mRNA_Ecto-sp9_F_contig8778.16957.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8778.16957.1
Unique NamemRNA_Ecto-sp9_F_contig8778.16957.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.420e-20
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1
Query:    1 AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
            AEDVVV+FAADLDGD DLDLL GSYW+DWVRWYENEDGKG FSEA+
Sbjct:   98 AEDVVVIFAADLDGDEDLDLLVGSYWNDWVRWYENEDGKGAFSEAM 143          
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: N/a (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.970e-19
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1
Query:    1 AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
            AEDVVVVFAADLD DGDLDLL G+Y +DWVRWYENEDGKGTFSEAV
Sbjct:   59 AEDVVVVFAADLDDDGDLDLLVGTYVEDWVRWYENEDGKGTFSEAV 104          
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Por_Secre_tail (domain-containing protein n=1 Tax=Aequorivita sp. TaxID=1872390 RepID=A0A2G2CRM7_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 5.220e-10
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:   19 VFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
            VFAAD+DGDGD+D+L+ SY+D+ + WYEN DG+GTFS  +
Sbjct:   92 VFAADIDGDGDIDVLSASYYDNKIAWYENLDGQGTFSNQI 131          
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Por_Secre_tail (domain-containing protein n=1 Tax=Bacteroidetes bacterium RIFOXYA12_FULL_38_20 TaxID=1797368 RepID=A0A1F3PPP5_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.820e-9
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1
Query:   19 VFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTF 126
            V+ +D+DGDGD+D+L+ SYWDD + WYEN DG GTF
Sbjct:  540 VYCSDIDGDGDIDVLSASYWDDEIAWYENTDGTGTF 575          
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Repeat (domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella n=1 Tax=Kordia sp. SMS9 TaxID=2282170 RepID=A0A345H4F5_9FLAO)

HSP 1 Score: 59.7 bits (143), Expect = 3.410e-9
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    1 AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFS 129
            A++   V+ ADLDGDGD+D+L+ SY DD + WYEN DG+GTFS
Sbjct:  544 ADNAQSVYPADLDGDGDMDVLSASYVDDKIAWYENTDGQGTFS 586          
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E2EQD2_9FLAO)

HSP 1 Score: 59.3 bits (142), Expect = 4.660e-9
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   19 VFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
            VF+ D+DGDGD+D+L+ S+WDD + WYEN DG GTF   +
Sbjct:  146 VFSIDIDGDGDMDVLSASWWDDKIAWYENLDGLGTFGPQI 185          
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Por_Secre_tail (domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D4YGV5_9FLAO)

HSP 1 Score: 59.3 bits (142), Expect = 4.660e-9
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   19 VFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
            VF+ D+DGDGD+D+L+ S+WDD + WYEN DG GTF   +
Sbjct:  146 VFSIDIDGDGDMDVLSASWWDDKIAWYENLDGLGTFGPQI 185          
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Fibronectin (type III domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DWC9_THETB)

HSP 1 Score: 58.9 bits (141), Expect = 6.370e-9
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    1 AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTF 126
            A+D   V AAD+DGDGDLDL + SY DD + WYEN DG GTF
Sbjct:  211 ADDARSVIAADIDGDGDLDLASASYSDDKIAWYENTDGAGTF 252          
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Winogradskyella undariae TaxID=1285465 RepID=UPI00156A8EF3)

HSP 1 Score: 58.9 bits (141), Expect = 6.370e-9
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
            A   + VF+ADLDGDGD+D+L+ SY DD + WY+N DG+G FS  +
Sbjct:   86 ANGAISVFSADLDGDGDMDILSASYNDDKIAWYKNLDGEGQFSSEI 131          
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Subsaxibacter sp. CAU 1640 TaxID=2933271 RepID=UPI002004C737)

HSP 1 Score: 58.9 bits (141), Expect = 6.370e-9
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1
Query:   16 VVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTF 126
            +V+A D+DGDGD D++A SYWDD + WYEN DG+G F
Sbjct:  391 IVYADDIDGDGDKDIVAASYWDDKISWYENLDGQGNF 427          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.420e-2086.96protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
N/a2.970e-1989.13n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Por_Secre_tail5.220e-1062.50domain-containing protein n=1 Tax=Aequorivita sp. ... [more]
Por_Secre_tail1.820e-963.89domain-containing protein n=1 Tax=Bacteroidetes ba... [more]
Repeat3.410e-960.47domain in Vibrio, Colwellia, Bradyrhizobium and Sh... [more]
Uncharacterized4.660e-957.50protein (Fragment) n=1 Tax=Flavobacteriaceae bacte... [more]
Por_Secre_tail4.660e-957.50domain-containing protein n=1 Tax=Flavobacteriacea... [more]
Fibronectin6.370e-964.29type III domain-containing protein n=1 Tax=Thecamo... [more]
T9SS6.370e-954.35type A sorting domain-containing protein n=1 Tax=W... [more]
T9SS6.370e-962.16type A sorting domain-containing protein n=1 Tax=S... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8778contigEcto-sp9_F_contig8778:5513..5650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D7FHI8
EggNOG free text desc.Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
EggNOG OGs29QRV@1,2RX97@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.0438612-CDS-Ecto-sp9_F_contig8778:5512..56501622930927.0438612-CDS-Ecto-sp9_F_contig8778:5512..5650Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8778 5513..5650 +
1692278952.2271523-CDS-Ecto-sp9_F_contig8778:5512..56501692278952.2271523-CDS-Ecto-sp9_F_contig8778:5512..5650Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8778 5513..5650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8778.16957.1prot_Ecto-sp9_F_contig8778.16957.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8778 5513..5650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8778.16957.1

>prot_Ecto-sp9_F_contig8778.16957.1 ID=prot_Ecto-sp9_F_contig8778.16957.1|Name=mRNA_Ecto-sp9_F_contig8778.16957.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=46bp
AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV
back to top

mRNA from alignment at Ecto-sp9_F_contig8778:5513..5650+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8778.16957.1 ID=mRNA_Ecto-sp9_F_contig8778.16957.1|Name=mRNA_Ecto-sp9_F_contig8778.16957.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8778:5513..5650+ (Ectocarpus species9 EcSCA_722f female)
GCCGAGGATGTCGTTGTTGTCTTCGCGGCAGACTTGGACGGTGACGGGGA CCTGGACTTGTTGGCGGGATCCTACTGGGATGATTGGGTGAGGTGGTACG AGAACGAGGATGGCAAGGGCACGTTCTCGGAAGCGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8778:5513..5650+

>mRNA_Ecto-sp9_F_contig8778.16957.1 ID=mRNA_Ecto-sp9_F_contig8778.16957.1|Name=mRNA_Ecto-sp9_F_contig8778.16957.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8778:5513..5650+ (Ectocarpus species9 EcSCA_722f female)
GCCGAGGATGTCGTTGTTGTCTTCGCGGCAGACTTGGACGGTGACGGGGA
CCTGGACTTGTTGGCGGGATCCTACTGGGATGATTGGGTGAGGTGGTACG
AGAACGAGGATGGCAAGGGCACGTTCTCGGAAGCGGTGGCCGAGGATGTC
GTTGTTGTCTTCGCGGCAGACTTGGACGGTGACGGGGACCTGGACTTGTT
GGCGGGATCCTACTGGGATGATTGGGTGAGGTGGTACGAGAACGAGGATG
GCAAGGGCACGTTCTCGGAAGCGGTG
back to top