mRNA_Ecto-sp9_F_contig8794.16973.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6G0_9PHAE) HSP 1 Score: 410 bits (1055), Expect = 6.340e-142 Identity = 204/213 (95.77%), Postives = 209/213 (98.12%), Query Frame = 1
Query: 1 QAARRSGSRGRSESSAAPNGLHMQVWSNPQAVQDYKDLLDGNAPEDTIDQPSVIIGRGKLGTALASMGMGEDVVLGRGEAIPDSLPCSSGKGEDGENAMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQQSPFGLHCST 639
+AARRS SRGRSESSAAPNGL MQVWSNPQAVQDYKDLLDGNAPEDTIDQPSVIIGRGKLGTALASMGMGEDVVLGRGEAIPDSL CSSG+GEDGE +MLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDK+GGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQ+SPFGLHCST
Sbjct: 57 RAARRSVSRGRSESSAAPNGLRMQVWSNPQAVQDYKDLLDGNAPEDTIDQPSVIIGRGKLGTALASMGMGEDVVLGRGEAIPDSLQCSSGRGEDGETSMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKLGGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQRSPFGLHCST 269
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIC7_9STRA) HSP 1 Score: 197 bits (502), Expect = 2.860e-59 Identity = 101/191 (52.88%), Postives = 129/191 (67.54%), Query Frame = 1
Query: 67 MQVWSNPQAVQDYKDLLDGNAPEDTIDQPSVIIGRGKLGTALASMGMGEDVVLGRGEAIPDSLPCSSGKGEDGENAMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQQSPFGLHCST 639
MQVWS+ +AV+DYK+LL G AP DT D SVIIG GK+GTALA MG+G+DVVL RG+AIP + DGE +FPIYV V E ++ AV+ +CPDDK+ DLVF+ GC+EPLLK G C +QTQA L+++ + R +D +G D GEPK+AG+T+VCGKW GA RL + GL C T
Sbjct: 1 MQVWSDSRAVEDYKNLLAGKAPADTTDCASVIIGAGKVGTALADMGLGDDVVLRRGDAIPAEIT-------DGEGNARSSFPIYVAVRERDLEAVLKACPDDKRADLVFLQGGCVEPLLKRYGACSKDQTQAVLWWTFEAGSARPIDGEVSLGLDSFGEPKVAGQTSVCGKWAGALKGRLARG--GLPCET 182
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Match: Hypothetical (protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2BD26_HEMAN) HSP 1 Score: 184 bits (467), Expect = 3.460e-53 Identity = 95/190 (50.00%), Postives = 125/190 (65.79%), Query Frame = 1
Query: 49 APNGLHMQVWSNPQAVQDYKDLLDGNAPEDTIDQPSVIIG-RGKLGTALASMGMGEDVVLGRGEAIPDSLPCSSGKGEDGENAMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQQS 615
A GL MQVWSN QAVQ+YKD L G+APE T+D P+VI+G G++G+ L GMGED+V+GRG IP +P N ++ FP+YVCVPE+EV +VI SCP +K +DLVF+ G +E LLK G+C E TQA L F++ VG R + + +G D GE K AGET +CGKW A RL+++
Sbjct: 68 AAGGLRMQVWSNEQAVQEYKDYLSGDAPEATVDGPAVIVGGNGRIGSFLREKGMGEDIVVGRGGDIPIEMP----------NVGVE-FPVYVCVPEDEVESVIRSCPKEKVDDLVFVQGGNIEMLLKKYGLCGNENTQAVLNFNIMSVGARPQNLLVDMGPDSFGETKYAGETVICGKWADALLARLERA 246
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Match: Uncharacterized (protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQC7_GUITC) HSP 1 Score: 179 bits (454), Expect = 1.240e-51 Identity = 89/189 (47.09%), Postives = 120/189 (63.49%), Query Frame = 1
Query: 55 NGLHMQVWSNPQAVQDYKDLLDGNAPEDTIDQPSVIIGRGKLGTALASMGMGEDVVLGRGEAIPDSLPCSSGKGEDGENAMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQQSPF 621
+G MQVWSNPQA+++Y+DLL G ++D PSVI+G G++G L G G+DVV+GRG IP+ +G L++FP+YVCVP E+ VI SCP K +DLVF+ G +EP+LK +C E TQ YF++ GGR D++ +GTD GEPK AGET++CGKW GA RL + F
