mRNA_Ecto-sp9_F_contig8827.17008.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8827.17008.1
Unique NamemRNA_Ecto-sp9_F_contig8827.17008.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8827.17008.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR78_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.500e-15
Identity = 65/146 (44.52%), Postives = 78/146 (53.42%), Query Frame = 1 
Query:   22 RQLEDALQEVRERQREADSSSVEXXSLRSERDDLMVILSARE-----------GQVDDLETALEAARRGTAAGEXXXXXXXXXXXXXXXXXXXXXXXXRERQREADSSSVELQSLRTERDGLRVTLSAAEGRAGQAVAKVGQLEGQ 426
            RQLE  ++E+ E   +A        SL+ +R+ L   +SA E             +  L TALEA+R    A E                         ERQREADSSSVE+ S+RTERDGLRVTL AAEGRAGQ+VAKVGQLEGQ
Sbjct:  618 RQLEGQVEELHEALTQAQRQG---GSLQRQRNGLRAAVSAMEDVAWEDRNLAANTIQRLSTALEASRLEVTAEEEATAEARAEAEELRLQLEEALQALTERQREADSSSVEMASVRTERDGLRVTLFAAEGRAGQSVAKVGQLEGQ 760
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8827.17008.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.500e-1544.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8827contigEcto-sp9_F_contig8827:846..2466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size430
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8827.17008.1prot_Ecto-sp9_F_contig8827.17008.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8827 846..2466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930934.208956-CDS-Ecto-sp9_F_contig8827:845..9181622930934.208956-CDS-Ecto-sp9_F_contig8827:845..918Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 846..918 -
1692278955.8838415-CDS-Ecto-sp9_F_contig8827:845..9181692278955.8838415-CDS-Ecto-sp9_F_contig8827:845..918Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 846..918 -
1622930934.2266371-CDS-Ecto-sp9_F_contig8827:1149..12291622930934.2266371-CDS-Ecto-sp9_F_contig8827:1149..1229Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 1150..1229 -
1692278955.898777-CDS-Ecto-sp9_F_contig8827:1149..12291692278955.898777-CDS-Ecto-sp9_F_contig8827:1149..1229Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 1150..1229 -
1622930934.2444322-CDS-Ecto-sp9_F_contig8827:1547..16981622930934.2444322-CDS-Ecto-sp9_F_contig8827:1547..1698Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 1548..1698 -
1692278955.9220102-CDS-Ecto-sp9_F_contig8827:1547..16981692278955.9220102-CDS-Ecto-sp9_F_contig8827:1547..1698Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 1548..1698 -
1622930934.269821-CDS-Ecto-sp9_F_contig8827:1988..20681622930934.269821-CDS-Ecto-sp9_F_contig8827:1988..2068Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 1989..2068 -
1692278955.9343467-CDS-Ecto-sp9_F_contig8827:1988..20681692278955.9343467-CDS-Ecto-sp9_F_contig8827:1988..2068Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 1989..2068 -
1622930934.32035-CDS-Ecto-sp9_F_contig8827:2421..24661622930934.32035-CDS-Ecto-sp9_F_contig8827:2421..2466Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 2422..2466 -
1692278955.9449718-CDS-Ecto-sp9_F_contig8827:2421..24661692278955.9449718-CDS-Ecto-sp9_F_contig8827:2421..2466Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 2422..2466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8827.17008.1

>prot_Ecto-sp9_F_contig8827.17008.1 ID=prot_Ecto-sp9_F_contig8827.17008.1|Name=mRNA_Ecto-sp9_F_contig8827.17008.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=143bp
ARAEELRRQLEDALQEVRERQREADSSSVEVQSLRSERDDLMVILSAREG
