mRNA_Ecto-sp9_F_contig8828.17010.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8828.17010.1
Unique NamemRNA_Ecto-sp9_F_contig8828.17010.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8828.17010.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI)

HSP 1 Score: 358 bits (919), Expect = 2.080e-117
Identity = 177/179 (98.88%), Postives = 179/179 (100.00%), Query Frame = 1 
Query:    1 GGRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKNELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHELVESRSTTAEGYLC 537
            GGRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGK+ELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAH+LVESRSTTAEGYLC
Sbjct:   76 GGRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLC 254
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BLAST of mRNA_Ecto-sp9_F_contig8828.17010.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 1.200e-114
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 1 
Query:    1 GGRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKNELQ----AARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHELVESRSTTAEGYLC 537
            GGRDGVAAVT+GHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGK ELQ    AARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEA+YLVFGKEGGKLLRDNRWDLQLWDFAH+LVESRSTTAEGYLC
Sbjct:   76 GGRDGVAAVTIGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAYYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLC 258
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8828.17010.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.080e-11798.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.200e-11495.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8828contigEcto-sp9_F_contig8828:472..4525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size538
Cds size537
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8828.17010.1prot_Ecto-sp9_F_contig8828.17010.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8828 472..4524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930934.4631803-CDS-Ecto-sp9_F_contig8828:471..5891622930934.4631803-CDS-Ecto-sp9_F_contig8828:471..589Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8828 472..589 +
1692278955.9959998-CDS-Ecto-sp9_F_contig8828:471..5891692278955.9959998-CDS-Ecto-sp9_F_contig8828:471..589Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8828 472..589 +
1622930934.4806404-CDS-Ecto-sp9_F_contig8828:2089..22201622930934.4806404-CDS-Ecto-sp9_F_contig8828:2089..2220Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8828 2090..2220 +
