mRNA_Ecto-sp9_F_contig8802.16990.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK58_ECTSI) HSP 1 Score: 514 bits (1325), Expect = 9.670e-175 Identity = 255/258 (98.84%), Postives = 255/258 (98.84%), Query Frame = 1
Query: 61 PMVHSPRLRAKSMDSGGRKGKSKRGKGPGTAVMGKADRIGRMLQSLSRAVTRISKDLLVVTLGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVCNYDLCAECDEEVDTKCEDGHPLTPYRVTFSTEDAEESPAPGTTPATGGTSLSPRRSPVRERGGGGCARHVSPAVGGS 834
P VHSPRLRAKSMDSGGRKGKSKRGKGPGTAVMGKADRIGRMLQSLSRAVTRISKDLLVVTLGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVCNYDLCAECDEEV TKCEDGHPLTPYRVTFSTEDAEESPAPGTTPATGGTSLSPRRSPVRERGGG CARHVSPAVGGS
Sbjct: 457 PTVHSPRLRAKSMDSGGRKGKSKRGKGPGTAVMGKADRIGRMLQSLSRAVTRISKDLLVVTLGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVCNYDLCAECDEEVGTKCEDGHPLTPYRVTFSTEDAEESPAPGTTPATGGTSLSPRRSPVRERGGGRCARHVSPAVGGS 714
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Match: Histone (acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE) HSP 1 Score: 508 bits (1309), Expect = 6.380e-162 Identity = 250/256 (97.66%), Postives = 253/256 (98.83%), Query Frame = 1
Query: 61 PMVHSPRLRAKSMDSGGRKGKSKRGKGPGTAVMGKADRIGRMLQSLSRAVTRISKDLLVVTLGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVCNYDLCAECDEEVDTKCEDGHPLTPYRVTFSTEDAEESPAPGTTPATGGTSLSPRRSPVRERGGGGCARHVSPAVG 828
P VHSPRLRAKSMDSGGRKGK+KRGKGPGTAVMGKADRIGRMLQSLSRAVTRISKDLLVV+LGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCG+CNYDLCAECDEEVDTKCEDGHPLTPYRVTFSTEDAEESPAPGTTPATGGTSLSPRRS VRERGGGGC RHVSPAVG
Sbjct: 2310 PTVHSPRLRAKSMDSGGRKGKTKRGKGPGTAVMGKADRIGRMLQSLSRAVTRISKDLLVVSLGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGICNYDLCAECDEEVDTKCEDGHPLTPYRVTFSTEDAEESPAPGTTPATGGTSLSPRRSLVRERGGGGCVRHVSPAVG 2565
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Match: Histone (acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI9_9STRA) HSP 1 Score: 182 bits (461), Expect = 6.090e-53 Identity = 89/158 (56.33%), Postives = 110/158 (69.62%), Query Frame = 1
Query: 217 ISKDLLVVTLGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVCNYDLCAECDEEVDTKCEDGHPLTPYRVTF 690
+ +DLLVV+L D P A A A A L+A C DPDP +SRALVD+RHTFLEMCQFRHYQFD+LRRAKHSSAMVLYHLHRPE+ SLNPFC RC +P+R +R+HC C+Y+LC+ C+ +++ +C + HPLTPYRVTF
Sbjct: 1 MKQDLLVVSLAPHDAPL----ADAAWDAAAAAHCAALDAV------------TCRDPDPALSRALVDSRHTFLEMCQFRHYQFDSLRRAKHSSAMVLYHLHRPEAHSLNPFCMRCNKPIRALRHHCSQCSYELCSACERDMNGQCLEMHPLTPYRVTF 142
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Match: Histone (acetyltransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FAN2_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.040e-31 Identity = 71/170 (41.76%), Postives = 99/170 (58.24%), Query Frame = 1
Query: 184 MLQSLSRAVTRISKDLLVVTLGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPD--PPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVC-NYDLCAECDEEVDTKCEDGHPLTPYRV 684
