mRNA_Ecto-sp9_F_contig88.16978.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig88.16978.1
Unique NamemRNA_Ecto-sp9_F_contig88.16978.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Match: Protein (ARV n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH4_ECTSI)

HSP 1 Score: 496 bits (1278), Expect = 1.850e-170
Identity = 385/425 (90.59%), Postives = 386/425 (90.82%), Query Frame = 3 
Query:   39 MAVGSSAETVSMKGSASLAEQXXXXXXXXXXXARPFVCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEHACFAAGAVLFATSRVRTAAAXXXXXXXXXXXXXQTGRRSTRSTGTINGGRQEEDRDEYGGDGRSAADRRDDDEWRSSGDVGGTGGLGEGQPQRRXXXXXXXXXXXXXXXYESSSSYSLPPPRPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAKMYMAVVYPLFFRLLAAFVMIWDRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAGLASKMAARAVLCLWFGSDPRTLRML 1313
            MAVGSSAET+SMKGSASLAEQXXXXXXXXXXXARPFVCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VEHACFAAGAVLFATSRVR AA  XXXXXXXXXXXXQTGRRSTRSTGTINGGRQEED DEYG             EWRSSGDVGGT           XXXXXXXXXXXXXXXYESSSSYSLPPPRPDS      XXXXXXXXXXX   XXXXXXXXXXXRAAKMYMAVVYPLFFRLLAAFVMIWDRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAGLASKMAARAVLCLWFGSDPRTLRML
Sbjct:    1 MAVGSSAETMSMKGSASLAEQXXXXXXXXXXXARPFVCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEHACFAAGAVLFATSRVRAAA--XXXXXXXXXXXXQTGRRSTRSTGTINGGRQEEDWDEYGXXXXXXXXXXXXXEWRSSGDVGGTXXXXXXXXXXXXXXXXXXXXXXXXXXYESSSSYSLPPPRPDSSSTIPSXXXXXXXXXXXPLCXXXXXXXXXXXRAAKMYMAVVYPLFFRLLAAFVMIWDRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAGLASKMAARAVLCLWFGSDPRTLRML 423
[Close]
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Match: Protein (ARV (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNP5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.050e-23
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 3 
Query:  147 VCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALD 404
            +CV CGR ++ +FREY+KGNIRL RC +C++VADKYIE+E VLIAID+ LHR+  YRHLLFN   +  H     +  + + +  LD
Sbjct:   16 ICVVCGRSLSHVFREYSKGNIRLSRCDHCKNVADKYIEYELVLIAIDMVLHRISVYRHLLFNRLEYQEHGVPRPIVMIAIAILCLD 101
[Close]
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Match: Protein (ARV n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836DLE2_9ROSI)

HSP 1 Score: 101 bits (251), Expect = 5.960e-21
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 3 
Query:  150 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAH 410
            CVECG P+  LF +Y+ GNIRL RC  C++VAD+YIE EF++I+IDL LH+ +AYRHLLFN+    T +F G LW+       LDA+
Sbjct:   16 CVECGFPIKTLFVQYSPGNIRLMRCENCKAVADEYIECEFMIISIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAY 102
