mRNA_Ecto-sp9_F_contig8754.16937.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8754.16937.1
Unique NamemRNA_Ecto-sp9_F_contig8754.16937.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Match: Rhodanese (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J605_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 6.880e-130
Identity = 190/195 (97.44%), Postives = 192/195 (98.46%), Query Frame = 1
Query:    1 MPGVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTVLSMEGSKAFAAKHGLTVARVVPEMERVPTATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEKVETLSESRSLPVYCICRRGVDSKAAVLILAKKGFPNVMDVSGGLTEWARTVDREFPMY 585
            +PGVIGCLQATEALKVLG FGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTV SMEGSKAFAAKHGLTVARVVPEMERVPTATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEKVETLSE+RSLPVYCICRRGVDSKAAV ILAKKGFPNVMDVSGGLTEWARTVDREFPMY
Sbjct:  288 IPGVIGCLQATEALKVLGGFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTVRSMEGSKAFAAKHGLTVARVVPEMERVPTATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEKVETLSENRSLPVYCICRRGVDSKAAVSILAKKGFPNVMDVSGGLTEWARTVDREFPMY 482          
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Match: Adenylyltransferase (and sulfurtransferase MOCS3 homolog n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G6H5_9CRUS)

HSP 1 Score: 160 bits (404), Expect = 3.980e-43
Identity = 82/209 (39.23%), Postives = 126/209 (60.29%), Query Frame = 1
Query:    1 MPGVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPT---VLSMEGSKAFAAKHGLTVARVVPEMERVPTATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEKV-ETLSES----------RSLPVYCICRRGVDSKAAVLILAKKGFPNVMDVSGGLTEWARTVDREFPMY 585
            +PG+IG LQA E LK++G+FG PL  +L  +DG   SF ++RLR RS TC  CGD PT   VL+   +             V  + +  P+ +C+EY  +V  G  HVLLDVR  VQ+ +C+L +++N+P +Q++  + +V + + ++          + +PVY ICRRG+DS +A  +L  K   NV+++ GGL +W RT+D EFP+Y
Sbjct:  200 VPGIIGSLQAMEILKIVGQFGEPLSAKLLIFDGLSCSFRSMRLRSRSPTCDVCGDKPTIPNVLTDPTADLIDYNEFCGSCHVELDAKDCPSVSCEEYKSIVDQGDEHVLLDVRELVQYEICSLPNSINIPFAQMKERIGEVFKEIGQTDIDPLFGKPVQPVPVYLICRRGIDSLSAARLLLSKDAKNVINIRGGLLQWHRTIDSEFPLY 408          
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR13_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.200e-41
Identity = 89/202 (44.06%), Postives = 116/202 (57.43%), Query Frame = 1
Query:    7 GVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTVLSMEGSKAFAAKHGLTVARVVPEMERVPTATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQL-------EASMEKVETLSESRSLPVYCICRRGVDSK-AAVLILAKKGFPN-VMDVSGGLTEWARTVDREFPMY 585
            GVIG LQA E LKVLG FG+PL GRL TYDG DG+ Y + LRPR   C  CGD P + +ME S+ +  + GL     +   E +P+  C    D  A     V         F++C LD AVNVP + L       +A +EK+  L+     PVYC+CRRG+DS+ AA L+ A+ GFP  + DV+GGL  W   VD +FP+Y
Sbjct:  293 GVIGSLQALETLKVLGGFGTPLSGRLSTYDGADGTHYALALRPRRAACEVCGDAPVIKTMEDSRRWCEEQGLGGGACLRLPEDLPSIRCPFATDKCALDANFV---------FSICRLDGAVNVPYAALARAGGGGDAEIEKLRALAGDA--PVYCMCRRGIDSRRAAALLQARGGFPGGIYDVAGGLVRWREDVDPDFPLY 483          
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Match: Adenylyltransferase (and sulfurtransferase UBA4 n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HJ14_SPIPD)

