPLPVAEGXXXXXXXXXXSAGVIPRSADVATADLLKALLAVDPAGRPRASDALQAKYFRVSHVSRLQQDGALLEQTRKLEAVRVLFRTVRDEAKPSGPLKWTVKRDSRYLVPSVMRLVRTDAAGSALRRALKITFQGEAGVDEGGILSEMYTLLF 657
T T F G T ++APE+ ES + ++D+++ G +LF HFP G L +A IP+ D LL ++L +P RP A YF S V L L++ K+ A R ++ ++ + R S +V + ++ + L L++ FQGE G+D GG+ SEMY+L F
Sbjct: 1118 TNATMFTGGTEMYLAPEMRESQVTGTYSTDIWAFGVMLFKAHFPRSRDPFLLPGELNIA----------------IPQHPDQRLVALLSSVLQRNPQLRPTAHQIAVHPYFVTSLVEDLLSSRTLIDSREKIAAFRAHISSLAALSEETNQTLVMQVRRSTLIVDVFQFFKKMES--NKLFSLLEVDFQGEKGLDHGGLSSEMYSLFF 1307 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8834.17014.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8834.17014.1 >prot_Ecto-sp9_F_contig8834.17014.1 ID=prot_Ecto-sp9_F_contig8834.17014.1|Name=mRNA_Ecto-sp9_F_contig8834.17014.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=339bp TPEAGEEGGFRGGTMEAETTRTSFAGTSGFMAPEVESGRPSSLASDMYSLback to top mRNA from alignment at Ecto-sp9_F_contig8834:1440..5586- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8834.17014.1 ID=mRNA_Ecto-sp9_F_contig8834.17014.1|Name=mRNA_Ecto-sp9_F_contig8834.17014.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4147bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8834:1440..5586- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8834:1440..5586- >mRNA_Ecto-sp9_F_contig8834.17014.1 ID=mRNA_Ecto-sp9_F_contig8834.17014.1|Name=mRNA_Ecto-sp9_F_contig8834.17014.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2034bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8834:1440..5586- (Ectocarpus species9 EcSCA_722f female)back to top |