QVDDLETALEAARRGTAAGEAATAEATARAEELRRQLEDALQEVRERQRE
ADSSSVELQSLRTERDGLRVTLSAAEGRAGQAVAKVGQLEGQA
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mRNA from alignment at Ecto-sp9_F_contig8827:846..2466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8827.17008.1 ID=mRNA_Ecto-sp9_F_contig8827.17008.1|Name=mRNA_Ecto-sp9_F_contig8827.17008.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1621bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8827:846..2466- (Ectocarpus species9 EcSCA_722f female)
GCTAGGGCAGAGGAGCTGCGGCGCCAGCTGGAGGACGCGTTGCAGGTGTG
TGTTTGTGTGTGTATTATTTGGCAGGCAGCTTATTGTTATAGTTGTGGTG
TGTGAGGTGAATTTCAATTCAGCGCCTTGGGCAGACGGAGGTGCAAATGA
CGGGGGCATTATTTGGTCCTGCCGCAGCTGACGTGCTGTTTTGTGACTAG
GATGAAGAATTCACTCTTCTGTGGGCTTGGTCAAGGCGAAACAGAAAACT
GACGCTTTTACGGTGAGGTGTGACAGTTTTCAGGCCATGCAGTATTTCCT
GTTGTTATTGTTATTTTCCCCGTTGGTTTGGATTCGGTCCCTTGCTTGTT
GACTCGCTTCGCCCAATGTTTGCTTCGGCTGCACCATTGTCTTCACAGGA
GGTAAGGGAGAGGCAGCGTGAGGCCGATTCGTCGTCGGTGGAAGTGCAGT
CTCTTCGATCGGAGAGGGATGACCTGATGTGAGCAAAGCATGTGGGGGGA
GAGGGAGGTATCCAGGAGCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTATGTTATTGCTGTCGTTGTCGTTGCTGCTGCTGCTGCTGCTGCTATTG
CTGTTGTGATTGCTGCTGCTGCTATTGCTGTTGTGATTGCTGCTGCTGTT
GTTGTTGTTGTTGTTGTTGTTACGTTCACGATGCTGATATTGCTCGCTCT
CGTTGTTGCCGTCGTTGTCCTTGTCTGATACAATGGCACCCTTCTCTCGT
TCGTCTGTCGACTTCTAGGGTCATCCTCTCCGCAAGAGAGGGCCAGGTGG
ACGATCTCGAGACGGCACTGGAGGCCGCGCGAAGGGGAACCGCGGCCGGA
GAGGCGGCCACTGCCGAGGCTACGGCTAGGGCGGAGGAGCTGCGGCGGCA
GCTGGAGGACGCGTTGCAGGTGTGCGTGTGCATCGTTGGCGTACGGTGAA
TTGCAATACAGCCCCGTGGGCAGACGGAGGTGCAACGGACGGGGGCATTA
TTTGGTCCTGCCGCAGCTGACGTGCTGTTTTGTGACTAGGATGAAGAATT
CACTCTTCTGTGGGCTTGGTCAAGGCGAAACAGAAAACTGACGCTTTTAC
GGTGAGGTGTGACAGTTTTCAGGCCATGCAGTATTTCCGGTTGTTGTTGT
TGTCTTCCCCGTTGGTTTGGATTCGGTCCCTTGCTTGTTGACTCGCTTTA
TCCAATGTTTGCTTCGGCTGCACCGTTGCCTATTCAGGAGGTAAGGGAGA
GGCAGCGTGAGGCCGATTCGTCGTCGGTGGAATTGCAGTCTCTTCGAACG
GAGCGGGATGGCCTGAGGTGAGCAAGCATGTGGGGGGAGAGGGAAGTATC
CACGAACGCCGTTGTGGTTGTTTTGTCCTTGCTGCTGCTGTTACGTTTAC
GATGTTGATATTATTGCTCGTTCTCGTTGTTGCTATCGTTGTCGTTGTCA
CCACTTTTGTTACCTCTGGTACTGATACAATGTCACCCTTCTCTCATTTG
CCTGTTGGCTTCTTTAACTCTTTCGCCTGTTGGCTTCTTGTTCTCTAGGG
TCACCCTCTCCGCAGCAGAGGGCCGAGCGGGGCAGGCGGTGGCCAAGGTC
GGGCAGCTCGAGGGCCAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8827:846..2466-

>mRNA_Ecto-sp9_F_contig8827.17008.1 ID=mRNA_Ecto-sp9_F_contig8827.17008.1|Name=mRNA_Ecto-sp9_F_contig8827.17008.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=858bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8827:846..2466- (Ectocarpus species9 EcSCA_722f female)
GCTAGGGCAGAGGAGCTGCGGCGCCAGCTGGAGGACGCGTTGCAGGCTAG
GGCAGAGGAGCTGCGGCGCCAGCTGGAGGACGCGTTGCAGGAGGTAAGGG
AGAGGCAGCGTGAGGCCGATTCGTCGTCGGTGGAAGTGCAGTCTCTTCGA
TCGGAGAGGGATGACCTGATGAGGTAAGGGAGAGGCAGCGTGAGGCCGAT
TCGTCGTCGGTGGAAGTGCAGTCTCTTCGATCGGAGAGGGATGACCTGAT
GGTCATCCTCTCCGCAAGAGAGGGCCAGGTGGACGATCTCGAGACGGCAC
TGGAGGCCGCGCGAAGGGGAACCGCGGCCGGAGAGGCGGCCACTGCCGAG
GCTACGGCTAGGGCGGAGGAGCTGCGGCGGCAGCTGGAGGACGCGTTGCA
GGGTCATCCTCTCCGCAAGAGAGGGCCAGGTGGACGATCTCGAGACGGCA
CTGGAGGCCGCGCGAAGGGGAACCGCGGCCGGAGAGGCGGCCACTGCCGA
GGCTACGGCTAGGGCGGAGGAGCTGCGGCGGCAGCTGGAGGACGCGTTGC
AGGAGGTAAGGGAGAGGCAGCGTGAGGCCGATTCGTCGTCGGTGGAATTG
CAGTCTCTTCGAACGGAGCGGGATGGCCTGAGGAGGTAAGGGAGAGGCAG
CGTGAGGCCGATTCGTCGTCGGTGGAATTGCAGTCTCTTCGAACGGAGCG
GGATGGCCTGAGGGTCACCCTCTCCGCAGCAGAGGGCCGAGCGGGGCAGG
CGGTGGCCAAGGTCGGGCAGCTCGAGGGCCAGGCGGGTCACCCTCTCCGC
AGCAGAGGGCCGAGCGGGGCAGGCGGTGGCCAAGGTCGGGCAGCTCGAGG
GCCAGGCG
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