mRNA_Ecto-sp9_F_contig8778.16957.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 4.420e-20 Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1
Query: 1 AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
AEDVVV+FAADLDGD DLDLL GSYW+DWVRWYENEDGKG FSEA+
Sbjct: 98 AEDVVVIFAADLDGDEDLDLLVGSYWNDWVRWYENEDGKGAFSEAM 143
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: N/a (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 2.970e-19 Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1
Query: 1 AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
AEDVVVVFAADLD DGDLDLL G+Y +DWVRWYENEDGKGTFSEAV
Sbjct: 59 AEDVVVVFAADLDDDGDLDLLVGTYVEDWVRWYENEDGKGTFSEAV 104
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Por_Secre_tail (domain-containing protein n=1 Tax=Aequorivita sp. TaxID=1872390 RepID=A0A2G2CRM7_9FLAO) HSP 1 Score: 62.0 bits (149), Expect = 5.220e-10 Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query: 19 VFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
VFAAD+DGDGD+D+L+ SY+D+ + WYEN DG+GTFS +
Sbjct: 92 VFAADIDGDGDIDVLSASYYDNKIAWYENLDGQGTFSNQI 131
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Por_Secre_tail (domain-containing protein n=1 Tax=Bacteroidetes bacterium RIFOXYA12_FULL_38_20 TaxID=1797368 RepID=A0A1F3PPP5_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 1.820e-9 Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1
Query: 19 VFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTF 126
V+ +D+DGDGD+D+L+ SYWDD + WYEN DG GTF
Sbjct: 540 VYCSDIDGDGDIDVLSASYWDDEIAWYENTDGTGTF 575
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Repeat (domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella n=1 Tax=Kordia sp. SMS9 TaxID=2282170 RepID=A0A345H4F5_9FLAO) HSP 1 Score: 59.7 bits (143), Expect = 3.410e-9 Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1
Query: 1 AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFS 129
A++ V+ ADLDGDGD+D+L+ SY DD + WYEN DG+GTFS
Sbjct: 544 ADNAQSVYPADLDGDGDMDVLSASYVDDKIAWYENTDGQGTFS 586
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E2EQD2_9FLAO) HSP 1 Score: 59.3 bits (142), Expect = 4.660e-9 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 19 VFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
VF+ D+DGDGD+D+L+ S+WDD + WYEN DG GTF +
Sbjct: 146 VFSIDIDGDGDMDVLSASWWDDKIAWYENLDGLGTFGPQI 185
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Por_Secre_tail (domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D4YGV5_9FLAO) HSP 1 Score: 59.3 bits (142), Expect = 4.660e-9 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 19 VFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
VF+ D+DGDGD+D+L+ S+WDD + WYEN DG GTF +
Sbjct: 146 VFSIDIDGDGDMDVLSASWWDDKIAWYENLDGLGTFGPQI 185
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: Fibronectin (type III domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DWC9_THETB) HSP 1 Score: 58.9 bits (141), Expect = 6.370e-9 Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1
Query: 1 AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTF 126
A+D V AAD+DGDGDLDL + SY DD + WYEN DG GTF
Sbjct: 211 ADDARSVIAADIDGDGDLDLASASYSDDKIAWYENTDGAGTF 252
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Winogradskyella undariae TaxID=1285465 RepID=UPI00156A8EF3) HSP 1 Score: 58.9 bits (141), Expect = 6.370e-9 Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1
Query: 1 AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAV 138
A + VF+ADLDGDGD+D+L+ SY DD + WY+N DG+G FS +
Sbjct: 86 ANGAISVFSADLDGDGDMDILSASYNDDKIAWYKNLDGEGQFSSEI 131
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Match: T9SS (type A sorting domain-containing protein n=1 Tax=Subsaxibacter sp. CAU 1640 TaxID=2933271 RepID=UPI002004C737) HSP 1 Score: 58.9 bits (141), Expect = 6.370e-9 Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1
Query: 16 VVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTF 126
+V+A D+DGDGD D++A SYWDD + WYEN DG+G F
Sbjct: 391 IVYADDIDGDGDKDIVAASYWDDKISWYENLDGQGNF 427 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8778.16957.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8778.16957.1 >prot_Ecto-sp9_F_contig8778.16957.1 ID=prot_Ecto-sp9_F_contig8778.16957.1|Name=mRNA_Ecto-sp9_F_contig8778.16957.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=46bp AEDVVVVFAADLDGDGDLDLLAGSYWDDWVRWYENEDGKGTFSEAVback to top mRNA from alignment at Ecto-sp9_F_contig8778:5513..5650+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8778.16957.1 ID=mRNA_Ecto-sp9_F_contig8778.16957.1|Name=mRNA_Ecto-sp9_F_contig8778.16957.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8778:5513..5650+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8778:5513..5650+ >mRNA_Ecto-sp9_F_contig8778.16957.1 ID=mRNA_Ecto-sp9_F_contig8778.16957.1|Name=mRNA_Ecto-sp9_F_contig8778.16957.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8778:5513..5650+ (Ectocarpus species9 EcSCA_722f female)back to top |