[Close]
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Match: Protein (ARV n=7 Tax=Populus TaxID=3689 RepID=A0A3N7FYG6_POPTR)

HSP 1 Score: 100 bits (249), Expect = 8.350e-21
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 3 
Query:  150 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAH 410
            CVECG P+  LF +Y+ GNIRL RC  C++VAD+YIE EF++I IDL LH+ +AYRHLLFN+    T +F G LW+       LDA+
Sbjct:    5 CVECGFPIKTLFVQYSPGNIRLMRCENCKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAY 91
[Close]
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Match: Protein (ARV n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MPP1_RHIMU)

HSP 1 Score: 99.0 bits (245), Expect = 8.720e-21
Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:  150 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAH 410
            CV+CG  +  LF +Y+ GNIRL +C  C++VAD+YIE EF++I IDL LH+ QAYRHLL+N+    T +F+G LW+  +G   LDA+
Sbjct:    6 CVKCGFRIKTLFVQYSPGNIRLMKCENCKAVADEYIECEFMIILIDLILHKPQAYRHLLYNVLFQETVNFQGLLWKSTIGFLVLDAY 92
[Close]
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Match: Protein (ARV n=9 Tax=Populus TaxID=3689 RepID=A0A3N7G147_POPTR)

HSP 1 Score: 100 bits (249), Expect = 1.850e-20
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 3 
Query:  150 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAH 410
            CVECG P+  LF +Y+ GNIRL RC  C++VAD+YIE EF++I IDL LH+ +AYRHLLFN+    T +F G LW+       LDA+
Sbjct:    5 CVECGFPIKTLFVQYSPGNIRLMRCENCKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAY 91
[Close]
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Match: Protein (ARV n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPQ8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.250e-20
Identity = 44/92 (47.83%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:  147 VCVECGRPVAL-LFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRH 419
            +C+ECG+PV   L+REY+K NIRL RC +C +VAD+ IE+E VL+ +DLALHR+ A+RH+LFN +P +   F  +LW++ + +  +D H+++
Sbjct:   45 LCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKY 135
[Close]
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Match: Protein (ARV n=12 Tax=Glomeraceae TaxID=36751 RepID=A0A2I1G244_9GLOM)

HSP 1 Score: 97.4 bits (241), Expect = 1.080e-19
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 3 
Query:  150 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLR 416
            CVECG PV  L+ EY+KGNIRL  C  C+  ADKY+E +FV+I ID+ LH+ Q YRHLLFN   +  H     +++LG+ +   D +++
