mRNA_Ecto-sp9_F_contig8774.16950.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8774.16950.1
Unique NamemRNA_Ecto-sp9_F_contig8774.16950.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8774.16950.1 vs.
Match: SET (and MYND domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR7_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 4.340e-47
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 1 
Query:    1 LPTGAIDRGTCVGEEGGDGIRGGRGSDXXXXXXXXXXXXXXXXXXXXXXXSFTTAVVSSECPLLATAIWEAILVEVLDRVLPLAGRHCETELHRARVAFAERVVGVLGLRRRSLVTLPGES 363
            L  GAIDRGTCVGEEGGDGIRGGRGSDXXXXXXXXXXXXXXXXXXXXXXXSFTTAVVSSECPLLATAIWEAILVEVLDRVLPLAGRHCETELHRARVAFAERVVGVLGLRR SLVTLPGES
Sbjct:  516 LSAGAIDRGTCVGEEGGDGIRGGRGSDXXXXXXXXXXXXXXXXXXXXXXXSFTTAVVSSECPLLATAIWEAILVEVLDRVLPLAGRHCETELHRARVAFAERVVGVLGLRRSSLVTLPGES 636
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BLAST of mRNA_Ecto-sp9_F_contig8774.16950.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ9_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 7.910e-34
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:  151 SFTTAVVSSECPLLATAIWEAILVEVLDRVLPLAGRHCETEL--HRARVAFAERVVGVLGLRRRSLVTLPGES 363
            SFTTA+VSSECPLLAT IWEAILVEVLDRVLPLAGRHCETE   HRARVAFAERVVGVLGLRR SLVTLPGES
Sbjct:   54 SFTTAMVSSECPLLATGIWEAILVEVLDRVLPLAGRHCETETEAHRARVAFAERVVGVLGLRRSSLVTLPGES 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8774.16950.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
SET4.340e-4797.52and MYND domain containing 3 n=1 Tax=Ectocarpus si... [more]
Uncharacterized7.910e-3491.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8774contigEcto-sp9_F_contig8774:433..1593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue1.1e-41
Seed eggNOG ortholog2880.D7FUR7
KEGG koko:K11426
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-19_004190.1
Exons2
Model size747
Cds size366
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8774.16950.1prot_Ecto-sp9_F_contig8774.16950.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8774 814..1593 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.3887026-UTR-Ecto-sp9_F_contig8774:432..8131622930926.3887026-UTR-Ecto-sp9_F_contig8774:432..813Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8774 433..813 -
1692278952.00381-UTR-Ecto-sp9_F_contig8774:432..8131692278952.00381-UTR-Ecto-sp9_F_contig8774:432..813Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8774 433..813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.4286675-CDS-Ecto-sp9_F_contig8774:813..9781622930926.4286675-CDS-Ecto-sp9_F_contig8774:813..978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8774 814..978 -
1692278952.0167577-CDS-Ecto-sp9_F_contig8774:813..9781692278952.0167577-CDS-Ecto-sp9_F_contig8774:813..978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8774 814..978 -
1622930926.4473007-CDS-Ecto-sp9_F_contig8774:1392..15931622930926.4473007-CDS-Ecto-sp9_F_contig8774:1392..1593Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8774 1393..1593 -
