mRNA_Ecto-sp9_F_contig8762.16942.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU60_ECTSI) HSP 1 Score: 288 bits (738), Expect = 1.070e-91 Identity = 144/153 (94.12%), Postives = 146/153 (95.42%), Query Frame = 2
Query: 2 SQVCTSSKRSSLWKRAQRALPSVMVMLGCQDVGRPLTLAQDSGHSKIYRQTPKALKRGAGFQQSGSHGRHSLVLVMSAMVVGVAESKLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHRI 460
S+VCT SKRSSLWKRAQ ALPS MVMLG QDVGRPLTLAQ GHSKIYRQTPKALKRGAGFQQSGSHGRH LVLV+SAMVVGVAESKLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHRI
Sbjct: 69 SEVCTGSKRSSLWKRAQPALPSEMVMLGSQDVGRPLTLAQAPGHSKIYRQTPKALKRGAGFQQSGSHGRHFLVLVISAMVVGVAESKLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHRI 221
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN8_9PHAE) HSP 1 Score: 235 bits (600), Expect = 2.230e-72 Identity = 116/130 (89.23%), Postives = 121/130 (93.08%), Query Frame = 2
Query: 71 MVMLGCQDVGRPLTLAQDSGHSKIYRQTPKALKRGAGFQQSGSHGRHSLVLVMSAMVVGVAESKLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHRI 460
MVMLGCQDVGR TLAQ SG+SK +RQTPKALKRGAGFQQSGSH RH LVLV SAMVVGVAESKLVEF+SGFKC+WYDLPHPVQFAVLLMMPALFFGIN IFGKLDK AYARLSRAVTAWMDEKRQ+HRI
Sbjct: 1 MVMLGCQDVGRSATLAQGSGYSKSFRQTPKALKRGAGFQQSGSHDRHFLVLVTSAMVVGVAESKLVEFRSGFKCIWYDLPHPVQFAVLLMMPALFFGINWIFGKLDKVAYARLSRAVTAWMDEKRQLHRI 130
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G956_ECTSI) HSP 1 Score: 124 bits (310), Expect = 1.110e-30 Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 2
Query: 227 MSAMVVGVAESK-LVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHRI 460
MS VVGVAES LV+ SGFKCMWY+L HPVQFAVLL+MPALF G+NR+FG LDKAAYARLSRAV+AWM+EKRQV +I
Sbjct: 1 MSVTVVGVAESNMLVDLPSGFKCMWYNLSHPVQFAVLLVMPALFLGVNRMFGMLDKAAYARLSRAVSAWMNEKRQVDQI 79
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ1_9PHAE) HSP 1 Score: 111 bits (278), Expect = 7.420e-26 Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 2
Query: 152 TPKALKRGAGFQQSGSHGRHSLVL-VMSAMVVGVAES-KLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHR 457
T +A KR ++S H LV VMSA V + ES +LVEF S F+CMW DLPHP QFA++ +M AL FG++RIFGKLD AAYARLSRAVTAW++E+R H+
Sbjct: 7 TREARKRPPALRRS-----HLLVATVMSATTVKIVESNRLVEFPSVFRCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRAVTAWINERRHAHQ 105
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G968_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 3.360e-21 Identity = 55/92 (59.78%), Postives = 65/92 (70.65%), Query Frame = 2
Query: 152 TPKALKRGAGFQQSGSHGRHSLVLV-MSAMVVGVAES-KLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAV 421
T KA KR G ++ H LV MSAM+VG+ ES +LVEF SG C W DLPHP QFAV+ +M AL FG+++IFGKLD AAYARLSRAV
Sbjct: 7 TRKARKRRPGLRRRS----HLLVATAMSAMIVGIVESNRLVEFPSGVMCTWNDLPHPAQFAVIFLMLALLFGVHQIFGKLDSAAYARLSRAV 94
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U9_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.020e-18 Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 2
Query: 5 QVCTSSKRSSLWKRAQRALPSVMVMLGCQDVGRPLTLAQDSGHSKIYRQTPKAL-KRGAGFQQSGSHGRHSLVLVMSAMVVGVAESKLV-EFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHR 457