Sbjct:    4 CVECGAPVTNLYTEYSKGNIRLTPCEKCKKFADKYVEHDFVIIFIDMLLHKPQVYRHLLFNRLEYRDHGIDPNVFKLGILLILFDVYIK 92
[Close]
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Match: Protein (ARV n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GYY3_9FUNG)

HSP 1 Score: 98.6 bits (244), Expect = 1.090e-19
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 3 
Query:  147 VCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEA 440
            +CVECG  V+ L+ EY+KGNIRL  C +C+ +ADKY+E +FV+I +D+ LH+   YRHLLFN  P+        +++LGV +   D +++   L  EA
Sbjct:    3 ICVECGAAVSSLYTEYSKGNIRLTYCEHCKKLADKYVEHDFVIIFVDMVLHKKPVYRHLLFNRLPYRDLGIDPNVFKLGVLLILFDVYIKWFRLEQEA 100
[Close]
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Match: protein (ARV 2 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI0012461EB1)

HSP 1 Score: 96.7 bits (239), Expect = 5.810e-19
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 3 
Query:  150 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLR 416
            CVECG  +  LF +Y+ GNIRL +C  C++VAD+YIE  F+++ IDL LH+ +AYRHLLFN+       F G LW+  VG   LDA+ R
Sbjct:    8 CVECGFRIKTLFVQYSPGNIRLMKCENCKAVADEYIECNFLILLIDLILHKPKAYRHLLFNVLKQGAPHFEGLLWKSTVGYLLLDAYRR 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig88.16978.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein1.850e-17090.59ARV n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH4_ECT... [more]
Protein3.050e-2352.33ARV (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 Tax... [more]
Protein5.960e-2154.02ARV n=1 Tax=Salix suchowensis TaxID=1278906 RepID=... [more]
Protein8.350e-2154.02ARV n=7 Tax=Populus TaxID=3689 RepID=A0A3N7FYG6_PO... [more]
Protein8.720e-2151.72ARV n=1 Tax=Rhizophora mucronata TaxID=61149 RepID... [more]
Protein1.850e-2054.02ARV n=9 Tax=Populus TaxID=3689 RepID=A0A3N7G147_PO... [more]
Protein2.250e-2047.83ARV n=1 Tax=Nannochloropsis gaditana TaxID=72520 R... [more]
Protein1.080e-1947.19ARV n=12 Tax=Glomeraceae TaxID=36751 RepID=A0A2I1G... [more]
Protein1.090e-1943.88ARV n=1 Tax=Lobosporangium transversale TaxID=6457... [more]
protein5.810e-1950.56ARV 2 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig88contigEcto-sp9_F_contig88:9343..13090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score501.1
Seed ortholog evalue5e-139
Seed eggNOG ortholog2880.D8LLH4
KEGG koko:K21848
KEGG TC9.A.19.1
EggNOG free text desc.regulation of plasma membrane sterol distribution
EggNOG OGsCOG5254@1,KOG3134@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArv1 protein
Ec32 orthologEc-00_004620.1
Exons4
Model size1545
Cds size1278