HSP 1 Score: 155 bits (392), Expect = 5.440e-41
Identity = 83/211 (39.34%), Postives = 122/211 (57.82%), Query Frame = 1
Query:    1 MPGVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTVLSMEGSKAF--AAKHGLTVAR-VVPEMERVPTATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEKVETLSESRS-------------LPVYCICRRGVDSKAAVLILAKKGFPNVMDVSGGLTEWARTVDREFPMY 585
            +PG+IGCLQA E +K+    G+    ++  +D   G+F T++LR +S TCA CG NPT+  +     F  AA    T A+ ++P+ ER   +TC+EY+ V  G   H+LLDVR  VQF +C+L +++NVPL  LE  +  VE  +   +             LP+Y +CRRG DS+ AV +L + GF    D++GGL  WA  +D +FP Y
Sbjct:  247 VPGIIGCLQALEVIKIASGLGTSFSQKMLLFDATSGAFRTIKLRGQSPTCAICGKNPTITDLIDYVQFCGAAPTDKTPAQTLLPDDER---STCREYSSVRMGAWPHLLLDVRETVQFNICSLPNSLNVPLKDLERRLTDVEQAARQAAALESSAIAIAKDALPIYVVCRRGNDSQVAVQLLRQHGFLQAKDIAGGLERWASEIDPDFPTY 454          
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Match: Adenylyltransferase (and sulfurtransferase UBA4 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E610_9FUNG)

HSP 1 Score: 152 bits (384), Expect = 7.380e-40
Identity = 79/203 (38.92%), Postives = 114/203 (56.16%), Query Frame = 1
Query:    1 MPGVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTVLSMEGSKAFAAK---HGLTVARVVPEMERVPTATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEKVETLSE-----SRSLPVYCICRRGVDSKAAVLILAKKGFPNVMDVSGGLTEWARTVDREFPMY 585
            +PG+IGCLQA E +K+  + G+    +L  +D   GSF T++LR RS  CA CGD PT+  +     F            R++ E++R+   T +E  +       H+LLDVR  VQ+ +C+L  ++N+PL++LE  +  V   +      S +LP+Y ICRRG DS+ AV +L K GF    DV GGL  WAR +D  FP Y
Sbjct:  251 VPGIIGCLQALEVVKIAADIGAKFSQKLLIFDATFGSFRTIKLRGRSPACAVCGDEPTITELIDYVQFCGSGPSDKTPTQRILEEVDRI---TVEELGEFRKAAHSHLLLDVREKVQYDICSLPHSLNIPLAELEGRLPDVRAAARHGPNTSGTLPIYVICRRGNDSQLAVQMLQKTGFGQAKDVIGGLETWARDMDSSFPTY 450          
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M8B2_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.200e-39
Identity = 87/206 (42.23%), Postives = 121/206 (58.74%), Query Frame = 1
Query:    1 MPGVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTVLSMEGS-KAFAAKHGLTVARVVPEMERVP---TATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEKVETLSESRSLPVYCICRRGVDSKAAVLILAK-------KGFPNVMDVSGGLTEWARTVDREFPMY 585
            +PG+IG LQA EA+KV+   G+ +  RL  YD QD SF  ++  P  + CA C    T+ SM+ S ++     G +V  V+P  + +      +C +Y  V+  G+ HVLLDVRV  QF +C+LD +VN+PL +L + +E+VE LS    LPVYC+CRRG+ S  AV IL K       KG  +V ++SGGL  W   VD  FP Y
Sbjct:  406 VPGIIGTLQAVEAIKVVTGIGNVMHDRLMMYDSQDCSFLNIKKPPPKRNCAVCSSVATIKSMKDSAESLEQVRGPSVC-VLPVSDGLSPNQNISCDDYNAVLEEGKPHVLLDVRVTRQFEMCSLDGSVNLPLEELVSKLEQVEKLSNGE-LPVYCLCRRGIASAEAVKILQKAKDDDSAKGIHSVYNISGGLNSWVANVDSSFPSY 609          
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Match: Adenylyltransferase (and sulfurtransferase MOCS3 homolog n=2 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MSF0_HOMAM)