1692278956.007434-CDS-Ecto-sp9_F_contig8828:2089..22201692278956.007434-CDS-Ecto-sp9_F_contig8828:2089..2220Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8828 2090..2220 +
1622930934.4995303-CDS-Ecto-sp9_F_contig8828:3138..32661622930934.4995303-CDS-Ecto-sp9_F_contig8828:3138..3266Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8828 3139..3266 +
1692278956.0170112-CDS-Ecto-sp9_F_contig8828:3138..32661692278956.0170112-CDS-Ecto-sp9_F_contig8828:3138..3266Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8828 3139..3266 +
1622930934.5220525-CDS-Ecto-sp9_F_contig8828:3543..36401622930934.5220525-CDS-Ecto-sp9_F_contig8828:3543..3640Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8828 3544..3640 +
1692278956.0258417-CDS-Ecto-sp9_F_contig8828:3543..36401692278956.0258417-CDS-Ecto-sp9_F_contig8828:3543..3640Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8828 3544..3640 +
1622930934.5398288-CDS-Ecto-sp9_F_contig8828:4461..45241622930934.5398288-CDS-Ecto-sp9_F_contig8828:4461..4524Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8828 4462..4524 +
1692278956.0442755-CDS-Ecto-sp9_F_contig8828:4461..45241692278956.0442755-CDS-Ecto-sp9_F_contig8828:4461..4524Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8828 4462..4524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8828.17010.1

>prot_Ecto-sp9_F_contig8828.17010.1 ID=prot_Ecto-sp9_F_contig8828.17010.1|Name=mRNA_Ecto-sp9_F_contig8828.17010.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=179bp
GGRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYR
QGYQQLDNYLVRVLAGKSAWDLPPGRVGKNELQAARIALGKFEVLLRADC
LAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHYLVFGKEGGKLL
RDNRWDLQLWDFAHELVESRSTTAEGYLC
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mRNA from alignment at Ecto-sp9_F_contig8828:472..4525+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8828.17010.1 ID=mRNA_Ecto-sp9_F_contig8828.17010.1|Name=mRNA_Ecto-sp9_F_contig8828.17010.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4054bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8828:472..4525+ (Ectocarpus species9 EcSCA_722f female)
GGCGGGCGGGACGGGGTAGCAGCGGTCACGGTCGGCCACCCGATACAGCG
GATTCTGCTTCACTTGAGAGCGGAAGGGGTCGGGCTGGAGGAAGGCATGT
CTTGGCCCGAGCGAGGAGGTATGTCATTCTAATTCTACACGAGTGCACCA
TCAGTGGTATTACAGCATGTACGCTCGTTGGCCCGCGCACATCCATCTCC
ACTGCTGTGGTTCTCGCACAGCTTCAGACAGCTTGCATAACCACCGAACG
CAACAGAGAAGAGAGACGATGTGGCAGCATGTGTGGAGAACGGATGAGCG
CACGTTTCTGCCATTTGTCTTCTATCTTACAACAACAGTATGCAGTGCGG
ACACACTTTTCGCTCGGAGCTCTTTGCGAAGGCCTTCATGTATCCGCTGG
GGCGACTAGAGAAACAAGTTTCGAGAGCGACCGAGCCAAGTTGTACTGGG