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig88.16978.1prot_Ecto-sp9_F_contig88.16978.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig88 9381..12861 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.862677-UTR-Ecto-sp9_F_contig88:9342..93801622930929.862677-UTR-Ecto-sp9_F_contig88:9342..9380Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig88 9343..9380 +
1692278953.6448948-UTR-Ecto-sp9_F_contig88:9342..93801692278953.6448948-UTR-Ecto-sp9_F_contig88:9342..9380Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig88 9343..9380 +
1622930929.9415932-UTR-Ecto-sp9_F_contig88:12861..130901622930929.9415932-UTR-Ecto-sp9_F_contig88:12861..13090Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig88 12862..13090 +
1692278953.699423-UTR-Ecto-sp9_F_contig88:12861..130901692278953.699423-UTR-Ecto-sp9_F_contig88:12861..13090Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig88 12862..13090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.8775485-CDS-Ecto-sp9_F_contig88:9380..95661622930929.8775485-CDS-Ecto-sp9_F_contig88:9380..9566Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 9381..9566 +
1692278953.6570678-CDS-Ecto-sp9_F_contig88:9380..95661692278953.6570678-CDS-Ecto-sp9_F_contig88:9380..9566Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 9381..9566 +
1622930929.8894422-CDS-Ecto-sp9_F_contig88:10766..109041622930929.8894422-CDS-Ecto-sp9_F_contig88:10766..10904Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 10767..10904 +
1692278953.6664772-CDS-Ecto-sp9_F_contig88:10766..109041692278953.6664772-CDS-Ecto-sp9_F_contig88:10766..10904Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 10767..10904 +
1622930929.9083486-CDS-Ecto-sp9_F_contig88:11468..122091622930929.9083486-CDS-Ecto-sp9_F_contig88:11468..12209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 11469..12209 +
1692278953.6758652-CDS-Ecto-sp9_F_contig88:11468..122091692278953.6758652-CDS-Ecto-sp9_F_contig88:11468..12209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 11469..12209 +
1622930929.922975-CDS-Ecto-sp9_F_contig88:12648..128611622930929.922975-CDS-Ecto-sp9_F_contig88:12648..12861Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 12649..12861 +
1692278953.685929-CDS-Ecto-sp9_F_contig88:12648..128611692278953.685929-CDS-Ecto-sp9_F_contig88:12648..12861Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 12649..12861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig88.16978.1

>prot_Ecto-sp9_F_contig88.16978.1 ID=prot_Ecto-sp9_F_contig88.16978.1|Name=mRNA_Ecto-sp9_F_contig88.16978.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=426bp