HSP 1 Score: 150 bits (378), Expect = 3.730e-39
Identity = 77/201 (38.31%), Postives = 117/201 (58.21%), Query Frame = 1
Query:    1 MPGVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTVLSMEGSKAFAAKHGLTVARVVPEMERVPTATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQL---EASMEKVETLSESRSLPVYCICRRGVDSKAAVLILAKKGFPN---VMDVSGGLTEWARTVDREFPMY 585
            +PG+IGC+QA EA+K++   GSPL  +L  +DG  GSF TVRLR    +C  CG+ P+++ +   + F        +R    +E+    T +EY  +V     +VL+DVR+ V+  +C+L + +N+PL+ +   E++    ETLS   +  VYC+CRRG DS+ AV  L      N   + D+ GGLT WA T+D  FP+Y
Sbjct:  228 VPGLIGCMQALEAIKIISGLGSPLSQKLLLFDGLQGSFRTVRLRGNKDSCEVCGETPSIVKLIDYEQFCGAPATDKSRNTTLLEKDKRVTVEEYKAIVDAKSPYVLIDVRLPVELEICSLPNCMNIPLTNICKAESTAAIKETLSSLGTKKVYCVCRRGNDSQLAVQQLQSALNHNDYQIKDIIGGLTAWAHTIDSTFPVY 428          
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Match: Adenylyltransferase (and sulfurtransferase MOCS3 homolog n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FVV0_PHATC)

HSP 1 Score: 148 bits (374), Expect = 1.190e-38
Identity = 86/203 (42.36%), Postives = 116/203 (57.14%), Query Frame = 1
Query:    1 MPGVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTVLSMEGSKA---FAAKHGLTVARVVPEMERVPTATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEKVETLSESRSLPVYCICRRGVDSKAAVLIL--AKKGFPNV---MDVSGGLTEWARTVDREFPMY 585
            +PG++G LQATE LKVL   G+ + G L  Y+  D SF  +   P+   C  CG + T+LSME S A    A     T+ R  P +      +C EY+ V      H+L+DVR  +QF +CAL++AV++PLS L   ++++E LS     PVYCICRRGVDS  A  IL  AK   PN+    +V+GGL  W + VD  FP Y
Sbjct:  219 VPGLVGILQATETLKVLTGSGTTMKGHLLMYNAMDCSFLKIVKPPKQTKCRVCGPDATILSMEASNASLLHAQGPMQTIDR--PSLPSESNISCIEYSRVREDKVPHILVDVRTKLQFEMCALEEAVHIPLSSLSQQLDQIEKLSGGTK-PVYCICRRGVDSVEATRILDAAKLSHPNIHSAKNVAGGLVSWRKEVDTSFPKY 418          
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Match: Os02g0525400 (protein (Fragment) n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q0E0T2_ORYSJ)

HSP 1 Score: 143 bits (360), Expect = 2.430e-38
Identity = 76/209 (36.36%), Postives = 119/209 (56.94%), Query Frame = 1
Query:    1 MPGVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTVLSMEGSKAFAAKHGLTVA---RVVPEMERVPTA---TCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEKVETL--------SESRSLPVYCICRRGVDSKAAVLILAKKGFPNVMDVSGGLTEWARTVDREFPMY 585
            +PGVIGCLQA EA+KV  + G PL GR+  +D        V++R  S  C  CG+N +  + +  + F  ++        +  P ++ +P +   TC+EY  +V  G RH+LLDVR    F + ++  ++N+PLS+LE  ++ +ET         S  +   +Y +CRRG DS+ AV +L +KGF +  D+ GGL  WA+ VD +FP+Y
Sbjct:   33 VPGVIGCLQALEAIKVATDVGEPLSGRMLLFDALSARIRIVKIRGSSTVCTVCGEN-SAFTQDDFQKFDYENFTQSPMSDKSAPSLDILPGSARVTCKEYKRLVDNGERHLLLDVRPAHHFQIASVSQSLNIPLSELEEKLQMLETSLKDTTDASSSDKPPSLYVVCRRGNDSQIAVQLLREKGFLSAKDIIGGLQSWAQDVDPDFPVY 240          
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A3S2NUS2_ORYJA)

