mRNA_Ecto-sp9_F_contig8772.16949.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8772.16949.1
Unique NamemRNA_Ecto-sp9_F_contig8772.16949.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: ABC1 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM30_ECTSI)

HSP 1 Score: 504 bits (1299), Expect = 3.750e-175
Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 1
Query:    1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGRMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWWWQRRKSFTDRDIG 771
            QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAP+ ETP RMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWWWQRRKSFTDRDIG
Sbjct:  353 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPAMETPERMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWWWQRRKSFTDRDIG 609          
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: ABC1 (family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM7_9STRA)

HSP 1 Score: 220 bits (561), Expect = 5.720e-64
Identity = 132/292 (45.21%), Postives = 165/292 (56.51%), Query Frame = 1
Query:    1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILS-----------------------------------HDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGRMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWWWQRRKSFTDRDIG 771
            QVVLLDHGMYRRL+PDFRL Y +LWKAF+TRDT LG++ AV LG+ P  YDALSL+LTWRP +T    G RITEEER  L  KYK ++S                                     ++N FLERLPRDMLFV+RTSDL+R LNKDLGGT++ RL ++ E+                S    G  ++ E        + L  + A R  +E  G+R P    L  P A VN+LVSSE G  +P   S WD A LR+ +W  DS +R+ WWW+  K+FT RDIG
Sbjct:  379 QVVLLDHGMYRRLEPDFRLAYCRLWKAFLTRDTKLGKQQAVILGLTPDEYDALSLVLTWRPATTKTPMGTRITEEERARLREKYKGVVSAXXXXXXXXXXXXXXXXAQAEXXXXXXXXXXXXXXXXAVNNFLERLPRDMLFVLRTSDLIRGLNKDLGGTSQQRLRLMGEAGAXXXXXXXXXXXXXSSA--CGSWAKRE-------GRKLYLKTALRLQMEAAGIRFPPPPQLVWPGAPVNKLVSSEMGYKSPALSSAWDLARLRLGLWIADSTMRVHWWWKGYKAFTTRDIG 661          
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1K6_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.240e-41
Identity = 94/244 (38.52%), Postives = 131/244 (53.69%), Query Frame = 1
Query:    1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGRMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWW 732
            Q+VLLDHGMYRRLD +FR TY +LWKA + RD  L +     LG++   Y+ LSL  T+R  ++    GQR+T EER+AL  KY+   + + +N FL  +PRDML+V R+++L+RS+N+ LGGT+R+RL V AE AV+G+++P                        VE S              K  L  P K  L  P A +N+ V+SE       GL       LR+ +W  D   RL+ W
Sbjct:   32 QLVLLDHGMYRRLDSEFRTTYCELWKAMIIRDNHLAKASLAKLGMDAKYYEPLSLWFTYRTPTSKKGVGQRLTIEERRALRKKYEKGATREEVNVFLRSMPRDMLYVSRSNNLIRSINRQLGGTSRERLKVFAECAVKGISLP------------------------VEQSLTA-----------KNQLSKPNK-NLERPEASLNQPVTSELVNVPSIGLFSLGIVKLRVVLWIYDVGFRLMEW 239          