MAVGSSAETVSMKGSASLAEQQQQEAAAAAAAARPFVCVECGRPVALLFR
EYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMR
PFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAAAAAAQESTGSVVVAG
DGGGDPFWEAGGLLLAAVVEHACFAAGAVLFATSRVRTAAAAAKAAKARR
NRNRQTGRRSTRSTGTINGGRQEEDRDEYGGDGRSAADRRDDDEWRSSGD
VGGTGGLGEGQPQRRQDRAGEEDGEDGEDGYESSSSYSLPPPRPDSSSTV
PSTAPSSATAAASPLCVGGGGGGGGSSRAAKMYMAVVYPLFFRLLAAFVM
IWDRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAG
LASKMAARAVLCLWFGSDPRTLRML*
back to top

mRNA from alignment at Ecto-sp9_F_contig88:9343..13090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig88.16978.1 ID=mRNA_Ecto-sp9_F_contig88.16978.1|Name=mRNA_Ecto-sp9_F_contig88.16978.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3748bp|location=Sequence derived from alignment at Ecto-sp9_F_contig88:9343..13090+ (Ectocarpus species9 EcSCA_722f female)
CTACTGCTGTGTATGGTGAAGTGCAGTAGTCTGTCAACATGGCGGTTGGA
AGCTCTGCTGAGACTGTGTCTATGAAGGGGAGTGCGAGCTTGGCTGAGCA
GCAGCAGCAGGAGGCGGCGGCGGCAGCGGCAGCCGCCCGACCCTTCGTGT
GTGTAGAGTGCGGTAGACCCGTCGCACTTCTGTTTCGAGAGTACAACAAG
GGCAACATCCGACTGGGACGATGTGTGAGTCTCTACGATAGCTTGATGAT
TGAGTTGCCGGTGCTGCGACCAAGGAACATGGGCACACAAGAGCAAACAG
CAACGGGAGAGACCAAGTCGGTTGGGCCGCATGCGGCGCAATAAGCTCTC
TCGTCTCTCGTGTACAGCAGTCGTGTACATTCGTGTACAGCAGTAGCTCT
GCTAGCTCCTCACGTGCTTGTTCTTTCCATTTTATCTTGTACTTGAAGTA
GCTTTGTACTTTACCGCTAGCGCACACACAGTGCGCATTCGCTACGGCAG
CTGTCTGTCGGCGCTGCGGTTGCGATGATTGCATCGGGCACTTCCTATAC
CACAGCAGTTTGCCGTGTTCTCCACTGTGCAATCTCATGAGAGCCGACGG
CGGTTCGATGCAGGCAATCAAAAACTTTACAATCCAAGCACCAACATCGA
ACTTTGAAGCCCTCAAGTACCAACATGGACCGACGACAGAAGCAATCACT
CGGCACGCAGCAGCTAAAATGGATGTGCATGTACACAGCAGCAGCAGACA
GGCAGACAGGGAACATGCAAGAAGGCCGGAGCTTTTCGCTTCTCGTTTGA
TGACCCCAGCCGGTCCGTTGAATCCGGTGCCCAAAGACGAGTTACCACTA
TGCTCTAGGTGTGTTGTGCGAGGAGCGCAGAACGCAGATTTAACGTCATC
TCCACTATGATTTCATCGCTACTTTTCGGGGGCATCCACGGATAGAGAGA
TGACTCGGTTTGTTTTGCGAAGAGCAAGAGGGAGAGCACACACACCAACA
CCCTCCTGTTCGTCGACAACAGCAGCAACCCGGAATGAACCAGCGATCAG
TACATGCTACAGTAGTTTGAACATTGCACATATTGCTTGCTCAGGCTTTC
CCAAACAACGCCGCCTGGAAGGTGCCTGGCCTTTGTCATGTCGCAAGATC
AACGGCGCCCTCGCCAACCGATGAGTTTCCCCGCTCGATGCGCATGACAC
GTGTGTTATTCGACATATCTCGTTTTGAATCGCCAATGAATACTTGTACC
TACGCCCGCTGGTTGCTTCGTGGGACCAACTACATAGCTTCCGTCGCAAG
CGCACGCATGATCGTGTGGTTTCACCATCTCGCATGCGTGATCGCATGAT
GCCGCGGCTTGCTTGATGCGTGCTCTGTTCCTCGTTTTTTGTTCTCCGCA
CACTCTATCGCTTGCTCCTTGCAGAGCTACTGCCGGTCCGTGGCGGACAA
GTACATCGAGTGGGAGTTCGTCTTGATCGCGATTGACCTGGCCTTACATC
GGGTCCAGGCCTACCGGCACCTACTCTTCAACATGAGGCCGTTCAGCACA
CACAGTTTTCGGGTGCGTGCGGCCAGACAAGCTACCCCAATGTAGCCCGT
TCCTAGAACCCCTCTCCGTTGTTTTGCTCTAGCCAGACCCACGGGCATTC
