mRNA_Ecto-sp9_F_contig8772.16949.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: ABC1 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM30_ECTSI) HSP 1 Score: 504 bits (1299), Expect = 3.750e-175 Identity = 254/257 (98.83%), Postives = 255/257 (99.22%), Query Frame = 1
Query: 1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGRMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWWWQRRKSFTDRDIG 771
QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAP+ ETP RMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWWWQRRKSFTDRDIG
Sbjct: 353 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPAMETPERMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWWWQRRKSFTDRDIG 609
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: ABC1 (family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM7_9STRA) HSP 1 Score: 220 bits (561), Expect = 5.720e-64 Identity = 132/292 (45.21%), Postives = 165/292 (56.51%), Query Frame = 1
Query: 1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILS-----------------------------------HDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGRMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWWWQRRKSFTDRDIG 771
QVVLLDHGMYRRL+PDFRL Y +LWKAF+TRDT LG++ AV LG+ P YDALSL+LTWRP +T G RITEEER L KYK ++S ++N FLERLPRDMLFV+RTSDL+R LNKDLGGT++ RL ++ E+ S G ++ E + L + A R +E G+R P L P A VN+LVSSE G +P S WD A LR+ +W DS +R+ WWW+ K+FT RDIG
Sbjct: 379 QVVLLDHGMYRRLEPDFRLAYCRLWKAFLTRDTKLGKQQAVILGLTPDEYDALSLVLTWRPATTKTPMGTRITEEERARLREKYKGVVSAXXXXXXXXXXXXXXXXAQAEXXXXXXXXXXXXXXXXAVNNFLERLPRDMLFVLRTSDLIRGLNKDLGGTSQQRLRLMGEAGAXXXXXXXXXXXXXSSA--CGSWAKRE-------GRKLYLKTALRLQMEAAGIRFPPPPQLVWPGAPVNKLVSSEMGYKSPALSSAWDLARLRLGLWIADSTMRVHWWWKGYKAFTTRDIG 661
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1K6_9STRA) HSP 1 Score: 151 bits (381), Expect = 2.240e-41 Identity = 94/244 (38.52%), Postives = 131/244 (53.69%), Query Frame = 1
Query: 1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGRMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWW 732
Q+VLLDHGMYRRLD +FR TY +LWKA + RD L + LG++ Y+ LSL T+R ++ GQR+T EER+AL KY+ + + +N FL +PRDML+V R+++L+RS+N+ LGGT+R+RL V AE AV+G+++P VE S K L P K L P A +N+ V+SE GL LR+ +W D RL+ W
Sbjct: 32 QLVLLDHGMYRRLDSEFRTTYCELWKAMIIRDNHLAKASLAKLGMDAKYYEPLSLWFTYRTPTSKKGVGQRLTIEERRALRKKYEKGATREEVNVFLRSMPRDMLYVSRSNNLIRSINRQLGGTSRERLKVFAECAVKGISLP------------------------VEQSLTA-----------KNQLSKPNK-NLERPEASLNQPVTSELVNVPSIGLFSLGIVKLRVVLWIYDVGFRLMEW 239
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ90_9STRA) HSP 1 Score: 151 bits (381), Expect = 2.490e-40 Identity = 94/244 (38.52%), Postives = 131/244 (53.69%), Query Frame = 1
Query: 1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGRMSREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVSSERGMTAPRGLSWWDWADLRIRIWTIDSVLRLVWW 732
Q+VLLDHGMYRRLD +FR TY +LWKA + RD L + LG++ Y+ LSL T+R ++ GQR+T EER+AL KY+ + + +N FL +PRDML+V R+++L+RS+N+ LGGT+R+RL V AE AV+G+++P VE S K L P K L P A +N+ V+SE GL LR+ +W D RL+ W
Sbjct: 127 QLVLLDHGMYRRLDSEFRTTYCELWKAMIIRDNHLAKASLAKLGMDAKYYEPLSLWFTYRTPTSKKGVGQRLTIEERRALRKKYEKGATREEVNVFLRSMPRDMLYVSRSNNLIRSINRQLGGTSRERLKVFAECAVKGISLP------------------------VEQSLTA-----------KNQLSKPNK-NLERPEASLNQPVTSELVNVPSIGLFSLGIVKLRVVLWIYDVGFRLMEW 334
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RKL7_9STRA) HSP 1 Score: 149 bits (376), Expect = 1.100e-37 Identity = 73/146 (50.00%), Postives = 105/146 (71.92%), Query Frame = 1
Query: 1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTT 438
Q+V+LDHGMYRR +P+FR TY +LW++ + D G++ A+ LGV YD LSLI T RP ++ + G+R+ + ER+ + A++K + + D +N FL+ LPRD+LFV+R +++VRS+N LGGTTR R V+ ESAVRGL IPN T
Sbjct: 414 QLVILDHGMYRRFEPEFRTTYCQLWQSLLMADIKHGKQAAIKLGVPSDGYDVLSLIFTHRPANSQTKIGKRMQKAEREKMRAQFKDVSAAD-INVFLQNLPRDLLFVLRCTNIVRSINLSLGGTTRGRFKVMGESAVRGLLIPNPT 558
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: ABC1 (domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUZ7_VITBC) HSP 1 Score: 146 bits (369), Expect = 1.850e-36 Identity = 72/145 (49.66%), Postives = 108/145 (74.48%), Query Frame = 1
Query: 1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPT-STTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPN 432
Q+V+LDHGMYRRL+P FR YS+LWKA + +D +G + VDL ++ +D LSLILT+RPT S + GQR+ EE+R+ + K+K + +++N FL+ LPRD+L++ RT+++VRSLN +LGGT+RDR V+ +SA++GL + N