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ90_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.490e-40
Identity = 94/244 (38.52%), Postives = 131/244 (53.69%), Query Frame = 1
Query:    1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGRMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWW 732
            Q+VLLDHGMYRRLD +FR TY +LWKA + RD  L +     LG++   Y+ LSL  T+R  ++    GQR+T EER+AL  KY+   + + +N FL  +PRDML+V R+++L+RS+N+ LGGT+R+RL V AE AV+G+++P                        VE S              K  L  P K  L  P A +N+ V+SE       GL       LR+ +W  D   RL+ W
Sbjct:  127 QLVLLDHGMYRRLDSEFRTTYCELWKAMIIRDNHLAKASLAKLGMDAKYYEPLSLWFTYRTPTSKKGVGQRLTIEERRALRKKYEKGATREEVNVFLRSMPRDMLYVSRSNNLIRSINRQLGGTSRERLKVFAECAVKGISLP------------------------VEQSLTA-----------KNQLSKPNK-NLERPEASLNQPVTSELVNVPSIGLFSLGIVKLRVVLWIYDVGFRLMEW 334          
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RKL7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.100e-37
Identity = 73/146 (50.00%), Postives = 105/146 (71.92%), Query Frame = 1
Query:    1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTT 438
            Q+V+LDHGMYRR +P+FR TY +LW++ +  D   G++ A+ LGV    YD LSLI T RP ++  + G+R+ + ER+ + A++K + + D +N FL+ LPRD+LFV+R +++VRS+N  LGGTTR R  V+ ESAVRGL IPN T
Sbjct:  414 QLVILDHGMYRRFEPEFRTTYCQLWQSLLMADIKHGKQAAIKLGVPSDGYDVLSLIFTHRPANSQTKIGKRMQKAEREKMRAQFKDVSAAD-INVFLQNLPRDLLFVLRCTNIVRSINLSLGGTTRGRFKVMGESAVRGLLIPNPT 558          
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: ABC1 (domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUZ7_VITBC)

HSP 1 Score: 146 bits (369), Expect = 1.850e-36
Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPT-STTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPN 432
            Q+V+LDHGMYRRL+P FR  YS+LWKA + +D  +G +  VDL ++   +D LSLILT+RPT S   + GQR+ EE+R+ +  K+K   + +++N FL+ LPRD+L++ RT+++VRSLN +LGGT+RDR  V+ +SA++GL + N
Sbjct:  371 QLVVLDHGMYRRLEPSFRHAYSRLWKALVMQDEHVGRQACVDLNLDEDAFDMLSLILTFRPTKSKFTKLGQRMHEEDRKVVKEKFKKTTA-EAINDFLKSLPRDILYIFRTTNIVRSLNLELGGTSRDRFRVMGQSAIQGLFLDN 514          
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: Hypothetical (protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IIF7_9EUKA)

HSP 1 Score: 142 bits (358), Expect = 2.790e-36
Identity = 81/159 (50.94%), Postives = 105/159 (66.04%), Query Frame = 1
Query:    1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGRM 477
            Q+VLLDHGMYRRL  +FR  Y +LW A + RD   G   A  LGVE   Y+ LSL+LT RP  +TA TG  ++  ERQA+ A+Y+   + + +N FL RLPRDMLFVMRT  LVRSLN+ LGGTTR R + ++ +A RG  +P+  AA + S    GR+
Sbjct:  217 QLVLLDHGMYRRLSANFRSEYCRLWMALLARDAREGRAAARALGVEADDYETLSLLLTHRPPDSTAPTGSNMSAAERQAVRARYRSYGAAE-VNTFLHRLPRDMLFVMRTWSLVRSLNRRLGGTTRQRFMYISAAAARGA-LPDALAAGSVSMGWIGRL 373          
