mRNA_Ecto-sp9_F_contig8818.17001.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8818.17001.1
Unique NamemRNA_Ecto-sp9_F_contig8818.17001.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8818.17001.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU33_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 7.980e-55
Identity = 149/173 (86.13%), Postives = 150/173 (86.71%), Query Frame = 1 
Query:    1 RRGSMNPASRETLLAQCPAIFKALSDVMSIAAKEAASSXXXXXXGDAAETSDKKPAKTNSASSSAMLKAKRLKPILGCLSATVSADEGVGALSALASEARSLKASLAAVGEASASLAMQLQCGQVAQALDAIATAGGKEENXXXXXXXXXXXXXXXXXXXKSSPKRKAAAEVD 519
            RRGSMNPASRETLLAQCPAIFKALSDVMSIAAKEAA S      GDAAET DKKPAK N+ASSSAMLKAKRLKPILGCLSA VSADEGVGALSALASEARSLKASLAAVGEASASLAMQLQCGQVAQALDAIA        XXXXXXXXXXXXXXXXXXX     RKAAAEVD
Sbjct: 1166 RRGSMNPASRETLLAQCPAIFKALSDVMSIAAKEAALSASTKATGDAAETGDKKPAKANAASSSAMLKAKRLKPILGCLSAAVSADEGVGALSALASEARSLKASLAAVGEASASLAMQLQCGQVAQALDAIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAAAEVD 1338
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8818.17001.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.980e-5586.13protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU33... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8818contigEcto-sp9_F_contig8818:76..1235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue3.4e-49
Seed eggNOG ortholog2880.D8LU33
Preferred nameMYBBP1A
KEGG koko:K02331,ko:K11836
GOsGO:0000182,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003712,GO:0003714,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006091,GO:0006139,GO:0006259,GO:0006351,GO:0006355,GO:0006356,GO:0006360,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0007154,GO:0007165,GO:0007623,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0009058,GO:0009059,GO:0009267,GO:0009303,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0015980,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022900,GO:0022904,GO:0023052,GO:0031074,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032501,GO:0032774,GO:0032922,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035556,GO:0040029,GO:0042149,GO:0042564,GO:0042594,GO:0042790,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045333,GO:0045787,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045943,GO:0046483,GO:0046872,GO:0046914,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0051726,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070888,GO:0071156,GO:0071158,GO:0071496,GO:0071704,GO:0071897,GO:0072331,GO:0072332,GO:0080090,GO:0090068,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097659,GO:0098781,GO:0140097,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901836,GO:1901838,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000209,GO:2000210,GO:2001141
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsKOG1926@1,KOG1926@2759
EC2.7.7.7,3.4.19.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03036,ko03400,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size1160
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8818.17001.1prot_Ecto-sp9_F_contig8818.17001.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8818 88..615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.3969111-UTR-Ecto-sp9_F_contig8818:75..871622930933.3969111-UTR-Ecto-sp9_F_contig8818:75..87Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8818 76..87 +
1692278955.444497-UTR-Ecto-sp9_F_contig8818:75..871692278955.444497-UTR-Ecto-sp9_F_contig8818:75..87Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8818 76..87 +
1622930933.4295893-UTR-Ecto-sp9_F_contig8818:615..12351622930933.4295893-UTR-Ecto-sp9_F_contig8818:615..1235Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8818 616..1235 +
1692278955.4676766-UTR-Ecto-sp9_F_contig8818:615..12351692278955.4676766-UTR-Ecto-sp9_F_contig8818:615..1235Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8818 616..1235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.4123657-CDS-Ecto-sp9_F_contig8818:87..6151622930933.4123657-CDS-Ecto-sp9_F_contig8818:87..615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8818 88..615 +
1692278955.4580646-CDS-Ecto-sp9_F_contig8818:87..6151692278955.4580646-CDS-Ecto-sp9_F_contig8818:87..615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8818 88..615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8818.17001.1

>prot_Ecto-sp9_F_contig8818.17001.1 ID=prot_Ecto-sp9_F_contig8818.17001.1|Name=mRNA_Ecto-sp9_F_contig8818.17001.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=176bp
MNPASRETLLAQCPAIFKALSDVMSIAAKEAASSAATAATGDAAETSDKK
PAKTNSASSSAMLKAKRLKPILGCLSATVSADEGVGALSALASEARSLKA
SLAAVGEASASLAMQLQCGQVAQALDAIATAGGKEENGAAETVSEEGGSK
KKRKMDKSSPKRKAAAEVDYPRHRS*
back to top