Sbjct: 371 QLVVLDHGMYRRLEPSFRHAYSRLWKALVMQDEHVGRQACVDLNLDEDAFDMLSLILTFRPTKSKFTKLGQRMHEEDRKVVKEKFKKTTA-EAINDFLKSLPRDILYIFRTTNIVRSLNLELGGTSRDRFRVMGQSAIQGLFLDN 514
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: Hypothetical (protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IIF7_9EUKA) HSP 1 Score: 142 bits (358), Expect = 2.790e-36 Identity = 81/159 (50.94%), Postives = 105/159 (66.04%), Query Frame = 1
Query: 1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTETPGRM 477
Q+VLLDHGMYRRL +FR Y +LW A + RD G A LGVE Y+ LSL+LT RP +TA TG ++ ERQA+ A+Y+ + + +N FL RLPRDMLFVMRT LVRSLN+ LGGTTR R + ++ +A RG +P+ AA + S GR+
Sbjct: 217 QLVLLDHGMYRRLSANFRSEYCRLWMALLARDAREGRAAARALGVEADDYETLSLLLTHRPPDSTAPTGSNMSAAERQAVRARYRSYGAAE-VNTFLHRLPRDMLFVMRTWSLVRSLNRRLGGTTRQRFMYISAAAARGA-LPDALAAGSVSMGWIGRL 373
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: ABC1 (domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FH32_9ALVE) HSP 1 Score: 134 bits (338), Expect = 3.190e-32 Identity = 70/148 (47.30%), Postives = 102/148 (68.92%), Query Frame = 1
Query: 1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPT-STTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTA 441
Q+VLLDHGMYRRL PDFR Y +LW+A +T+D ++G A+ LG++ ++ LSL+ T+R + S R G R+ +E+RQ + + D +N FL LPRD+L+V+R +++VRSLN DLGGT+R R ++ E+AVRGL +PN A
Sbjct: 397 QIVLLDHGMYRRLTPDFRKGYCQLWEALVTQDESVGREAAIRLGLDERGFELLSLVFTFRSSKSKRTRLGSRMHDEDRQRARDSIQGTTAGD-INEFLRGLPRDVLWVLRATNIVRSLNLDLGGTSRQRFRIMGEAAVRGLLLPNEAA 543
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: Ubiquinone (biosynthesis protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FRR0_EMIHU) HSP 1 Score: 129 bits (323), Expect = 2.050e-30 Identity = 91/247 (36.84%), Postives = 127/247 (51.42%), Query Frame = 1
Query: 1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVI----------------------------LSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRGLNIPNTTAAAAPSTE----TPGRM------SREEAEGFVESSKALSEEEAFREFLEKEGLRHPAKLALGSPHAGVNRLVS 627
Q+VLLDHG+YRRL D+RL Y++LW A + +D A G A LGV P Y+ L++ LT+RP + A G ++ ER+A+ +Y + L+ +NAFL RLPRDMLFVMRT LVRSLN+ LGGTTR R + +A A RG + +A A P+ PG++ R ++ + + S FR + EGL A+LALG V L++
Sbjct: 351 QLVLLDHGLYRRLSEDYRLAYAQLWCALLAQDDAAGRAAASALGVPPDDYETLAIALTFRPPGSRAPLGSGMSATERRAIRERYASVGPAEADGMPRCASALSRLDLGSTSAQSRLNLGQVNAFLGRLPRDMLFVMRTWGLVRSLNRALGGTTRQRFVTMATYATRGAHRRRPSARAEPAAAGAAWLPGQLLRACAACRRRTALWLAAWRVWSAVLRFRARVAFEGLA--ARLALGEGGGAVEGLLA 595
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Match: ABC1 (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W889_GLOUD) HSP 1 Score: 126 bits (316), Expect = 1.090e-29 Identity = 69/139 (49.64%), Postives = 91/139 (65.47%), Query Frame = 1
Query: 1 QVVLLDHGMYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTWRPTSTTARTGQRITEEERQALVAKYKVILSHDSLNAFLERLPRDMLFVMRTSDLVRSLNKDLGGTTRDRLIVLAESAVRG 417
Q+VLLDHG+YR LD DFR TY LW+A + RDTAL E C+ L V L L+ T+R S+T +TE E++ L K L S+ FLE+LPRDMLFV RT++++RSLNKDLGG++R+R V+ + AV G
Sbjct: 328 QLVLLDHGLYRELDDDFRKTYCDLWRAMLLRDTALLEDCSKRLNVG-AFAKYLPLLFTYRTISSTTPLASSMTEGEKKELTEDLKK-LQFSSVTDFLEQLPRDMLFVFRTNNMIRSLNKDLGGSSRERFSVMGKYAVEG 464 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8772.16949.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8772.16949.1 >prot_Ecto-sp9_F_contig8772.16949.1 ID=prot_Ecto-sp9_F_contig8772.16949.1|Name=mRNA_Ecto-sp9_F_contig8772.16949.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=250bp MYRRLDPDFRLTYSKLWKAFMTRDTALGERCAVDLGVEPGLYDALSLILTback to top mRNA from alignment at Ecto-sp9_F_contig8772:3135..5740- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8772.16949.1 ID=mRNA_Ecto-sp9_F_contig8772.16949.1|Name=mRNA_Ecto-sp9_F_contig8772.16949.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2606bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8772:3135..5740- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8772:3135..5740- >mRNA_Ecto-sp9_F_contig8772.16949.1 ID=mRNA_Ecto-sp9_F_contig8772.16949.1|Name=mRNA_Ecto-sp9_F_contig8772.16949.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1500bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8772:3135..5740- (Ectocarpus species9 EcSCA_722f female)back to top |