AAGATCTATCTGCCTGGTGTTTCCGATGGCGGTCATTGTCAATGGCCACT
GACCATGTACCGGTTGTTGCAGGCTGGGCCATCGGAAGCCTGCTAACTGC
TGTTTGACTTTGGATTTTTGAACAACATGTACAATGTTTGTTCTCGTCAA
GCTGGCTCTATTCGATGGCGTCGAAGGGACTACTGTCGACCACAGCAGTA
CTGCCGCGAAATGGCAGGTCATGTTTCATGCAATCATCCCAGTACATGTA
TTGGTTTTAAACACCGCCGCTGTTGATGCATTCCAAACACCATCCTTGGG
TTCCCACGAGTGACTGCCTGCCTCCCTTTCGTCAGTGCCAGATATCTCCA
TATCTCCATACATATCATACGCAGCCGTCGGGTTAGACCTACTGCTGTGT
GCATGTACACCACGTATACACACACTCACATAGTTAGGGAAAAGCCAAAG
CGGATATTCACTCGTTGGAGAACCTCGCCAGCCCTTCGTTGTTGATATTG
CGATATATAAAAATTAAACGAAATTGGGCAAGGCAGCAGCAGTTGGTCAA
CCAACTTCTGGATGATGATACCGACACCACCTTTCACCACCACCAACACC
GCACTACTCGATCCCTCCTGTGCACACCAGCACCGACAACACCAACTACC
CGCACCCTCATACCACCATCACCGTTGTCGACATCGAAGCACCAAAGGCA
GCACCTAAAAAAGATAAAATCAGAGGCACGCAAGACTGTTGTACAACGTG
CAGACAGATTCATATTGGGACATGTTTTTTGGAGACATCTCTCAGCAAGT
CACGGTGTGCGCTGCACCAGCGACGACAAAGGCCAACCCAACTGGGGTGT
CAATGGAAACAAAAATACGGTGGGATGGAAGCGTATATGTATGGTCGTGT
TGCATTGTCGAGGAAGAGAAAAATGAAGCGTTCGATATTTTTCTGACGGC
ATGTTGTTCTCCTCCAAGCGGACTACAGACAAACGAAGCGCATGCGTTGC
ACGCTCAACACCTACTGCTGCTGCTGCTGCTGTTGTCCGGCCATTGTGTC
GGTATTTTGTTCTGCTTGCGCCGGCTACTAAACAAACAAAGCGTGCGTGC
ACGCTCAACTGTTGCCGCTGCTTCTGCCTGGCCTTTGCGTCGTCATGGGC
GGGCGGGGGGGGGTGCAGGCAAGCGCGCCGACGCTAGCTCCTCCTACCGG
CAGGGCTACCAGCAGCTGGACAACTACCTCGTGCGCGTCCTGGCGGGGAA
GTCGGCGTGGGACCTTCCCCCCGGCCGCGTGGGGAAAAACGAGCTGCAGG
TGAGTAGGCTAAGGCCAGTATGTAGCGTCCGCAGGGTTTTTCGTTCAAGT
AAATATGTTGGATAAAGTGTGCAATTGGGTCAGGGTGCGGGTCTGCGTAC
CCATCCCTGTTCTATTTCCTCGTAGATTCTCGCGAAGGCGGTCCGTCAAG
GCGGTCCGTTAAGGCGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGTCTCTGTCTGTCTGTCTCTGTCTCTGTCTCTGTCTCTGTTTC
TCTCTCTCTCTCTCGACCACGGCGTCACTATTGTACAGGCCACTTGTGCC
GCCCGCTGCTACTTCTACTGCCACGGAAAAAGCATGGCGACCACGACGTC
TGTTGTACAGGCCACTTGCGTTGCCTGTTATACAAGTCACTTGGGCATAC
TTGCGCCGCCGCTAGTTACTTGTACTATTGCCATTGCCACCACAAGCGTT
GTACGGAGTAGATTCCGACGGCTTTCGTCAGCGCCAGTTGCGTGCTGTGG
GAGTGGCTTTGCCGGCTTCGCGTACCGAGGGTTTCCGCTGACTGTCTTTA
GTCCCGCCGCCGCCGACGGTACGAGCATACGTGTGACAGACAACACCCCT
CTCTTTCTTGGAACATCCGACACACCCATCACCGTCACTATTCGTGCAGT
CTATCACAAATGTCTCGATGCCCTGCTTCCTCCCCTTCTATTGTCTACCG
TTCTGGACGGACATCCGCGCGGCGCCGCCGTCCGTTAGCGCCTTTGCCTG
CTAGCTATATCTCCCAGTTGCGCTGCGAAGCAGCCCCCTTCCACTGTATG
TAATAACCACCAAATTGCTCCTGGTCGTGACTTGCGATGCTGCGGCAGGC
ATTCCGGTAAGGATCCTTCTTTTGGCGCCTGGCTGCTAAACGCCGAACCT
GTTGTTGATCCCTGCAGGCCGCTCGGATCGCGCTCGGAAAGTTCGAGGTG
CTGTTGAGGGCGGACTGCCTAGCAGTGGACCTGCCCCTCCTGCAGCCCTA
TCTGGCGAAGGCTGTTCCTGCGGCCCAAGTCGCGGACGCCGCTAGGTGCA
GCAATTCGTGGAGGCTGTTGTTGTTGTTGTTGTTGCTTCTGTTTTTGTTG
TCACTGCTGCTGCTGCTGCTGCTGTGGTTGTTGCTAGCGATGGTGGATGC
TATTGCTGTTGCGGTCGCTACCTTGAGATTTTTGCCTTAGAATCTCACGT