GCTTCTTCCAAACAACAGCTCAGCTTGTTGTATCAGGACGTGCGCTCGCT
CTTGTTTCGTGCGTTGTAGTTGTCCACATGGCGTTTGTTTTTCCCTTCCC
GTGCTTGAAGTGTGAGCGGCTTCGTCTCGTATCCAACGGGAGTGTATCGA
CGCTCCCCAGGGCGTGCGAGACACGTCAGGTATTGAACCAGTAGCAAAAC
CCAAACCATGACAGCGCATCCACAGATAACTATACGATAGGAACACCGTT
TCTTTCGCCCGCAGCGGGTTATGTTTAGACGGAATCCGCGCCCCTTGATC
AAAAGACGCTCGTGCGTTTGTACCTCGTGCACATGGTCTGTGCCGTGTGA
TCGCGTGCACCACTTGTTCGTTGCCGGCCGGCGTCCACATCGGAACCAGC
CAACACACACCAAACCTTCCAACCGCGCGGAAACAAACACACGCACGCAC
ACACACACACACACACACACACACAGGGGCGGTTGTGGCAGCTGGGGGTA
GGCATGGCAGCCCTCGACGCCCACCTCCGACACACGGCACTGTCCAGCGA
GGCGGCGGCGGCGGCCGCTCAGGAGTCTACGGGGAGCGTTGTTGTGGCCG
GCGACGGGGGCGGGGACCCTTTCTGGGAAGCGGGCGGGCTGCTCCTCGCC
GCGGTGGTCGAGCACGCGTGTTTCGCGGCCGGGGCGGTGCTTTTCGCGAC
GAGCAGGGTGCGCACGGCGGCGGCGGCGGCGAAGGCGGCAAAGGCGCGGC
GAAACCGAAATCGACAAACCGGCCGGCGAAGCACACGGAGCACTGGTACG
ATAAACGGCGGTCGGCAGGAGGAGGACCGGGATGAGTATGGAGGCGACGG
CCGTAGCGCTGCCGATAGAAGGGACGACGACGAGTGGAGAAGTAGTGGTG
ATGTGGGGGGCACCGGTGGGCTGGGGGAGGGACAACCACAAAGACGACAG
GACAGGGCCGGGGAGGAAGACGGAGAAGACGGAGAGGACGGTTACGAGTC
TTCCTCGTCCTATTCGCTGCCCCCGCCACGACCGGATTCTTCCAGCACCG
TTCCATCGACCGCACCGTCTTCTGCGACAGCGGCGGCATCGCCTCTGTGT
GTTGGTGGCGGCGGCGGCGGCGGTGGTTCTTCCCGTGCAGCCAAGATGTA
CATGGCCGTGGTGTACCCCCTGTTTTTCAGACTCCTCGCAGCGTTCGTCA
TGATCTGGGATCGACAGGTTTGGTTTGCCACGTCTTTTGAGATGACTGAC
GCATCCTCATCATCTTGTCCCTACCTCCGGTCATATTTGTCCCGAAAAAC
TGCAAGAATAACATTTTCAGAGCTACATGCAATTCGCGCTACTTAAACTG
CCTGTAGCTCGTCAACCTATGAGATTGCAATTTTGTTGGCTACCGTCAAC
TTCCGTTGCTCCGTAGGAAAGTTCCTGCTCCTGACTCTACAGGACCCGAA
CTGCCCGGGTCAAAGACACTTGACCAATCCCCTCATAGCGCGCAGAGGGA
GCGGAGGACTCCAGAATATCCGTCGTTGATTTCTATTGACTTGTGGACCC
CTCGGGGCNNNNNNNNNNACATATGAAGGTACTGGGTAGAGAGAGATCGG
AACGGTTTTTAATGTGAAGACAACAACAACAACAATCCCCTTATCCCGCG
GTTCAGGTGGCGATCCTGAACACCATCGAGTTGCTAGTGGCCACCATGCA
GTTCGTCGCCCTGTCTGCCGTCGTCGGGGGGCCCGCAGCGGTGAGCGGAA
TGGGGGAGGGGGGCGTCGCCGCCATGTCCGTCTTGGCCGGTCTGGCTTCC
AAGATGGCGGCAAGAGCGGTCCTGTGCCTTTGGTTCGGCAGCGACCCCAG
GACCCTCCGGATGCTGTGACTCGAGGGGCGCCATTCCGGGGCTAACGGGA
CGGAAAACGCCGCACGGCAGTCGAACTATTACGTATTTAGGCATGAACAC
CGGAGGTGCGGAGAGCACATCAGACATCGTGCCCTTACGGTTTACGCCAG
GAACGACTCTGTTTTGTGAATCCTCCTTGGCAAGGAATGCAGGGCTTCGT
GCGTGCCTCGAGCCTGCGTGCTGTTGACCGCGTTTCAGTGGTGTGGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig88:9343..13090+

>mRNA_Ecto-sp9_F_contig88.16978.1 ID=mRNA_Ecto-sp9_F_contig88.16978.1|Name=mRNA_Ecto-sp9_F_contig88.16978.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2556bp|location=Sequence derived from alignment at Ecto-sp9_F_contig88:9343..13090+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGGTTGGAAGCTCTGCTGAGACTGTGTCTATGAAGGGGAGTGCGAG
