mRNA_Ecto-sp9_F_contig8787.16967.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8787.16967.1
Unique NamemRNA_Ecto-sp9_F_contig8787.16967.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C6_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 7.300e-63
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 3 
Query:  453 MASSSAPPASSLGQDIKEFLENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 773
            MASSSAPPASSLGQDIKEFLENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL
Sbjct:    1 MASSSAPPASSLGQDIKEFLENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 107
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BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YB58_HETAK)

HSP 1 Score: 127 bits (318), Expect = 4.910e-32
Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 3 
Query:  495 DIKEFLENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 773
            DIK FLE+E D E+EEEISRNPY LKSWWRYL  K+ A+ KTR +++ERALKFLP S+KLW+ YL+ER  AVE K + DPA ++V NA+ERAL
Sbjct:   26 DIKSFLESEADFEYEEEISRNPYALKSWWRYLDHKKNARPKTRYVVYERALKFLPGSFKLWHSYLKERTLAVEDKSVLDPAREVVANAYERAL 118
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BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA78_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.310e-31
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 3 
Query:  471 PPASSLGQDIKEFLENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 773
            P     G++++  L +  D E+E EISR P+RLK+W RYL AK    R+ RNI+HERALKFLP SYKLW+QYL ER +AVEGKCITDPACQIVVN  ERAL
Sbjct:    2 PSEDEAGEEVQALLADATDFEYETEISRAPFRLKNWVRYLAAKTSTNRRARNILHERALKFLPTSYKLWHQYLTERLSAVEGKCITDPACQIVVNTFERAL 102
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BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Match: XAB2 ((Fragment) n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=I6M4B7_KRYMA)

HSP 1 Score: 100 bits (249), Expect = 5.590e-23
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 3 
Query:  525 DIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 773
            D+ +EEEI RNPY +K W RY+  K+   + T N+I+ERAL+ LP SYKLW  YLRERR  V+GKCIT+PA + V N HERAL
Sbjct:   13 DLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALRELPGSYKLWYNYLRERRKQVKGKCITEPAFEEVNNCHERAL 95
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BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Match: SYF1 ((Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LQ32_9TELE)

HSP 1 Score: 101 bits (252), Expect = 9.340e-23
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 3 
Query:  525 DIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 773
            D+ +EEEI RNPY +K W RY+  K+   + T N+I+ERALK LP SYKLW  YLRERR  V+GKCITDP  + V N HERAL
Sbjct:   46 DLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCITDPTYEEVNNCHERAL 128
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BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Match: Pre-mRNA-splicing (factor SYF1-like n=2 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151NRD7_ALLMI)

HSP 1 Score: 98.6 bits (244), Expect = 1.440e-22
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 3 
Query:  519 EKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 773
            E+D+++EEEI RNP+ +K W RY+  K+ A R   N+++ERALK LP SYKLW  YL++RR  V+ +C+TDPA + V N HERAL
Sbjct:   19 EEDLQYEEEILRNPFSVKCWMRYIEFKQSAPRHALNLLYERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPAYEEVNNCHERAL 103
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BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Match: XPA (binding protein 2 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672MZQ1_SINGR)

HSP 1 Score: 105 bits (262), Expect = 3.790e-22
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 3 
Query:  510 LENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 773
            L+ + D+ +EEEI RNPY +K W RY+  K+ A++   N+I+ERALK LP SYKLW  YLRERR  V+GKC+TDPA + V N HERAL
Sbjct:    4 LQEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERAL 91
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BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9SJ12_LITCT)

HSP 1 Score: 97.1 bits (240), Expect = 4.510e-22
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 3 
Query:  510 LENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 773
            +  E D+++EEEI RNPY +K W RY+  K+ A     N+I+ERALK LP SYKLW  YL++RR  V+ +C+TDPA + V N HERAL
Sbjct:    5 MAEEDDLQYEEEILRNPYSVKCWMRYIEFKQSASAHALNLIYERALKELPGSYKLWYAYLKQRRKQVKRRCLTDPAFEEVNNCHERAL 92
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BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Match: XPA (binding protein 2 n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673G278_9TELE)

HSP 1 Score: 103 bits (258), Expect = 9.240e-22
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 3 
Query:  504 EFLENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 773
            + L  + D+ +EEEI RNPY +K W RY+  K+ A++   N+I+ERALK LP SYKLW  YLRERR  V+GKC+TDPA + V N HERAL
Sbjct:    9 DVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERAL 98
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BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Match: XPA (binding protein 2 n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1DYQ7_CYPCA)

