mRNA_Ecto-sp9_F_contig878.16958.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig878.16958.1
Unique NamemRNA_Ecto-sp9_F_contig878.16958.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig878.16958.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.230e-19
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 MLCALLCFVYVKNLGGVTWPADLEYLKFGCRFNMTLEHTRLPQRLA 138
            MLCALL FVYVKNLGGVTW ADLEYL+FGCR NMT EHTRLPQRLA
Sbjct:    1 MLCALLSFVYVKNLGGVTWRADLEYLRFGCRLNMTSEHTRLPQRLA 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig878.16958.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.230e-1989.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig878contigEcto-sp9_F_contig878:15179..15712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-08_003570.1
Exons1
Model size534
Cds size534
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.107602-CDS-Ecto-sp9_F_contig878:15178..157121622930927.107602-CDS-Ecto-sp9_F_contig878:15178..15712Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig878 15179..15712 -
1692278952.2446232-CDS-Ecto-sp9_F_contig878:15178..157121692278952.2446232-CDS-Ecto-sp9_F_contig878:15178..15712Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig878 15179..15712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig878.16958.1prot_Ecto-sp9_F_contig878.16958.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig878 15179..15712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig878.16958.1

>prot_Ecto-sp9_F_contig878.16958.1 ID=prot_Ecto-sp9_F_contig878.16958.1|Name=mRNA_Ecto-sp9_F_contig878.16958.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=178bp
MLCALLCFVYVKNLGGVTWPADLEYLKFGCRFNMTLEHTRLPQRLAALKM
CCHWDHPLALVDLPESLKFLQLSDAFDQPLDEVRFPPGLAYLYLGDNFDQ
PLHDVKWPTNLKVLYLGDSFDHSLGIQEWPEGLESLFLGGNFSGDIDNIV
WPDSLTTIKVGCIPGDFDDIKWPLGLL*
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mRNA from alignment at Ecto-sp9_F_contig878:15179..15712-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig878.16958.1 ID=mRNA_Ecto-sp9_F_contig878.16958.1|Name=mRNA_Ecto-sp9_F_contig878.16958.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=534bp|location=Sequence derived from alignment at Ecto-sp9_F_contig878:15179..15712- (Ectocarpus species9 EcSCA_722f female)
ATGTTGTGTGCGTTGTTGTGCTTCGTGTACGTGAAGAATCTTGGCGGTGT
CACGTGGCCCGCAGATCTCGAGTACCTCAAGTTCGGCTGCAGGTTCAATA
TGACCTTAGAGCACACACGGCTTCCCCAACGACTAGCTGCCTTGAAGATG
TGCTGCCACTGGGATCACCCTCTTGCACTGGTGGACTTACCAGAGTCTTT
GAAATTCCTCCAACTGAGCGATGCTTTCGACCAGCCGCTCGACGAGGTGC
GATTTCCTCCAGGCCTAGCCTATCTCTACCTTGGCGACAACTTCGACCAG
CCTCTGCACGACGTCAAATGGCCGACCAATCTGAAGGTGCTCTACTTGGG
CGATTCGTTCGATCACTCGCTTGGCATCCAAGAATGGCCGGAGGGGTTGG
AGTCCCTCTTCTTGGGGGGAAACTTCTCGGGGGACATTGATAACATCGTC
TGGCCGGACAGCTTGACGACGATCAAAGTTGGCTGTATCCCCGGTGATTT
TGACGACATCAAGTGGCCTTTAGGCCTTCTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig878:15179..15712-

>mRNA_Ecto-sp9_F_contig878.16958.1 ID=mRNA_Ecto-sp9_F_contig878.16958.1|Name=mRNA_Ecto-sp9_F_contig878.16958.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp9_F_contig878:15179..15712- (Ectocarpus species9 EcSCA_722f female)
ATGTTGTGTGCGTTGTTGTGCTTCGTGTACGTGAAGAATCTTGGCGGTGT
CACGTGGCCCGCAGATCTCGAGTACCTCAAGTTCGGCTGCAGGTTCAATA
TGACCTTAGAGCACACACGGCTTCCCCAACGACTAGCTGCCTTGAAGATG
TGCTGCCACTGGGATCACCCTCTTGCACTGGTGGACTTACCAGAGTCTTT
GAAATTCCTCCAACTGAGCGATGCTTTCGACCAGCCGCTCGACGAGGTGC
GATTTCCTCCAGGCCTAGCCTATCTCTACCTTGGCGACAACTTCGACCAG
CCTCTGCACGACGTCAAATGGCCGACCAATCTGAAGGTGCTCTACTTGGG
CGATTCGTTCGATCACTCGCTTGGCATCCAAGAATGGCCGGAGGGGTTGG
AGTCCCTCTTCTTGGGGGGAAACTTCTCGGGGGACATTGATAACATCGTC
TGGCCGGACAGCTTGACGACGATCAAAGTTGGCTGTATCCCCGGTGATTT
TGACGACATCAAGTGGCCTTTAGGCCTTCTCTAGATGTTGTGTGCGTTGT
TGTGCTTCGTGTACGTGAAGAATCTTGGCGGTGTCACGTGGCCCGCAGAT
CTCGAGTACCTCAAGTTCGGCTGCAGGTTCAATATGACCTTAGAGCACAC
ACGGCTTCCCCAACGACTAGCTGCCTTGAAGATGTGCTGCCACTGGGATC
ACCCTCTTGCACTGGTGGACTTACCAGAGTCTTTGAAATTCCTCCAACTG
AGCGATGCTTTCGACCAGCCGCTCGACGAGGTGCGATTTCCTCCAGGCCT
AGCCTATCTCTACCTTGGCGACAACTTCGACCAGCCTCTGCACGACGTCA
AATGGCCGACCAATCTGAAGGTGCTCTACTTGGGCGATTCGTTCGATCAC
TCGCTTGGCATCCAAGAATGGCCGGAGGGGTTGGAGTCCCTCTTCTTGGG
GGGAAACTTCTCGGGGGACATTGATAACATCGTCTGGCCGGACAGCTTGA
CGACGATCAAAGTTGGCTGTATCCCCGGTGATTTTGACGACATCAAGTGG
CCTTTAGGCCTTCTCTAG
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