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: ABC1 (domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FH32_9ALVE)

HSP 1 Score: 134 bits (338), Expect = 3.190e-32
Identity = 70/148 (47.30%), Postives = 102/148 (68.92%), Query Frame = 1
Query:    1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPT-STTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTA 441
            Q+VLLDHGMYRRL PDFR  Y +LW+A +T+D ++G   A+ LG++   ++ LSL+ T+R + S   R G R+ +E+RQ      +   + D +N FL  LPRD+L+V+R +++VRSLN DLGGT+R R  ++ E+AVRGL +PN  A
Sbjct:  397 QIVLLDHGMYRRLTPDFRKGYCQLWEALVTQDESVGREAAIRLGLDERGFELLSLVFTFRSSKSKRTRLGSRMHDEDRQRARDSIQGTTAGD-INEFLRGLPRDVLWVLRATNIVRSLNLDLGGTSRQRFRIMGEAAVRGLLLPNEAA 543          
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: Ubiquinone (biosynthesis protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FRR0_EMIHU)

HSP 1 Score: 129 bits (323), Expect = 2.050e-30
Identity = 91/247 (36.84%), Postives = 127/247 (51.42%), Query Frame = 1
Query:    1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVI----------------------------LSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTE----TPGRM------SREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVS 627
            Q+VLLDHG+YRRL  D+RL Y++LW A + +D A G   A  LGV P  Y+ L++ LT+RP  + A  G  ++  ER+A+  +Y  +                            L+   +NAFL RLPRDMLFVMRT  LVRSLN+ LGGTTR R + +A  A RG +    +A A P+       PG++       R     ++ + +  S    FR  +  EGL   A+LALG     V  L++
Sbjct:  351 QLVLLDHGLYRRLSEDYRLAYAQLWCALLAQDDAAGRAAASALGVPPDDYETLAIALTFRPPGSRAPLGSGMSATERRAIRERYASVGPAEADGMPRCASALSRLDLGSTSAQSRLNLGQVNAFLGRLPRDMLFVMRTWGLVRSLNRALGGTTRQRFVTMATYATRGAHRRRPSARAEPAAAGAAWLPGQLLRACAACRRRTALWLAAWRVWSAVLRFRARVAFEGLA--ARLALGEGGGAVEGLLA 595          
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: ABC1 (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W889_GLOUD)

HSP 1 Score: 126 bits (316), Expect = 1.090e-29
Identity = 69/139 (49.64%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRG 417
            Q+VLLDHG+YR LD DFR TY  LW+A + RDTAL E C+  L V       L L+ T+R  S+T      +TE E++ L    K  L   S+  FLE+LPRDMLFV RT++++RSLNKDLGG++R+R  V+ + AV G
Sbjct:  328 QLVLLDHGLYRELDDDFRKTYCDLWRAMLLRDTALLEDCSKRLNVG-AFAKYLPLLFTYRTISSTTPLASSMTEGEKKELTEDLKK-LQFSSVTDFLEQLPRDMLFVFRTNNMIRSLNKDLGGSSRERFSVMGKYAVEG 464          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ABC13.750e-17598.83domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
ABC15.720e-6445.21family-domain-containing protein n=1 Tax=Tribonema... [more]
Hypothetical2.240e-4138.52protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical2.490e-4038.52protein n=2 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical1.100e-3750.00protein n=1 Tax=labyrinthulid quahog parasite QPX ... [more]