mRNA from alignment at Ecto-sp9_F_contig8818:76..1235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8818.17001.1 ID=mRNA_Ecto-sp9_F_contig8818.17001.1|Name=mRNA_Ecto-sp9_F_contig8818.17001.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1160bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8818:76..1235+ (Ectocarpus species9 EcSCA_722f female)
AGACGGGGATCGATGAACCCAGCTTCTCGCGAAACCCTGCTGGCCCAGTG
TCCCGCGATCTTCAAGGCATTGAGTGACGTCATGTCCATCGCCGCCAAGG
AAGCGGCCTCGTCCGCCGCCACAGCAGCAACAGGGGATGCGGCCGAAACC
AGCGACAAGAAACCGGCTAAAACAAACTCGGCATCCTCCTCCGCCATGCT
CAAGGCGAAACGCCTGAAGCCTATCTTGGGTTGCCTCTCGGCTACCGTCA
GCGCCGACGAGGGTGTCGGGGCTCTCTCCGCCCTGGCCTCCGAGGCGAGG
TCGCTAAAGGCATCGCTCGCCGCGGTAGGGGAGGCCAGCGCTAGCCTGGC
GATGCAGCTGCAGTGCGGACAGGTGGCGCAAGCGCTGGACGCGATAGCTA
CAGCAGGAGGAAAGGAGGAAAACGGAGCGGCAGAAACGGTCTCCGAAGAG
GGCGGCAGCAAGAAGAAGAGGAAAATGGACAAGTCGTCGCCGAAGCGCAA
GGCGGCCGCCGAGGTTGACTATCCCCGACACCGAAGTTGACAGTCCCGTG
AAGGCGGCGGCGGCGGCCGACGACGACGAGAGCAAGCTCAAGAGCAGCAG
CAGCAAGAAGAAGAAGAAGCGTAGGGAGAGCAAGGAAGGCTGAAGGCGGA
GATCGCGCAATCAGTCCGACGTTGTGGTAGCCGTGGCGCGTACTAGCCAA
CTGCTGTCGTTGCTCTTACCTTGTCTGGGTTTCTGTTTTTTTGCTATCTG
TCGGTCGAGGTCTACTGTACCTGTTGTTGTCGTGTCGCCGCGTCGGAGGG
GCAGTTCAACAAGTGCTCCATCTGTCGTGGTATGCATACTGCGGCACTGC
TGTGTATGGCTATGAGAGGTCTTGGTGGGGCTTGGTGCTGCAGCAGAGGC
GAGAGAGAGAGAGAGAGAGAGCATTTTATATGGTGTTGCTGCTGTGGTGT
AGTTGACAATAGAGGCGTGTCCTCGCGAACCAGGCCCGATTTCGTAAGTA
GCGTGTGCGAGCAACTTGTTGCTTTATGATCTAACGAACCGGGATTTTTT
TGCTTCTCACAACAAAGTCATGCCAAACAACGTGGAAAGTGATCATTTCG
TGTGTAGGAGTACGCAATCAAATATTTTAACTTGGTGATCGACGACGGAA
AAGAACGGCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8818:76..1235+

>mRNA_Ecto-sp9_F_contig8818.17001.1 ID=mRNA_Ecto-sp9_F_contig8818.17001.1|Name=mRNA_Ecto-sp9_F_contig8818.17001.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8818:76..1235+ (Ectocarpus species9 EcSCA_722f female)
ATGAACCCAGCTTCTCGCGAAACCCTGCTGGCCCAGTGTCCCGCGATCTT
CAAGGCATTGAGTGACGTCATGTCCATCGCCGCCAAGGAAGCGGCCTCGT
CCGCCGCCACAGCAGCAACAGGGGATGCGGCCGAAACCAGCGACAAGAAA
CCGGCTAAAACAAACTCGGCATCCTCCTCCGCCATGCTCAAGGCGAAACG
CCTGAAGCCTATCTTGGGTTGCCTCTCGGCTACCGTCAGCGCCGACGAGG
GTGTCGGGGCTCTCTCCGCCCTGGCCTCCGAGGCGAGGTCGCTAAAGGCA
TCGCTCGCCGCGGTAGGGGAGGCCAGCGCTAGCCTGGCGATGCAGCTGCA
GTGCGGACAGGTGGCGCAAGCGCTGGACGCGATAGCTACAGCAGGAGGAA
AGGAGGAAAACGGAGCGGCAGAAACGGTCTCCGAAGAGGGCGGCAGCAAG
AAGAAGAGGAAAATGGACAAGTCGTCGCCGAAGCGCAAGGCGGCCGCCGA
GGTTGACTATCCCCGACACCGAAGTTGAATGAACCCAGCTTCTCGCGAAA
CCCTGCTGGCCCAGTGTCCCGCGATCTTCAAGGCATTGAGTGACGTCATG
TCCATCGCCGCCAAGGAAGCGGCCTCGTCCGCCGCCACAGCAGCAACAGG
GGATGCGGCCGAAACCAGCGACAAGAAACCGGCTAAAACAAACTCGGCAT
CCTCCTCCGCCATGCTCAAGGCGAAACGCCTGAAGCCTATCTTGGGTTGC
CTCTCGGCTACCGTCAGCGCCGACGAGGGTGTCGGGGCTCTCTCCGCCCT
GGCCTCCGAGGCGAGGTCGCTAAAGGCATCGCTCGCCGCGGTAGGGGAGG
CCAGCGCTAGCCTGGCGATGCAGCTGCAGTGCGGACAGGTGGCGCAAGCG
CTGGACGCGATAGCTACAGCAGGAGGAAAGGAGGAAAACGGAGCGGCAGA
AACGGTCTCCGAAGAGGGCGGCAGCAAGAAGAAGAGGAAAATGGACAAGT
CGTCGCCGAAGCGCAAGGCGGCCGCCGAGGTTGACTATCCCCGACACCGA
AGTTGA
back to top