++C K ++L + A+P V Q+ G +Q +S + R T + KR AGF R +L+ M+A+ G E +V + SG KC WY+L HP QFA+LL+M L +NR+F + DK Y RLSRA AWMDE R R
Sbjct: 78 EICLQRKWAALRINGKAAIP---VPRATQNPGN----SQRYQNSSVKRATRRITGKRAAGFWSGCFPCRRTLLATMAAINAGCVEGNVVVDMPSGLKCAWYNLTHPAQFAILLLMVGLVSFVNRLFNEADKVMYTRLSRATDAWMDEMRHTRR 223
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ82_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 4.750e-17 Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 2
Query: 191 SGSHGRHSLVLVMSAMVVGVAESK-LVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVH 454
+G GR +++ ++S V V E K L+EF SGF+CMW DLPH +QFA+LL+M + +G+NR+F K D+A Y RL+ A ++E+R H
Sbjct: 52 AGLGGRRAMLALISVAHVDVVEGKWLIEFPSGFRCMWNDLPHGLQFAILLLMLGILYGVNRLFDKADEAIYTRLTCATAGLLNERRLHH 140
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G973_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 7.550e-16 Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 2
Query: 206 RHSLVLVMSAMVVGVAES-KLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHR 457
R +L+ SA+ + + ES +L+EF SGFKC WY LPHPVQF +L++MPAL +G+NR+F +L+KA++A L TA E+++ R
Sbjct: 25 RFALLFATSALNMVLLESNRLLEFPSGFKCTWYGLPHPVQFTILILMPALLYGVNRLFDRLEKASHAGLCPHATAACVEEKEGGR 109
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J2_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.370e-15 Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 2
Query: 134 SKIYRQTPKAL-KRGAGFQQSGSHGRHSLVLVMSAMVVGVAE-SKLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHRI 460
S + R+ +++ KR G R L+ ++A+ G+ + S LV+ SGFKC WY+L HP QFA+L +M + + INR+F ++DK YARLS A AWMDE R ++
Sbjct: 102 SSLKREARRSIGKRTGGLTMMS---RRILLATIAALNAGLVDGSLLVDLPSGFKCAWYNLEHPAQFAILFLMVGVVYFINRLFNEVDKVMYARLSCATEAWMDEIRHSRQV 209
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G963_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 2.890e-15 Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 2
Query: 239 VVGVAESKLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARL 409
+V V ++L+EF S FKC WY LPHPVQF VL++MPAL +G+NR+F +L+KA++ARL
Sbjct: 1 MVLVENNRLLEFSSRFKCTWYGLPHPVQFMVLILMPALLYGVNRLFDRLEKASHARL 57 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8762.16942.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8762.16942.1 >prot_Ecto-sp9_F_contig8762.16942.1 ID=prot_Ecto-sp9_F_contig8762.16942.1|Name=mRNA_Ecto-sp9_F_contig8762.16942.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=131bp MVMLGCQDVGRPLTLAQDSGHSKIYRQTPKALKRGAGFQQSGSHGRHSLVback to top mRNA from alignment at Ecto-sp9_F_contig8762:659..3710- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8762.16942.1 ID=mRNA_Ecto-sp9_F_contig8762.16942.1|Name=mRNA_Ecto-sp9_F_contig8762.16942.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3052bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8762:659..3710- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8762:659..3710- >mRNA_Ecto-sp9_F_contig8762.16942.1 ID=mRNA_Ecto-sp9_F_contig8762.16942.1|Name=mRNA_Ecto-sp9_F_contig8762.16942.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8762:659..3710- (Ectocarpus species9 EcSCA_722f female)back to top |