HSP 1 Score: 103 bits (258), Expect = 9.750e-22
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 3 
Query:  504 EFLENEKDIEFEEEISRNPYRLKSWWRYLLAKEGAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVVNAHERAL 773
            + L  + D+ +EEEI RNPY +K W RY+  K+ A++   N+I+ERALK LP SYKLW  YLRERR  V+GKC+TDPA + V N HERAL
Sbjct:   12 DVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERAL 101
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8787.16967.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized7.300e-63100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical4.910e-3265.59protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Uncharacterized2.310e-3163.37protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
XAB25.590e-2359.04(Fragment) n=1 Tax=Kryptolebias marmoratus TaxID=3... [more]
SYF19.340e-2360.24(Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=18... [more]
Pre-mRNA-splicing1.440e-2254.12factor SYF1-like n=2 Tax=Alligator mississippiensi... [more]
XPA3.790e-2257.95binding protein 2 n=1 Tax=Sinocyclocheilus grahami... [more]
Uncharacterized4.510e-2253.41protein n=1 Tax=Lithobates catesbeianus TaxID=8400... [more]
XPA9.240e-2256.67binding protein 2 n=1 Tax=Sinocyclocheilus rhinoce... [more]
XPA9.750e-2256.67binding protein 2 n=3 Tax=Cyprinus carpio TaxID=79... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8787contigEcto-sp9_F_contig8787:4094..5730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.1e-53
Seed eggNOG ortholog2880.D7G3C6
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size775
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8787.16967.1prot_Ecto-sp9_F_contig8787.16967.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8787 4546..5730 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.0015297-UTR-Ecto-sp9_F_contig8787:4093..45451622930928.0015297-UTR-Ecto-sp9_F_contig8787:4093..4545Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8787 4094..4545 +
1692278952.7438068-UTR-Ecto-sp9_F_contig8787:4093..45451692278952.7438068-UTR-Ecto-sp9_F_contig8787:4093..4545Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8787 4094..4545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.0155733-CDS-Ecto-sp9_F_contig8787:4545..47571622930928.0155733-CDS-Ecto-sp9_F_contig8787:4545..4757Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8787 4546..4757 +
1692278952.7580833-CDS-Ecto-sp9_F_contig8787:4545..47571692278952.7580833-CDS-Ecto-sp9_F_contig8787:4545..4757Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8787 4546..4757 +
1622930928.0316362-CDS-Ecto-sp9_F_contig8787:5621..57301622930928.0316362-CDS-Ecto-sp9_F_contig8787:5621..5730Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8787 5622..5730 +
1692278952.7743747-CDS-Ecto-sp9_F_contig8787:5621..57301692278952.7743747-CDS-Ecto-sp9_F_contig8787:5621..5730Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8787 5622..5730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8787.16967.1