Sbjct: 41 HGWRMQVWSNPQALEEYQDLLSGKEQVASVDTPSVIVGGGRVGEMLRGAGGGDDVVVGRGGQIPEV--------HEG----LESFPVYVCVPTSELENVIRSCPQSKLDDLVFVQDGMIEPILKKYALCGNENTQMLPYFTLFSKGGRPQDSLVDLGTDAYGEPKYAGETSICGKWAGALKQRLDRLNF 217
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Match: Hypothetical (protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EQY8_9CRYP) HSP 1 Score: 177 bits (449), Expect = 5.000e-51 Identity = 92/194 (47.42%), Postives = 121/194 (62.37%), Query Frame = 1
Query: 31 RSESSAAPNGLHMQVWSNPQAVQDYKDLLDGNAPEDTIDQPSVIIGRGKLGTALASMGMGEDVVLGRGEAIPDSLPCSSGKGEDGENAMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQQ 612
RS SS G MQVWSNPQA+++Y+DLL G ++D PSVI+G G++G L G G+DVV+GRG IP++ +G L +FPIYVCVP E+ VI SCP K +DLVF+ G +EP+LK +C E TQ YF++ GGR D++ +GTD GE K AGET++CGKW GA RL +
Sbjct: 24 RSCSSRPRPGWRMQVWSNPQALEEYQDLLSGKQQVASVDVPSVIVGGGRVGEMLRGAGGGDDVVVGRGGKIPET--------HEG----LDSFPIYVCVPNSELEGVIRSCPSSKLDDLVFVQDGMIEPILKKYALCGNENTQMLPYFTLFSKGGRPQDSLVDLGTDAFGEAKYAGETSICGKWAGALKQRLDR 205
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N4Z7_9CRYP) HSP 1 Score: 167 bits (424), Expect = 9.150e-50 Identity = 85/156 (54.49%), Postives = 109/156 (69.87%), Query Frame = 1
Query: 106 KDLLDGNAPEDTIDQPSVIIGRGKLGTALASMGMGEDVVLGRGEAIPDSLPCSSGKGEDGENAMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAMTVIGTDGRGEPKLAGETAVC 573
KDLL+G AP+DT+D PSVIIG+G++G L +G G+DV + RG +IP L +DG + +FPIYVCVP ++V VI SCP DK +DLVF+ +G +EPLLK +C +QTQATLYF+V K G R D +T +G D RGEPK AGETAVC
Sbjct: 1 KDLLEGKAPKDTVDGPSVIIGKGRIGQTLMDLGKGDDVFVERGGSIPMEL-------DDG----VTSFPIYVCVPNDDVEGVIKSCPKDKLDDLVFVQNGMMEPLLKKYALCSVDQTQATLYFTVFKAGSRPQDCLTDLGLDARGEPKYAGETAVC 145
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Match: Uncharacterized (protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1I1_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.810e-38 Identity = 90/187 (48.13%), Postives = 110/187 (58.82%), Query Frame = 1
Query: 70 QVWSNPQAVQDYKDLLDGNAPEDTIDQPSVIIGRGKLGTALASMG-MGED-VVLGRGEAIPDSLPCSSGKGEDGENAMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVG----GRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQQ 612
Q+ S+ Q +DY ++G D DQ SVIIG+GKLG AL G MGED ++LGR + IP L S+G L FPIYVCVPE EV +VI CP +K+ DLVFM S CLE LLK G+ + TQ YFS+ G GR V TDG EPK AG+T VCG W+GA A RL++
Sbjct: 77 QIRSDQQHTEDYFRFIEGKEEPDKCDQASVIIGKGKLGQALVQWGGMGEDDLLLGRDDCIPTVLTVSNG-------CTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFGLPVEGRV--QYDVSKTDG--EPKFAGQTVVCGTWRGAVAERLRK 252
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6V6_9STRA) HSP 1 Score: 142 bits (358), Expect = 2.190e-37 Identity = 77/183 (42.08%), Postives = 108/183 (59.02%), Query Frame = 1
Query: 73 VWSNPQAVQDYKDLLDGNAPEDTIDQPSVIIGRG--KLGTALASMGMGEDVVLGRGEAIPDSLPCSSGKGEDGENAMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQQS 615