ABC11.850e-3649.66domain-containing protein n=2 Tax=Vitrella brassic... [more]
Hypothetical2.790e-3650.94protein n=1 Tax=Calcidiscus leptoporus TaxID=12754... [more]
ABC13.190e-3247.30domain-containing protein n=1 Tax=Chromera velia C... [more]
Ubiquinone2.050e-3036.84biosynthesis protein n=1 Tax=Emiliania huxleyi Tax... [more]
ABC11.090e-2949.64domain-containing protein n=1 Tax=Globisporangium ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8772contigEcto-sp9_F_contig8772:3135..5740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score492.7
Seed ortholog evalue1e-136
Seed eggNOG ortholog2880.D7FM30
KEGG koko:K08869
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiB domain
Ec32 orthologEc-01_010460.1
Exons4
Model size774
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8772.16949.1prot_Ecto-sp9_F_contig8772.16949.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8772 3135..5716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.2845037-CDS-Ecto-sp9_F_contig8772:3134..33471622930926.2845037-CDS-Ecto-sp9_F_contig8772:3134..3347Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8772 3135..3347 -
1692278951.9499202-CDS-Ecto-sp9_F_contig8772:3134..33471692278951.9499202-CDS-Ecto-sp9_F_contig8772:3134..3347Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8772 3135..3347 -
1622930926.3016539-CDS-Ecto-sp9_F_contig8772:4162..43661622930926.3016539-CDS-Ecto-sp9_F_contig8772:4162..4366Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8772 4163..4366 -
1692278951.9620943-CDS-Ecto-sp9_F_contig8772:4162..43661692278951.9620943-CDS-Ecto-sp9_F_contig8772:4162..4366Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8772 4163..4366 -
1622930926.3202112-CDS-Ecto-sp9_F_contig8772:4938..50951622930926.3202112-CDS-Ecto-sp9_F_contig8772:4938..5095Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8772 4939..5095 -
1692278951.972111-CDS-Ecto-sp9_F_contig8772:4938..50951692278951.972111-CDS-Ecto-sp9_F_contig8772:4938..5095Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8772 4939..5095 -
1622930926.3334832-CDS-Ecto-sp9_F_contig8772:5540..57161622930926.3334832-CDS-Ecto-sp9_F_contig8772:5540..5716Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8772 5541..5716 -
1692278951.982961-CDS-Ecto-sp9_F_contig8772:5540..57161692278951.982961-CDS-Ecto-sp9_F_contig8772:5540..5716Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8772 5541..5716 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.3516595-UTR-Ecto-sp9_F_contig8772:5716..57401622930926.3516595-UTR-Ecto-sp9_F_contig8772:5716..5740Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8772 5717..5740 -
1692278951.9931693-UTR-Ecto-sp9_F_contig8772:5716..57401692278951.9931693-UTR-Ecto-sp9_F_contig8772:5716..5740Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8772 5717..5740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8772.16949.1