+++ +S++V ++ +DLLV+ L R S + E +EAW + L D DPD ISR LVD RHT LEM FRH QFD+LRRAKH+++++LYHLH PE RSL+ +CS C + +R+HC C N+D+C++C K HPLTPY V
Sbjct: 85 LIRDVSKSVLKLKEDLLVLHL------------RPESSSSTEERARGIEAWAQYTTGSLPLVDDASDPDGRSEISRPLVDGRHTMLEMSMFRHIQFDSLRRAKHATSLLLYHLHFPE-RSLDAYCSTCAARLVGLRWHCATCTNFDVCSDCALTPGKKSVHNHPLTPYHV 241
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Match: Histone (acetyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM02_AURAN) HSP 1 Score: 128 bits (321), Expect = 9.970e-30 Identity = 72/172 (41.86%), Postives = 99/172 (57.56%), Query Frame = 1
Query: 181 RMLQSLSRAVTRISKDLLVVTLGKPDQPAKPPPARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVC-NYDLCAECDEEVDTKCEDGHPLTPYRVTFS 693
R+L L+ +V ++ V+ L QP + PP G+ +G + D D D ++ ALVD+RHTFLEMCQF HYQFDTLRRAKHSS M+LYHLH P + SL CS C R V+ VR+HC C +Y++C +C+ + + H LTP+R+TF+
Sbjct: 463 RLLPELASSVHKMKDSQFVLYL----QPDERPPTEPGAPARPRKP-------------KGPSSIDDPDADTRVTNALVDSRHTFLEMCQFWHYQFDTLRRAKHSSIMLLYHLHNPHADSLAILCSNCSREVKRVRWHCATCIDYNICRDCERQ--GRQVHHHSLTPFRITFA 615
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Match: Histone (acetyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SR03_9ARCH) HSP 1 Score: 125 bits (314), Expect = 2.400e-29 Identity = 76/206 (36.89%), Postives = 107/206 (51.94%), Query Frame = 1
Query: 175 IGRMLQSLSRAVTRISKDLLVVTLGKPDQPAKPP-PARAGSGMTKEAML----AELEAWHASSGIEGTLT---------------PDCHDPDPPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVC-NYDLCAECDEEVDTKCE-------------DGHPLTPYRVTF 690
+ ++ LS++V R+S DL VV A+ P P S +A+L + S+G + +L PD DPDP + L+D+R+TFLE CQ+RH QFDTLRRAK+SS M+LY+LH P R+ P C C+ ++ +R+HC C +YD+C C VDT + HPLTPYRV+F
Sbjct: 251 LNSLITDLSKSVHRMSDDLFVVRFHDLSSTAETPAPVVVESKPVDKAVLDNHQQKRNRGRPSNGSQQSLRVEWSEACLSHLAKLQPDTSDPDPIMRSPLMDSRYTFLETCQYRHCQFDTLRRAKYSSLMILYYLHNPYDRTCRPMCKMCQGSIQHMRWHCDQCPDYDICHTCKMSVDTGDDASRMQGDEVNCVAHSHPLTPYRVSF 456
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Match: Histone (acetyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1L7_9STRA) HSP 1 Score: 117 bits (293), Expect = 7.960e-26 Identity = 64/142 (45.07%), Postives = 84/142 (59.15%), Query Frame = 1
Query: 277 PARAGSGMTKEAMLAELEAWHASSGIEGTLTPDCHDPDPPI--SRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVC-NYDLCAECDEEVDTKCEDGHPLTPYRVTFS 693
P AGS + L L + G + DPD + S L+D+RHTFLEMCQF HYQFD+LRRAKHS+ M+LYHLH P + SL C+ C R +R VR+HC C ++++C C+ E H LTP+R+TFS
Sbjct: 802 PELAGSVHRMKESLFVLYLQDGRADASGEI----RDPDAGLRLSCPLLDSRHTFLEMCQFWHYQFDSLRRAKHSTVMLLYHLHVPRAESLGISCAACAREIRRVRWHCATCVDFNICRACERE--RGAAHRHALTPFRITFS 937
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Match: Histone (acetyltransferase n=4 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIU7_9STRA) HSP 1 Score: 115 bits (289), Expect = 2.750e-25 Identity = 70/186 (37.63%), Postives = 94/186 (50.54%), Query Frame = 1