VWSNPQAV+DY++ LDG + + DQPSV + +L LAS G G+DVV+ + +P S+ DG L +FPIY CV ++ +I CP+ K+ DLVF+ +G +EPLLK G+C TQA YF + G+ +D + +G D +G KLA T+VCGKW GA RL ++
Sbjct: 46 VWSNPQAVEDYQNYLDGVEEQVSKDQPSVFVAGSDRRLAEGLASFGFGKDVVISSIKELPASV--------DG----LTDFPIYACVAPMDLEQLILDCPEAKRPDLVFLQTGMMEPLLKRYGLCGKRNTQALCYFEFHPMSGKPIDYVMNLGLDQQGNDKLAAVTSVCGKWAGAMTQRLTRN 216
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM19_CHOCR) HSP 1 Score: 124 bits (312), Expect = 6.920e-31 Identity = 70/192 (36.46%), Postives = 105/192 (54.69%), Query Frame = 1
Query: 61 LHMQVWSNPQAVQDYKDLLDG-NAPEDTIDQPSVIIGRGKLGTALASMGMGEDVVLGRGEAIPDSLPCSSGKGEDGENAMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQQSPFGLHC 633
L MQ WS+P Q+Y D L+ N E D S I+G G++G L G G+D+V+ RG+ IP+ P P+Y+C +++ +I++CP+ KK+DLVF+ +G LE +L+ M E T+A LYF++ K+ +D +T E G TAVCGKW+GAF R+ ++ GL C
Sbjct: 37 LRMQTWSDPAVTQEYFDFLNNVNQRELMTDCTSTIVGSGRIGNFLREHGTGQDLVIRRGQKIPEDAPG----------------PVYLCTRNDDLEEIIENCPESKKDDLVFIQNGMLERMLRRHDM--SENTRANLYFAISKMDADPIDGIT--------ETNPEGLTAVCGKWEGAFQERILKA--GLTC 200
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Match: Hypothetical (protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AQN1_9STRA) HSP 1 Score: 125 bits (315), Expect = 6.970e-31 Identity = 78/218 (35.78%), Postives = 116/218 (53.21%), Query Frame = 1
Query: 37 ESSAAPNGLHM-QVWSNPQAVQDYKDLLDGNAPEDTI--DQPSVIIGRGK-------LGTALASMGMGEDVVLGRGEAIPDSLPCSSGKGEDGENAMLQNFPIYVCVPEEEVAAVIDSCPDD---KKEDLVFMSS----GCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQQSPFGLHCST 639
+SS P + WSN QA+++Y+D L+ + + D PS+++ L A+ ++G GEDVV+ G +P + SS +FP+YVCV E+ + +++ P D K+ D+VF S GC+EP+LK RG+ R TQ FS+ G+ D IG D GE K AGE AVCG+W+GAFA RL+++ G+ C T
Sbjct: 34 QSSPRPTNTRLFNTWSNGQAIKEYQDFLESGNQDIPMKDDVPSLVVAPSTGDPKSWDLVAAVIALGAGEDVVIQPGTPLPAEVGGSS------------SFPVYVCVYPSELESFLENLPSDWKAKQSDMVFFSGSKKCGCIEPILKKRGLARDSMTQVLAAFSMPGPTGKPQDLSVKIGVDAVGEDKWAGEAAVCGEWQGAFAERLERN--GIRCKT 237 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8794.16973.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8794.16973.1 >prot_Ecto-sp9_F_contig8794.16973.1 ID=prot_Ecto-sp9_F_contig8794.16973.1|Name=mRNA_Ecto-sp9_F_contig8794.16973.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=213bp QAARRSGSRGRSESSAAPNGLHMQVWSNPQAVQDYKDLLDGNAPEDTIDQback to top mRNA from alignment at Ecto-sp9_F_contig8794:339..5810+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8794.16973.1 ID=mRNA_Ecto-sp9_F_contig8794.16973.1|Name=mRNA_Ecto-sp9_F_contig8794.16973.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5472bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8794:339..5810+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8794:339..5810+ >mRNA_Ecto-sp9_F_contig8794.16973.1 ID=mRNA_Ecto-sp9_F_contig8794.16973.1|Name=mRNA_Ecto-sp9_F_contig8794.16973.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8794:339..5810+ (Ectocarpus species9 EcSCA_722f female)back to top |