>prot_Ecto-sp9_F_contig8772.16949.1 ID=prot_Ecto-sp9_F_contig8772.16949.1|Name=mRNA_Ecto-sp9_F_contig8772.16949.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=250bp
MYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILT
WRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVM
RTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGR
MSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLV
SSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWWWQRRKSFTDRDIG*
back to top

mRNA from alignment at Ecto-sp9_F_contig8772:3135..5740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8772.16949.1 ID=mRNA_Ecto-sp9_F_contig8772.16949.1|Name=mRNA_Ecto-sp9_F_contig8772.16949.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2606bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8772:3135..5740- (Ectocarpus species9 EcSCA_722f female)
CAGGTAGTCCTCCTCGACCATGGCATGTACCGTCGCCTAGACCCAGACTT CCGCCTGACGTACTCCAAGCTTTGGAAGGCGTTCATGACGAGGGACACCG CGCTGGGGGAGCGCTGCGCCGTCGATCTCGGCGTGGAGCCCGGCCTCTAC GACGCACTGTCGCTCATCCTGACATGGCGGCCTACGTCCACGACGGCGCG GTGAGTTGAGCGAGTGGTGATGGGGCAGGCGGGAACGGGATGAGACTTGC AGCAGAGACTGACTAAGACGTTGTTAGAACGGGGTGAGACTCGCACTGAG AAAGGCGTTGTTGGAACGGGACGAGATTTGCAGAGAGAAAGGCGTTTGTT AGAACGGGATGAGACTCGCATTGAGAAAGACGTTGTTGGAACAGGATGAG ACTCGCGTTGAGAATGTTGGAGCGGGATGAGACTCGCACTGAGAAAGGCT TTGTTGGAGAGGGGAGGGGCGGTATCGACAATCCTTCGGTTACGGATCGC GTACGGTACGAGGCGCGCTGGCCGCGTGGCGCTTGACGTCCCTCCCTCAG GCGAAACGTCGGTGATAAGAGTGTGCTTTCCACGAGCCGGACTAACGCAA AATGTGGTCCGGTGTATCTGTGTGTGTGGTTCTCTCTGTCTGCAGAACCG GGCAACGAATAACGGAGGAGGAGCGACAGGCGCTGGTGGCCAAGTACAAG GTTATCTTGTCACACGATAGCCTCAACGCCTTCCTAGAGAGGCTCCCCAG AGATATGCTCTTCGTCATGCGCACCAGCGATCTTGTCCGGAGTCTGAACA AGGTGCGCGAGGGGCCGTGGTGGTGGTGGTGGTGGTGGTGTTGATGTCTG TGGGTTTTCCGTGACAAGCGTATTTCTACACCGCCGTCATCTGCCTCCTG CCCTCTTTTTGTGGCTTGATCTATACGACAAGGTTTACAGGTAACCAGGC CTGCGTAACGTTTTCGCCTTTTCATCCCCGTCTACCCCCCGCCCCGCCTC TAGAGGGATGCATGATCATTGCACAATATTCATGAAGGCAAGCTAATCGA GAGCACGCGACAAGAAAGGCAGTGATTTCGCCTTCCAGATGTGGCAGCAT GGTCACGTGTCCTCCAGTTTTGGTCGAGTCTTGACAGGGAGGGAACCGCC GAACGTGTCGAGGTCAAGTAAGGAATGAGCACACGCACGCCGTAGCCCCC ACCCCACCGTCACCTCTTCACTGCCACCCCCACACCCTTCACCGTCACCT CCACCGCATGGTCACCCCCATACTCCACTGTCACCCCCACCGCATCGTCA CCCCCACCTCACCATCACCCCTACCCCGCCCCAACTCCGCGCGGGCATCT CTCGCTCCAAAAATCACCACGCAGGACCTCGGAGGTACGACGAGGGATCG GCTCATCGTGCTGGCAGAGAGTGCCGTACGCGGTCTCAACATCCCCAACA CCACCGCTGCCGCCGCCCCCTCGACGGAAACCCCTGGAAGGATGTCTCGA GAAGAAGCCGAGGGTTTCGTGGAGAGCAGCAAGGCCCTCTCCGAGGAGGA GGCGTTCCGGGAGTTCTTGGAGAAAGAGGTAAATTTTGTTTTTTGTTCAC ACGGAGTTTCAAGAGCCAGATGCTGCTGTACTCTCCCCTTGCATTCTGCT GTTTTGCGGCGCACCAGCAGTAAGTTTGTGCCAATAGCACGCGACGGTGA ATGCACTCCGGCCACGAGGGGGTACAAGGATAGAATCACGCAAGTTGGTG