CTTGGCTGAGCAGCAGCAGCAGGAGGCGGCGGCGGCAGCGGCAGCCGCCC
GACCCTTCGTGTGTGTAGAGTGCGGTAGACCCGTCGCACTTCTGTTTCGA
GAGTACAACAAGGGCAACATCCGACTGGGACGATGTATGGCGGTTGGAAG
CTCTGCTGAGACTGTGTCTATGAAGGGGAGTGCGAGCTTGGCTGAGCAGC
AGCAGCAGGAGGCGGCGGCGGCAGCGGCAGCCGCCCGACCCTTCGTGTGT
GTAGAGTGCGGTAGACCCGTCGCACTTCTGTTTCGAGAGTACAACAAGGG
CAACATCCGACTGGGACGATGTAGCTACTGCCGGTCCGTGGCGGACAAGT
ACATCGAGTGGGAGTTCGTCTTGATCGCGATTGACCTGGCCTTACATCGG
GTCCAGGCCTACCGGCACCTACTCTTCAACATGAGGCCGTTCAGCACACA
CAGTTTTCGGAGCTACTGCCGGTCCGTGGCGGACAAGTACATCGAGTGGG
AGTTCGTCTTGATCGCGATTGACCTGGCCTTACATCGGGTCCAGGCCTAC
CGGCACCTACTCTTCAACATGAGGCCGTTCAGCACACACAGTTTTCGGGG
GCGGTTGTGGCAGCTGGGGGTAGGCATGGCAGCCCTCGACGCCCACCTCC
GACACACGGCACTGTCCAGCGAGGCGGCGGCGGCGGCCGCTCAGGAGTCT
ACGGGGAGCGTTGTTGTGGCCGGCGACGGGGGCGGGGACCCTTTCTGGGA
AGCGGGCGGGCTGCTCCTCGCCGCGGTGGTCGAGCACGCGTGTTTCGCGG
CCGGGGCGGTGCTTTTCGCGACGAGCAGGGTGCGCACGGCGGCGGCGGCG
GCGAAGGCGGCAAAGGCGCGGCGAAACCGAAATCGACAAACCGGCCGGCG
AAGCACACGGAGCACTGGTACGATAAACGGCGGTCGGCAGGAGGAGGACC
GGGATGAGTATGGAGGCGACGGCCGTAGCGCTGCCGATAGAAGGGACGAC
GACGAGTGGAGAAGTAGTGGTGATGTGGGGGGCACCGGTGGGCTGGGGGA
GGGACAACCACAAAGACGACAGGACAGGGCCGGGGAGGAAGACGGAGAAG
ACGGAGAGGACGGTTACGAGTCTTCCTCGTCCTATTCGCTGCCCCCGCCA
CGACCGGATTCTTCCAGCACCGTTCCATCGACCGCACCGTCTTCTGCGAC
AGCGGCGGCATCGCCTCTGTGTGTTGGTGGCGGCGGCGGCGGCGGTGGTT
CTTCCCGTGCAGCCAAGATGTACATGGCCGTGGTGTACCCCCTGTTTTTC
AGACTCCTCGCAGCGTTCGTCATGATCTGGGATCGACAGGGGCGGTTGTG
GCAGCTGGGGGTAGGCATGGCAGCCCTCGACGCCCACCTCCGACACACGG
CACTGTCCAGCGAGGCGGCGGCGGCGGCCGCTCAGGAGTCTACGGGGAGC
GTTGTTGTGGCCGGCGACGGGGGCGGGGACCCTTTCTGGGAAGCGGGCGG
GCTGCTCCTCGCCGCGGTGGTCGAGCACGCGTGTTTCGCGGCCGGGGCGG
TGCTTTTCGCGACGAGCAGGGTGCGCACGGCGGCGGCGGCGGCGAAGGCG
GCAAAGGCGCGGCGAAACCGAAATCGACAAACCGGCCGGCGAAGCACACG
GAGCACTGGTACGATAAACGGCGGTCGGCAGGAGGAGGACCGGGATGAGT
ATGGAGGCGACGGCCGTAGCGCTGCCGATAGAAGGGACGACGACGAGTGG
AGAAGTAGTGGTGATGTGGGGGGCACCGGTGGGCTGGGGGAGGGACAACC
ACAAAGACGACAGGACAGGGCCGGGGAGGAAGACGGAGAAGACGGAGAGG
ACGGTTACGAGTCTTCCTCGTCCTATTCGCTGCCCCCGCCACGACCGGAT
TCTTCCAGCACCGTTCCATCGACCGCACCGTCTTCTGCGACAGCGGCGGC
ATCGCCTCTGTGTGTTGGTGGCGGCGGCGGCGGCGGTGGTTCTTCCCGTG
CAGCCAAGATGTACATGGCCGTGGTGTACCCCCTGTTTTTCAGACTCCTC
GCAGCGTTCGTCATGATCTGGGATCGACAGGTGGCGATCCTGAACACCAT
CGAGTTGCTAGTGGCCACCATGCAGTTCGTCGCCCTGTCTGCCGTCGTCG
GGGGGCCCGCAGCGGTGAGCGGAATGGGGGAGGGGGGCGTCGCCGCCATG
TCCGTCTTGGCCGGTCTGGCTTCCAAGATGGCGGCAAGAGCGGTCCTGTG
CCTTTGGTTCGGCAGCGACCCCAGGACCCTCCGGATGCTGTGAGTGGCGA
TCCTGAACACCATCGAGTTGCTAGTGGCCACCATGCAGTTCGTCGCCCTG
TCTGCCGTCGTCGGGGGGCCCGCAGCGGTGAGCGGAATGGGGGAGGGGGG
CGTCGCCGCCATGTCCGTCTTGGCCGGTCTGGCTTCCAAGATGGCGGCAA
GAGCGGTCCTGTGCCTTTGGTTCGGCAGCGACCCCAGGACCCTCCGGATG
CTGTGA
back to top