mRNA_Ecto-sp9_F_contig8774.16951.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8774.16951.1
Unique NamemRNA_Ecto-sp9_F_contig8774.16951.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8774.16951.1 vs.
Match: SET (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS4_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 1.380e-90
Identity = 135/144 (93.75%), Postives = 136/144 (94.44%), Query Frame = 1 
Query:    1 ELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRSPPAPPRRAVRSARSKTGGSGSGTADPCSGGGYSSDTIYGDSRDREEMVSGAWVCPKRACCGNGRVLPPLSTAGRGGAAGGEAQLGGTQLGVRPH 432
            ELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRSPPAPPRRAVRSA S+TGGSGSGTADPCSGGG S DTIYGD RDREEMVSGAWVCPKR CCG GRVLPPLSTAGRGGAAGGEAQLGGTQLGV  H
Sbjct:   57 ELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRSPPAPPRRAVRSAGSRTGGSGSGTADPCSGGGCSIDTIYGDIRDREEMVSGAWVCPKRGCCGKGRVLPPLSTAGRGGAAGGEAQLGGTQLGVWRH 200
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BLAST of mRNA_Ecto-sp9_F_contig8774.16951.1 vs.
Match: SET (and MYND domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR7_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 4.560e-89
Identity = 139/147 (94.56%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:    1 ELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRSPPAPPRRAVRSARSKTGGSGSGTADPCSGGGYSSDTIYGDSRDREEMVSGAWVCPKRACCGNGRVLPPLSTAGRGGAAGGEAQLGGTQLGVRPHGWG 441
            ELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRSPPAPPRRAVRSARSKTGGSGS TADPCSGGGYSSDTIYG+SRDREEMVSGAWVCPKRACCGNGRVLPPLSTAGRGGAAGGEAQL      VRPHGWG
Sbjct:  256 ELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRSPPAPPRRAVRSARSKTGGSGSDTADPCSGGGYSSDTIYGESRDREEMVSGAWVCPKRACCGNGRVLPPLSTAGRGGAAGGEAQLE-----VRPHGWG 397
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BLAST of mRNA_Ecto-sp9_F_contig8774.16951.1 vs.
Match: MYND-type (zinc finger protein samB n=1 Tax=Aspergillus ellipticus CBS 707.79 TaxID=1448320 RepID=A0A319DF21_9EURO)

HSP 1 Score: 53.1 bits (126), Expect = 2.450e-5
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 ELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRC 141
            EL + A+  +P G Q+FISY+D   P+PVRQ  LR  ++F C C +C
Sbjct:  223 ELYIKALRPIPKGDQIFISYIDATNPYPVRQTELRERYYFTCKCTKC 269
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8774.16951.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
SET1.380e-9093.75domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SET4.560e-8994.56and MYND domain containing 3 n=1 Tax=Ectocarpus si... [more]
MYND-type2.450e-546.81zinc finger protein samB n=1 Tax=Aspergillus ellip... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8774contigEcto-sp9_F_contig8774:2824..3728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.4
Seed ortholog evalue1.5e-74
Seed eggNOG ortholog2880.D7FUR7
KEGG koko:K11426
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.4894156-CDS-Ecto-sp9_F_contig8774:2824..32091622930926.4894156-CDS-Ecto-sp9_F_contig8774:2824..3209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8774 2825..3209 -
1692278952.0443537-CDS-Ecto-sp9_F_contig8774:2824..32091692278952.0443537-CDS-Ecto-sp9_F_contig8774:2824..3209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8774 2825..3209 -
1622930926.5068836-CDS-Ecto-sp9_F_contig8774:3672..37281622930926.5068836-CDS-Ecto-sp9_F_contig8774:3672..3728Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8774 3673..3728 -
1692278952.0662892-CDS-Ecto-sp9_F_contig8774:3672..37281692278952.0662892-CDS-Ecto-sp9_F_contig8774:3672..3728Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8774 3673..3728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8774.16951.1prot_Ecto-sp9_F_contig8774.16951.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8774 2825..3728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8774.16951.1

