mRNA_Ecto-sp9_F_contig8823.17004.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8823.17004.1
Unique NamemRNA_Ecto-sp9_F_contig8823.17004.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8823.17004.1 vs.
Match: GCP_C_terminal (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L542_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.000e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:  513 KQMVRSRSAVYVNELLTELEFNHFFERQETWRVERRAPHV 632
            K+MVRSRSAVYVNELLTELEFNHFFERQETWRVERRAP V
Sbjct:  183 KEMVRSRSAVYVNELLTELEFNHFFERQETWRVERRAPRV 222
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BLAST of mRNA_Ecto-sp9_F_contig8823.17004.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.720e-13
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 3 
Query:  513 KQMVRSRSAVYVNELLTELEFNHFFERQETWRVERRAPHV 632
            K+MVRSRSAVYVNELLTELEFNHFFERQETWRVERRAP V
Sbjct: 1477 KEMVRSRSAVYVNELLTELEFNHFFERQETWRVERRAPRV 1516
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8823.17004.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
GCP_C_terminal1.000e-1495.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.720e-1395.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8823contigEcto-sp9_F_contig8823:762..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size524
Cds size117
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8823.17004.1prot_Ecto-sp9_F_contig8823.17004.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8823 1280..1396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.8060043-UTR-Ecto-sp9_F_contig8823:761..8471622930933.8060043-UTR-Ecto-sp9_F_contig8823:761..847Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8823 762..847 +
1692278955.6898267-UTR-Ecto-sp9_F_contig8823:761..8471692278955.6898267-UTR-Ecto-sp9_F_contig8823:761..847Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8823 762..847 +
1622930933.8367682-UTR-Ecto-sp9_F_contig8823:1396..17171622930933.8367682-UTR-Ecto-sp9_F_contig8823:1396..1717Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8823 1397..1717 +
1692278955.7241616-UTR-Ecto-sp9_F_contig8823:1396..17171692278955.7241616-UTR-Ecto-sp9_F_contig8823:1396..1717Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8823 1397..1717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.8235624-CDS-Ecto-sp9_F_contig8823:1279..13961622930933.8235624-CDS-Ecto-sp9_F_contig8823:1279..1396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8823 1280..1396 +
1692278955.7047815-CDS-Ecto-sp9_F_contig8823:1279..13961692278955.7047815-CDS-Ecto-sp9_F_contig8823:1279..1396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8823 1280..1396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8823.17004.1

>prot_Ecto-sp9_F_contig8823.17004.1 ID=prot_Ecto-sp9_F_contig8823.17004.1|Name=mRNA_Ecto-sp9_F_contig8823.17004.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=39bp
MVRSRSAVYVNELLTELEFNHFFERQETWRVERRAPHV*
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mRNA from alignment at Ecto-sp9_F_contig8823:762..1717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8823.17004.1 ID=mRNA_Ecto-sp9_F_contig8823.17004.1|Name=mRNA_Ecto-sp9_F_contig8823.17004.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=956bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8823:762..1717+ (Ectocarpus species9 EcSCA_722f female)
CGTGCAGGGAGTCTTTGAAGAAGCTGGACGAGCTGTGGGATGACCTGGTG
TCGGCGCTTGGCTTCGTGATTCCGGTGCTCAAGGAGGTCGGTCCGCTATG
TTATTGAGCTCTTTCCTCGCTGAAACCGCTGCTGCTGCTGCTGCTGCTGC
TGCTGTTATTGCTGTTGTTGGCACACCGTAGAGTTGTTGCAATTTGTAAA
GTATCTTCCGTACCCCCAACCCCTTGTCCTTTGTCCCGTACATTCGTTGT
TTACCCGAACGATCGGTCCGCTGCGTCGAACCTGGCATTGCTAATAACAA
CTCCCGATGACGGTGTGTTGTTGGCCGATTCGTCCCTCGGCGCTCGTGCC
GCATCACTCTTATGCCTCTATAGGTTTGTTTCTACGTGTGACGTTGACAA
TGCGTCGACCTGCTCCTTTCTTCTCCCGTCCCTCCTGCCCCCCGCCCGGT
TCCATTTGTGCCTCGGTTTTTTTGCGTCATGGTATGCAAACGGTACGGTA
CGGGCGGCTTAAAAACAGATGGTACGGTCCAGGAGCGCCGTCTACGTCAA
CGAGCTGCTCACGGAGCTCGAGTTCAACCACTTCTTTGAGCGTCAAGAGA
CGTGGAGGGTGGAGAGAAGAGCCCCCCATGTCTAGTCCAAGGGCTCTAGC
TTTTAGCACTTATCCTGACCGCTCGAAGTGAAAGGCTACAATAACCTTGC
TTGGGTTGCGTTGGAAACTTGTCCGGTTGTGTGAGAAGTGTCGTTACAAC
GAGCGTGCGAGGGCTGCCAGGGTGGCCTCTTTGACTCGGATTTCGCCACG
GCAGCTGGGTTAGCTGGGTTAGCCGCCGCGTATTCTTGGTTGGTTCCCGC
GAGCGGTGGATCGTGATGCGTTTCGTGGGCCATGGTGACAGGGGCAGTCG
GCGGGGTGCGTGCCTGGACTGTGATGAGAGACAATCCCAAGAAAGAAAAG
CGGCCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8823:762..1717+

>mRNA_Ecto-sp9_F_contig8823.17004.1 ID=mRNA_Ecto-sp9_F_contig8823.17004.1|Name=mRNA_Ecto-sp9_F_contig8823.17004.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8823:762..1717+ (Ectocarpus species9 EcSCA_722f female)
ATGGTACGGTCCAGGAGCGCCGTCTACGTCAACGAGCTGCTCACGGAGCT
CGAGTTCAACCACTTCTTTGAGCGTCAAGAGACGTGGAGGGTGGAGAGAA
GAGCCCCCCATGTCTAGATGGTACGGTCCAGGAGCGCCGTCTACGTCAAC
GAGCTGCTCACGGAGCTCGAGTTCAACCACTTCTTTGAGCGTCAAGAGAC
GTGGAGGGTGGAGAGAAGAGCCCCCCATGTCTAG
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