CCTTGATTGGTGATGGCCTCTTGTTGTTGTTGTGATATTTCTTGGCCTCG CGTGTCGAGTGAGGGCGGTGGGATTTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCGCGCGCGCGCGCGCGCGCGCTCTCTGTAACATTCGAATCCCGTTT GTCCGACATGTCGCCCGCGCGACGTCTCACTACTGTATGGGGCCTCTTCT TCCGGTTGGTTCTTGTCGCTCGGTCCTTTTGTTTCCTCTTTGATTTTTCA CAATGTACCCTTTTGGGGGTAGTAGTTAACCTGTGACCATGGAGGACGTC CGCCTCAGTAGACCAGTACTACTGTACGTTGGGATATTAGAAGGTACCTG GTACTGAACAGAGATCGGAACGGCTTTTAATGTAGGTGCGGAGATGACAA CATCATCTCTGCTAACATGACGTCCGTTCTTGGTTTCGTTCCTCTCCGTC TCTCGTTGTGTGTCTCTCCCCCTCCCCTCTCCCTTTTATGTGCGTCTCTA ATCCTCTGCGTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTTCCTCTCTTTGTCTGTGCCTCTCTTTTCCCCCCCTCTCC TCTACCACCACCCTGTCCGACACACACAAAACGCTATACACAGGGGCTCC GTCACCCGGCGAAGCTCGCCCTCGGCAGCCCCCACGCCGGCGTTAACCGC CTAGTCTCCTCCGAGAGGGGCATGACGGCCCCCAGAGGTCTGTCTTGGTG GGACTGGGCAGACCTTCGAATCCGCATCTGGACCATCGACAGCGTGCTGA GGTTAGTGTGGTGGTGGCAACGGCGGAAGTCGTTCACCGACAGGGACATC GGATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8772:3135..5740-

>mRNA_Ecto-sp9_F_contig8772.16949.1 ID=mRNA_Ecto-sp9_F_contig8772.16949.1|Name=mRNA_Ecto-sp9_F_contig8772.16949.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1500bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8772:3135..5740- (Ectocarpus species9 EcSCA_722f female)
ATGTACCGTCGCCTAGACCCAGACTTCCGCCTGACGTACTCCAAGCTTTG
GAAGGCGTTCATGACGAGGGACACCGCGCTGGGGGAGCGCTGCGCCGTCG
ATCTCGGCGTGGAGCCCGGCCTCTACGACGCACTGTCGCTCATCCTGACA
TGGCGGCCTACGTCCACGACGGCGCGATGTACCGTCGCCTAGACCCAGAC
TTCCGCCTGACGTACTCCAAGCTTTGGAAGGCGTTCATGACGAGGGACAC
CGCGCTGGGGGAGCGCTGCGCCGTCGATCTCGGCGTGGAGCCCGGCCTCT
ACGACGCACTGTCGCTCATCCTGACATGGCGGCCTACGTCCACGACGGCG
CGAACCGGGCAACGAATAACGGAGGAGGAGCGACAGGCGCTGGTGGCCAA
GTACAAGGTTATCTTGTCACACGATAGCCTCAACGCCTTCCTAGAGAGGC
TCCCCAGAGATATGCTCTTCGTCATGCGCACCAGCGATCTTGTCCGGAGT
CTGAACAAGAACCGGGCAACGAATAACGGAGGAGGAGCGACAGGCGCTGG
TGGCCAAGTACAAGGTTATCTTGTCACACGATAGCCTCAACGCCTTCCTA
GAGAGGCTCCCCAGAGATATGCTCTTCGTCATGCGCACCAGCGATCTTGT
CCGGAGTCTGAACAAGGACCTCGGAGGTACGACGAGGGATCGGCTCATCG
TGCTGGCAGAGAGTGCCGTACGCGGTCTCAACATCCCCAACACCACCGCT
GCCGCCGCCCCCTCGACGGAAACCCCTGGAAGGATGTCTCGAGAAGAAGC
CGAGGGTTTCGTGGAGAGCAGCAAGGCCCTCTCCGAGGAGGAGGCGTTCC
GGGAGTTCTTGGAGAAAGAGGACCTCGGAGGTACGACGAGGGATCGGCTC
ATCGTGCTGGCAGAGAGTGCCGTACGCGGTCTCAACATCCCCAACACCAC
CGCTGCCGCCGCCCCCTCGACGGAAACCCCTGGAAGGATGTCTCGAGAAG
AAGCCGAGGGTTTCGTGGAGAGCAGCAAGGCCCTCTCCGAGGAGGAGGCG
TTCCGGGAGTTCTTGGAGAAAGAGGGGCTCCGTCACCCGGCGAAGCTCGC
CCTCGGCAGCCCCCACGCCGGCGTTAACCGCCTAGTCTCCTCCGAGAGGG
GCATGACGGCCCCCAGAGGTCTGTCTTGGTGGGACTGGGCAGACCTTCGA
ATCCGCATCTGGACCATCGACAGCGTGCTGAGGTTAGTGTGGTGGTGGCA
ACGGCGGAAGTCGTTCACCGACAGGGACATCGGATGAGGGCTCCGTCACC
CGGCGAAGCTCGCCCTCGGCAGCCCCCACGCCGGCGTTAACCGCCTAGTC
TCCTCCGAGAGGGGCATGACGGCCCCCAGAGGTCTGTCTTGGTGGGACTG
GGCAGACCTTCGAATCCGCATCTGGACCATCGACAGCGTGCTGAGGTTAG
TGTGGTGGTGGCAACGGCGGAAGTCGTTCACCGACAGGGACATCGGATGA
back to top