>prot_Ecto-sp9_F_contig8774.16951.1 ID=prot_Ecto-sp9_F_contig8774.16951.1|Name=mRNA_Ecto-sp9_F_contig8774.16951.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=147bp
ELCVVAVEDVPAGSQLFISYVDILQPWPVRQDLLRCHFFFECACPRCCRS
PPAPPRRAVRSARSKTGGSGSGTADPCSGGGYSSDTIYGDSRDREEMVSG
AWVCPKRACCGNGRVLPPLSTAGRGGAAGGEAQLGGTQLGVRPHGWG
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mRNA from alignment at Ecto-sp9_F_contig8774:2824..3728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8774.16951.1 ID=mRNA_Ecto-sp9_F_contig8774.16951.1|Name=mRNA_Ecto-sp9_F_contig8774.16951.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=905bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8774:2824..3728- (Ectocarpus species9 EcSCA_722f female)
GAGCTGTGCGTGGTTGCCGTGGAGGACGTTCCTGCCGGCTCCCAGCTGTT
CATCTCGTAAGGGGCGGTACATGTACCGGGTTTTCGTTGTGAGGAGGGGG
GCGTGAGTTTTGGGGGAGGATGTGGTCGGGTTTTTAGTCAGTTTATGGGC
TGTGGGATTGGTTGTGAGGGGGGGGGGGAGGAGGCGGGTGTAACATGGGT
GCGAGAGGGCGCTCCGAATTGTGTTTTGACCTCGGGGAGCTGTCCTAGGG
ATGAAAAATAGAAAAATAGAGCCCTCCTGCTTCCCACACAACGAGTCTCT
TGATTGTGCTGCCCTGTCTCGATTTTCTCTGCCCTGATATCTGTCTCAGC
GTCTCGCCACCATTCTCCAACGCCGGTTGTTTGCGGCGGGTTGAACTCCA
CCTTCACCACAGATTCTCTCCCTCGCTGTGCCCCCCCCCCCCCCCCCCCC
CTCTGTCGTAACCTTGCCTTCGTGTCCCTTGCGGACAACACACCCACACG
TAAAAATGCAAACGTATAGCTACGTGGACATCTTGCAGCCTTGGCCGGTG
AGGCAAGACCTCCTCCGCTGCCACTTTTTCTTCGAGTGCGCCTGCCCGCG
GTGCTGCCGCAGTCCCCCCGCGCCGCCAAGGAGAGCGGTCCGAAGCGCCA
GGAGCAAGACGGGGGGCAGTGGTAGCGGTACGGCGGACCCTTGCAGCGGG
GGTGGTTATTCCAGTGACACGATCTACGGAGATAGTCGCGACAGGGAGGA
GATGGTTTCCGGGGCGTGGGTGTGCCCCAAGAGAGCGTGCTGCGGCAACG
GGAGAGTGCTACCGCCGTTGTCGACGGCAGGGAGAGGCGGTGCCGCCGGT
GGCGAGGCACAGCTGGGAGGGACGCAGCTTGGAGTAAGGCCGCATGGATG
GGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8774:2824..3728-

>mRNA_Ecto-sp9_F_contig8774.16951.1 ID=mRNA_Ecto-sp9_F_contig8774.16951.1|Name=mRNA_Ecto-sp9_F_contig8774.16951.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8774:2824..3728- (Ectocarpus species9 EcSCA_722f female)
GAGCTGTGCGTGGTTGCCGTGGAGGACGTTCCTGCCGGCTCCCAGCTGTT
CATCTCGAGCTGTGCGTGGTTGCCGTGGAGGACGTTCCTGCCGGCTCCCA
GCTGTTCATCTCCTACGTGGACATCTTGCAGCCTTGGCCGGTGAGGCAAG
ACCTCCTCCGCTGCCACTTTTTCTTCGAGTGCGCCTGCCCGCGGTGCTGC
CGCAGTCCCCCCGCGCCGCCAAGGAGAGCGGTCCGAAGCGCCAGGAGCAA
GACGGGGGGCAGTGGTAGCGGTACGGCGGACCCTTGCAGCGGGGGTGGTT
ATTCCAGTGACACGATCTACGGAGATAGTCGCGACAGGGAGGAGATGGTT
TCCGGGGCGTGGGTGTGCCCCAAGAGAGCGTGCTGCGGCAACGGGAGAGT
GCTACCGCCGTTGTCGACGGCAGGGAGAGGCGGTGCCGCCGGTGGCGAGG
CACAGCTGGGAGGGACGCAGCTTGGAGTAAGGCCGCATGGATGGGGGCTA
CGTGGACATCTTGCAGCCTTGGCCGGTGAGGCAAGACCTCCTCCGCTGCC
ACTTTTTCTTCGAGTGCGCCTGCCCGCGGTGCTGCCGCAGTCCCCCCGCG
CCGCCAAGGAGAGCGGTCCGAAGCGCCAGGAGCAAGACGGGGGGCAGTGG
TAGCGGTACGGCGGACCCTTGCAGCGGGGGTGGTTATTCCAGTGACACGA
TCTACGGAGATAGTCGCGACAGGGAGGAGATGGTTTCCGGGGCGTGGGTG
TGCCCCAAGAGAGCGTGCTGCGGCAACGGGAGAGTGCTACCGCCGTTGTC
GACGGCAGGGAGAGGCGGTGCCGCCGGTGGCGAGGCACAGCTGGGAGGGA
CGCAGCTTGGAGTAAGGCCGCATGGATGGGGG
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