GCGCTTGCCGGCTCCACCCCCACCCGTTGCCTAGACCCCCCCCCCACGCT
TTAACGTCCGCGGAACCCCTCTCACGGCGAGCTCGCGCCTCGGCCCCCTT
TCCCGTCTTCACGTTTTTGTAGAGAGACGGAGGATCTGCTAGAATCCGGA
GAAGCACACTATTTGGTCTTCGGGAAAGAGGGGGGCAAGCTTTTGCGGGA
CAACCGTTGGGACCTTCAGGTGGGCACCTACCGTACGTGACACAAGATAC
CACACACCCCGGACCGGTTTTTCAAAGCTCGATTACTCCACAGCAGAAAA
AAGTGGCGGTGCCAAAAATTGCGGCGTTGGAACCGTCTCGTGGAGATTTT
TTCCGAAAACGTACCTTTTGGTTTTGGCATCTTCTTCGTCGTGGAGAAGC
CGAGGTTTTGGAAATCGGCCCAGGGGGTGAGTTATCATACACCATCTCAC
CAGCAGTAAGCACAGCGGCATGAGCGGGCGGGAGCACGCGCCCACGTTCC
TCGAACTCTAAGGCCCCTCCCTGACTCGGGGGTGGACTTGCCCTCTTGTT
GTTTCCGGCTGCCGCAGCAGCCGGCGTGTTAATTTTGTTTTTCGCTGGGA
ATTTTGGATGCACGCGCCGTTGGTGGCTCGCAGAGAAACGTTGCAGATAT
CTACTGCTGTAGGCTATCAGGGATTGCAGACCCCGGAGTGGCTCCCACGG
CCGATAGCTCTACCCTGACTCAGCTGTACTTGTTACGAGTGTTTGTTCGT
GTCGCAAACTCTCAAACTCTACCCTGGGAACGCCGCCGGTTGGCGACCGC
AGCCGGAGGGGGGGGGGGTCGGTACGAATGTCCCGGTTGGCGTTTATCTC
ATGGGGATGGCAAGCGTATAGTAACCGCTCTACCCCTCCTCTTCGTCCCA
TTACCGTGACATCGTTTGTGATGCACCTACGGATCGCGCTCTCGTCTCGT
CTCTGCATCATCGCGCTCTTCGTGCTGCTCGTGTGTGGCAACGTGTGCGG
CCTTGGCTTGGCCCTGTTTTGGCTGTGGTCCCCCCCACAGCTCTGGGATT
TCGCGCACGAGCTGGTGGAGTCTAGGAGCACGACAGCCGAGGGCTACCTG
TGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8828:472..4525+

>mRNA_Ecto-sp9_F_contig8828.17010.1 ID=mRNA_Ecto-sp9_F_contig8828.17010.1|Name=mRNA_Ecto-sp9_F_contig8828.17010.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8828:472..4525+ (Ectocarpus species9 EcSCA_722f female)
GGCGGGCGGGACGGGGTAGCAGCGGTCACGGTCGGCCACCCGATACAGCG
GATTCTGCTTCACTTGAGAGCGGAAGGGGTCGGGCTGGAGGAAGGCATGT
CTTGGCCCGAGCGAGGAGGGCGGGCGGGACGGGGTAGCAGCGGTCACGGT
CGGCCACCCGATACAGCGGATTCTGCTTCACTTGAGAGCGGAAGGGGTCG
GGCTGGAGGAAGGCATGTCTTGGCCCGAGCGAGGAGGCAAGCGCGCCGAC
GCTAGCTCCTCCTACCGGCAGGGCTACCAGCAGCTGGACAACTACCTCGT
GCGCGTCCTGGCGGGGAAGTCGGCGTGGGACCTTCCCCCCGGCCGCGTGG
GGAAAAACGAGCTGCAGGCAAGCGCGCCGACGCTAGCTCCTCCTACCGGC
AGGGCTACCAGCAGCTGGACAACTACCTCGTGCGCGTCCTGGCGGGGAAG
TCGGCGTGGGACCTTCCCCCCGGCCGCGTGGGGAAAAACGAGCTGCAGGC
CGCTCGGATCGCGCTCGGAAAGTTCGAGGTGCTGTTGAGGGCGGACTGCC
TAGCAGTGGACCTGCCCCTCCTGCAGCCCTATCTGGCGAAGGCTGTTCCT
GCGGCCCAAGTCGCGGACGCCGCTAGGCCGCTCGGATCGCGCTCGGAAAG
TTCGAGGTGCTGTTGAGGGCGGACTGCCTAGCAGTGGACCTGCCCCTCCT
GCAGCCCTATCTGGCGAAGGCTGTTCCTGCGGCCCAAGTCGCGGACGCCG
CTAGAGAGACGGAGGATCTGCTAGAATCCGGAGAAGCACACTATTTGGTC
TTCGGGAAAGAGGGGGGCAAGCTTTTGCGGGACAACCGTTGGGACCTTCA
GAGAGACGGAGGATCTGCTAGAATCCGGAGAAGCACACTATTTGGTCTTC
GGGAAAGAGGGGGGCAAGCTTTTGCGGGACAACCGTTGGGACCTTCAGCT
CTGGGATTTCGCGCACGAGCTGGTGGAGTCTAGGAGCACGACAGCCGAGG
GCTACCTGTGCCTCTGGGATTTCGCGCACGAGCTGGTGGAGTCTAGGAGC
ACGACAGCCGAGGGCTACCTGTGC
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