Query: 184 MLQSLSRAVTRISKDLLVVTLGKPD--------QPAKPPPARAGSG----MTKEAMLAELE--------------AWHASSGIEGTLTPDCH-----------DPDPPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVC-NYDLCAEC 627
++ LS+ + R DL V+ L PD Q A + A +G T A +A + A H G++ L+P C DPDP + D+RHTFLE+CQFRHYQFD+LRRAKHSS M+LYHL P S+S P C+ C P+ +R+HC C ++DLC C
Sbjct: 802 IVAELSKRMQRQYDDLFVIKLAPPDLQQQQHHYQHASAGESSANAGNQTSSTATASVASFKKPRGRVALCVKRTPAMHLHGGLK-ELSPACRAMLQQLRADTSDPDPVLHSPATDSRHTFLELCQFRHYQFDSLRRAKHSSLMLLYHLQHPLSKSCRPCCAHCDEPIHTLRWHCDACPDFDLCGTC 986
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Match: Histone (acetyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6P2_9STRA) HSP 1 Score: 108 bits (270), Expect = 8.800e-23 Identity = 58/118 (49.15%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 373 DCHDPDPPI-----SRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVCN-YDLCAEC--DEEVDTKCEDGHPLTPYRVTFSTED 702
D DPD + S L++AR TFLE+CQF+HYQFDTLRRAK+SSAM+LYHLH E L P C +C V VR+HC C+ D C +C E + H LTPYR+T+S ++
Sbjct: 941 DTSDPDLLLGLGFGSTPLLNARQTFLEVCQFQHYQFDTLRRAKYSSAMLLYHLHNREECDLTPVCRQCGERVVGVRWHCSSCSDVDFCTKCYTTGEAEKAPVHDHQLTPYRITYSEDE 1058
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Match: Histone (acetyltransferase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9K0_9STRA) HSP 1 Score: 103 bits (257), Expect = 4.700e-21 Identity = 62/154 (40.26%), Postives = 88/154 (57.14%), Query Frame = 1
Query: 184 MLQSLSRAVTRISKDLLVVTLGKPDQPAKPPPARAGSGMTKEAMLAE----LEAWHASSGIEGTLTPDCHDPD-PPISRALVDARHTFLEMCQFRHYQFDTLRRAKHSSAMVLYHLHRPESRSLNPFCSRCRRPVRFVRYHCGVC-NYDLCAEC 627
+++ L ++V ++ +D+LV L QP + LAE LE W + L D DPD +SR L+D RHT LE+ FRH QFDTLRRAKHS++M+LY+LH P+ RS +CS C ++ +R+HC C N+D+C EC
Sbjct: 1128 LMRDLRKSVHKLKEDILVFHL----QPEE------------VECLAERQRGLEQWSKYTSGSQELVCDLSDPDVETMSRPLLDGRHTMLEISMFRHLQFDTLRRAKHSTSMLLYYLHFPQ-RSFCAYCSNCSSQLQNLRWHCATCANFDICHEC 1264 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8802.16990.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8802.16990.1 >prot_Ecto-sp9_F_contig8802.16990.1 ID=prot_Ecto-sp9_F_contig8802.16990.1|Name=mRNA_Ecto-sp9_F_contig8802.16990.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=288bp GSSSGRSTVGGGSGGGGGGGPMVHSPRLRAKSMDSGGRKGKSKRGKGPGTback to top mRNA from alignment at Ecto-sp9_F_contig8802:2054..4427+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8802.16990.1 ID=mRNA_Ecto-sp9_F_contig8802.16990.1|Name=mRNA_Ecto-sp9_F_contig8802.16990.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2374bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8802:2054..4427+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8802:2054..4427+ >mRNA_Ecto-sp9_F_contig8802.16990.1 ID=mRNA_Ecto-sp9_F_contig8802.16990.1|Name=mRNA_Ecto-sp9_F_contig8802.16990.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1728bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8802:2054..4427+ (Ectocarpus species9 EcSCA_722f female)back to top |