>prot_Ecto-sp9_F_contig8787.16967.1 ID=prot_Ecto-sp9_F_contig8787.16967.1|Name=mRNA_Ecto-sp9_F_contig8787.16967.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=107bp
MASSSAPPASSLGQDIKEFLENEKDIEFEEEISRNPYRLKSWWRYLLAKE
GAKRKTRNIIHERALKFLPNSYKLWNQYLRERRAAVEGKCITDPACQIVV
NAHERAL
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mRNA from alignment at Ecto-sp9_F_contig8787:4094..5730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8787.16967.1 ID=mRNA_Ecto-sp9_F_contig8787.16967.1|Name=mRNA_Ecto-sp9_F_contig8787.16967.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1637bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8787:4094..5730+ (Ectocarpus species9 EcSCA_722f female)
CCTGCGTGCCCTTATCTCTGTCTTCGCCCCCGCCGACAACATCGCCAACA
GTAGCTCCTCTGTTGCAACGCACAAGGCTCGGTTACTGCTTCCCATAGGA
TCGTGAGGCGCTTGGTTGGAGTGCCTGCGTTTTGTTTTGAGTCTCAACAA
TCCCCACTCGAGGAGCGGCGGACAACGGCCAAGCAAGGCTGTGTGCTAAA
CGAGAGCGCTACAACAGCGACGCGGCCATAGACAGGGGGAAGATTTGGCG
TATGCTTGGAGGAGGACCGGCTCATTTATTGCGACGCATCAAGCTGGGCT
AGAGCTTGTCGAGCGTATTTTTGTTGGAAGGCAGAGGAACGCGGCGGTGG
CTGCTTTCCCCAGGGGCAAGACCAGCAGGCCTACCTGCACTCTCCTGGCG
AGGATAGCAGCTCGCGCGTGTAGCCCTTAGAGCAAGATACACAAGCCGAC
AAATGGCGTCCTCTTCTGCCCCGCCGGCCTCCTCCTTGGGCCAGGACATC
AAGGAGTTCTTGGAGAACGAAAAGGACATCGAATTCGAGGAGGAGATCTC
TCGCAACCCCTACCGGCTCAAGTCCTGGTGGAGGTACCTGCTGGCCAAGG
AGGGCGCGAAGCGCAAGACGCGCAACATCATCCACGAGCGGGCGCTCAAG
TTTCTCCCCAACAGGTAAGCGGCGAGTATGGTGGGAGATGGCGTGTGTCC
TGTCTGTGTTTTTGTGTACGCTTACGGTATGTTTGTGTTTTGTTGTCTAT
ACAAATATCGAGCTGCGAGTCAGGGTCTTTGGGGGGGCGCACTGCTGTAA
GAGTTTGGCACCCAGGTCGTGGGGGTGACTTTGGACTCTCTCTCTGCCGG
CGCACTACTGCTACTGCTGTAGCCTATCGAGCGCCCATCGCCGCATCAGC
GTTGGTAGTAAACGTACTCGGGAAGCTTGCGTAGGACCTGAGAAGGAATA
CGTTTAAGCTGAAAAATAGTAGATAGGGTTCCTGGTGCTTTTCGGTCTCT
CAACGACAGGAAGGCGGTTTTGGGGGGGAGACGTAACCTACACCCTGTTG
AGCTTCTTGTGCTTGTGCTTACAGTAGTCCTCATCTCTCATATCGCAGCA
GTTTATCTGTACTGCTGTAGTGCCCCCTGTTGCTACGGTGGTGCACTGAG
GTGCGTACACGAATACGGCTCATAATTCGCTGCGGCATGCCCGTTCAGAG
GAACGGCACCACCGGCGCACACCTCTTCAAAGTGCATCGTACGTGTTGAT
TGATGAGTGTGGCCAGTTCATCATGCGACATACTCTTATGCTGACGCGTC
CAAACCCTGGTATCCGCAGCAAAACATCAAAACATGCACCAGGCCTTCGG
TTGCCCATTGTGTCATCTCCGGTGTTGGATGTGAAGCGGGATCCGCCCGC
AGACGAAGTCGCGGACAAACCGTTACATCTTTCATCAGCTGCGTTCTCTC
CCCCCGCAAGCACTCACTTTACGCCCACCCGCCGCGCTTTGTGCGCGCGC
GCGAACGATCTTGGTTGGCCGCTAGCAGCTACAAGCTTTGGAACCAGTAC
CTGCGTGAGAGGAGAGCGGCGGTAGAGGGGAAATGCATCACGGACCCAGC
GTGCCAGATCGTGGTCAATGCCCACGAGCGAGCGCTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8787:4094..5730+

>mRNA_Ecto-sp9_F_contig8787.16967.1 ID=mRNA_Ecto-sp9_F_contig8787.16967.1|Name=mRNA_Ecto-sp9_F_contig8787.16967.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8787:4094..5730+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGTCCTCTTCTGCCCCGCCGGCCTCCTCCTTGGGCCAGGACATCAA
GGAGTTCTTGGAGAACGAAAAGGACATCGAATTCGAGGAGGAGATCTCTC
GCAACCCCTACCGGCTCAAGTCCTGGTGGAGGTACCTGCTGGCCAAGGAG
GGCGCGAAGCGCAAGACGCGCAACATCATCCACGAGCGGGCGCTCAAGTT
TCTCCCCAACAGATGGCGTCCTCTTCTGCCCCGCCGGCCTCCTCCTTGGG
CCAGGACATCAAGGAGTTCTTGGAGAACGAAAAGGACATCGAATTCGAGG
AGGAGATCTCTCGCAACCCCTACCGGCTCAAGTCCTGGTGGAGGTACCTG
CTGGCCAAGGAGGGCGCGAAGCGCAAGACGCGCAACATCATCCACGAGCG
GGCGCTCAAGTTTCTCCCCAACAGCTACAAGCTTTGGAACCAGTACCTGC
GTGAGAGGAGAGCGGCGGTAGAGGGGAAATGCATCACGGACCCAGCGTGC
CAGATCGTGGTCAATGCCCACGAGCGAGCGCTGCTACAAGCTTTGGAACC
AGTACCTGCGTGAGAGGAGAGCGGCGGTAGAGGGGAAATGCATCACGGAC
CCAGCGTGCCAGATCGTGGTCAATGCCCACGAGCGAGCGCTG
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