1692278952.0277028-CDS-Ecto-sp9_F_contig8774:1392..15931692278952.0277028-CDS-Ecto-sp9_F_contig8774:1392..1593Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8774 1393..1593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8774.16950.1

>prot_Ecto-sp9_F_contig8774.16950.1 ID=prot_Ecto-sp9_F_contig8774.16950.1|Name=mRNA_Ecto-sp9_F_contig8774.16950.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=122bp
LPTGAIDRGTCVGEEGGDGIRGGRGSDDNRGGGGRVSKRRRGGGDERDGG
SFTTAVVSSECPLLATAIWEAILVEVLDRVLPLAGRHCETELHRARVAFA
ERVVGVLGLRRRSLVTLPGES*
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mRNA from alignment at Ecto-sp9_F_contig8774:433..1593-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8774.16950.1 ID=mRNA_Ecto-sp9_F_contig8774.16950.1|Name=mRNA_Ecto-sp9_F_contig8774.16950.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1161bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8774:433..1593- (Ectocarpus species9 EcSCA_722f female)
TTGCCGACCGGGGCGATCGATAGAGGCACGTGCGTCGGCGAGGAGGGTGG
TGATGGTATTCGTGGCGGACGTGGAAGTGATGACAACCGTGGTGGTGGTG
GTCGCGTCAGCAAGCGCAGAAGGGGCGGCGGTGACGAGAGGGACGGTGGC
AGTTTCACGACTGCTGTGGTGTCTTCGGAATGCCCTCTCCTTGCTACCGC
GGTGAGTGCGTGATATTCGTCTTGTTTGTGGCACCGACCGCCCTAACGGG
GTGGCCGATCGTGTGACGCCATTTTTCGTGGGACCAACGATGTGGAGGGG
CTATTATAGTGTGCGTGAGCTCTTCAGATTTCTTGCAGGAGGTGTCCAGC
TGAGCTCCCTAAGCACGCACGTCCACTGCCGGTTTCGATTCTTCAACCCA
CAAACAGGAACACCCAAATACGTGGCATGTGCGTGTTGGCACAGTACTTG
AGAGTGTTTTGCAAGTGTTCAGCAGGCGTGCGGAAGAATTGCCCCCCTCC
TCCTAATCGAAAGAGACCCAATGGCCAGCCATCAAGATCCTACCACGGGC
AAACACCGTTAGCGATCCCGTACGTGCTCTTGATACTGCGGATCGTCCGT
TCTGATTGACTCCAGATTTGGGAGGCGATCCTCGTGGAGGTGCTGGACCG
CGTGCTCCCCTTAGCAGGGCGACACTGCGAGACAGAACTACACAGGGCGA
GGGTCGCTTTCGCCGAGCGGGTGGTTGGCGTGCTGGGGTTGCGTCGCAGG
AGCCTTGTGACCCTGCCTGGTGAATCATGAGCGAGGCTCTTAACCTTGCC
CAGGAAGACCTTCACATGCATCCCGTACGTATGGATGCCTCCGTACCGCT
CTTACTTTTTTGTCTGTGTCTTAGCCTTTTCAAAACGGCGCCTTTGACAT
CAACCTTGGACATGCGTTTTTATATTTCGGCCGTACAGTAGCACGCACCT
TCACGCCGAAGAACTGATTTGGTATCGGTCCTACCTCCGCTTGGTCGCAT
TCTCTTTGAGTCAGATCTGCATGGTCTGCAGTGTTCCAGTAAGCGTCGCG
GCTTTTGCGGAGTAGGAGAAGACCTTGGCGGGATTAGGATACCCCAGGTT
TGTTCTCGTTTGGAGGCATTTTTGGAGTCCCACCGTGGAAGGCTCGTGTG
TAGATCTTACA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8774:433..1593-

>mRNA_Ecto-sp9_F_contig8774.16950.1 ID=mRNA_Ecto-sp9_F_contig8774.16950.1|Name=mRNA_Ecto-sp9_F_contig8774.16950.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8774:433..1593- (Ectocarpus species9 EcSCA_722f female)
TTGCCGACCGGGGCGATCGATAGAGGCACGTGCGTCGGCGAGGAGGGTGG
TGATGGTATTCGTGGCGGACGTGGAAGTGATGACAACCGTGGTGGTGGTG
GTCGCGTCAGCAAGCGCAGAAGGGGCGGCGGTGACGAGAGGGACGGTGGC
AGTTTCACGACTGCTGTGGTGTCTTCGGAATGCCCTCTCCTTGCTACCGC
GTTGCCGACCGGGGCGATCGATAGAGGCACGTGCGTCGGCGAGGAGGGTG
GTGATGGTATTCGTGGCGGACGTGGAAGTGATGACAACCGTGGTGGTGGT
GGTCGCGTCAGCAAGCGCAGAAGGGGCGGCGGTGACGAGAGGGACGGTGG
CAGTTTCACGACTGCTGTGGTGTCTTCGGAATGCCCTCTCCTTGCTACCG
CGATTTGGGAGGCGATCCTCGTGGAGGTGCTGGACCGCGTGCTCCCCTTA
GCAGGGCGACACTGCGAGACAGAACTACACAGGGCGAGGGTCGCTTTCGC
CGAGCGGGTGGTTGGCGTGCTGGGGTTGCGTCGCAGGAGCCTTGTGACCC
TGCCTGGTGAATCATGAATTTGGGAGGCGATCCTCGTGGAGGTGCTGGAC
CGCGTGCTCCCCTTAGCAGGGCGACACTGCGAGACAGAACTACACAGGGC
GAGGGTCGCTTTCGCCGAGCGGGTGGTTGGCGTGCTGGGGTTGCGTCGCA
GGAGCCTTGTGACCCTGCCTGGTGAATCATGA
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