mRNA_Ecto-sp9_F_contig877.16946.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig877.16946.1
Unique NamemRNA_Ecto-sp9_F_contig877.16946.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig877.16946.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig877contigEcto-sp9_F_contig877:10104..10337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_003480.1
Exons1
Model size234
Cds size129
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.7658112-UTR-Ecto-sp9_F_contig877:10103..102081622930925.7658112-UTR-Ecto-sp9_F_contig877:10103..10208Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig877 10104..10208 -
1692278951.6819518-UTR-Ecto-sp9_F_contig877:10103..102081692278951.6819518-UTR-Ecto-sp9_F_contig877:10103..10208Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig877 10104..10208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.7789748-CDS-Ecto-sp9_F_contig877:10208..103371622930925.7789748-CDS-Ecto-sp9_F_contig877:10208..10337Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig877 10209..10337 -
1692278951.691068-CDS-Ecto-sp9_F_contig877:10208..103371692278951.691068-CDS-Ecto-sp9_F_contig877:10208..10337Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig877 10209..10337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig877.16946.1prot_Ecto-sp9_F_contig877.16946.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig877 10209..10337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig877.16946.1

>prot_Ecto-sp9_F_contig877.16946.1 ID=prot_Ecto-sp9_F_contig877.16946.1|Name=mRNA_Ecto-sp9_F_contig877.16946.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=43bp
MSASNQHKYREFAAAPPTPASACLPASVQSIIHSRLPRFLSP*
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mRNA from alignment at Ecto-sp9_F_contig877:10104..10337-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig877.16946.1 ID=mRNA_Ecto-sp9_F_contig877.16946.1|Name=mRNA_Ecto-sp9_F_contig877.16946.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp9_F_contig877:10104..10337- (Ectocarpus species9 EcSCA_722f female)
ATGAGCGCCTCAAATCAACACAAGTACAGAGAGTTTGCTGCAGCCCCGCC
GACCCCGGCCTCAGCGTGCCTTCCTGCCTCTGTGCAGTCCATCATTCATT
CACGTCTGCCTCGCTTTCTCAGCCCATAATCGCTCATCCAAGTTACAGGT
TCCTGCCGCCATGTCTGCTACGGCGGCCATACTGAAGAAAGTACGTTACA
ACGAAGAGGTAAGACTACACACGAAAGAAGTATG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig877:10104..10337-

>mRNA_Ecto-sp9_F_contig877.16946.1 ID=mRNA_Ecto-sp9_F_contig877.16946.1|Name=mRNA_Ecto-sp9_F_contig877.16946.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp9_F_contig877:10104..10337- (Ectocarpus species9 EcSCA_722f female)
ATGAGCGCCTCAAATCAACACAAGTACAGAGAGTTTGCTGCAGCCCCGCC
GACCCCGGCCTCAGCGTGCCTTCCTGCCTCTGTGCAGTCCATCATTCATT
CACGTCTGCCTCGCTTTCTCAGCCCATAAATGAGCGCCTCAAATCAACAC
AAGTACAGAGAGTTTGCTGCAGCCCCGCCGACCCCGGCCTCAGCGTGCCT
TCCTGCCTCTGTGCAGTCCATCATTCATTCACGTCTGCCTCGCTTTCTCA
GCCCATAA
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