HSP 1 Score: 141 bits (356), Expect = 3.280e-37
Identity = 79/212 (37.26%), Postives = 114/212 (53.77%), Query Frame = 1
Query:    1 MPGVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTCAACGDNPTVLSMEGSKAFAAKHGLTVARVVPEMERVPTATCQEYADVVAGGRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEK-VETLSESRS-----------LPVYCICRRGVDSKAAVLILAKKGFPNV-----MDVSGGLTEWARTVDREFPMY 585
            +PG++GCLQA E LK+    GS    +L  +D QDG F ++RLRP+  +CA CG++P+V  +   +AF         R +  + +    T Q+Y  ++     HVLLDVR  V+  +C+L  ++N+PLS LE    K ++ L E  S            PVY IC+ G DS+ AV +L K     V      D+SGGL  WA+T+D  FP Y
Sbjct:   77 VPGIMGCLQALEVLKIASGQGSSCGQQLLLFDAQDGRFRSIRLRPKLPSCAVCGESPSVTRLVDYEAFCGSAATDKCRKLNLLSKDQRITVQDYKSIIDRAGPHVLLDVRPLVEVEICSLPFSLNIPLSSLEEKKSKDIQLLQEKISQVKQQMAGDQQAPVYVICKLGNDSQKAVQLLEKMSGEEVDSVTVKDISGGLMAWAKTIDPAFPQY 288          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8754.16937.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rhodanese6.880e-13097.44domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Adenylyltransferase3.980e-4339.23and sulfurtransferase MOCS3 homolog n=2 Tax=Hirond... [more]
Rhodanese1.200e-4144.06domain-containing protein n=1 Tax=Tribonema minus ... [more]
Adenylyltransferase5.440e-4139.34and sulfurtransferase UBA4 n=3 Tax=Spizellomyces T... [more]
Adenylyltransferase7.380e-4038.92and sulfurtransferase UBA4 n=1 Tax=Powellomyces hi... [more]
Hypothetical3.200e-3942.23protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Adenylyltransferase3.730e-3938.31and sulfurtransferase MOCS3 homolog n=2 Tax=Homaru... [more]
Adenylyltransferase1.190e-3842.36and sulfurtransferase MOCS3 homolog n=2 Tax=Phaeod... [more]
Os02g05254002.430e-3836.36protein (Fragment) n=1 Tax=Oryza sativa subsp. jap... [more]
Rhodanese3.280e-3737.26domain-containing protein n=1 Tax=Oryzias javanicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8754contigEcto-sp9_F_contig8754:109..3148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.4
Seed ortholog evalue9.8e-106
Seed eggNOG ortholog2880.D7FNE1
Preferred namecnxF
KEGG rclassRC00043
KEGG koko:K11996,ko:K18469
KEGG ReactionR07459,R07461
KEGG Pathwayko04122,map04122
GOsGO:0000003,GO:0001403,GO:0001558,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004792,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007114,GO:0008033,GO:0008150,GO:0008152,GO:0008265,GO:0008641,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009451,GO:0009987,GO:0010467,GO:0010570,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0016783,GO:0016874,GO:0016877,GO:0018117,GO:0018130,GO:0018175,GO:0019008,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0019954,GO:0030447,GO:0032324,GO:0032446,GO:0032447,GO:0032505,GO:0032991,GO:0033554,GO:0034227,GO:0034470,GO:0034599,GO:0034641,GO:0034660,GO:0036211,GO:0036267,GO:0040007,GO:0040008,GO:0042221,GO:0042278,GO:0042292,GO:0043170,GO:0043412,GO:0043545,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051186,GO:0051188,GO:0051189,GO:0051301,GO:0051716,GO:0055086,GO:0065007,GO:0070566,GO:0070647,GO:0070733,GO:0070783,GO:0070784,GO:0070887,GO:0071566,GO:0071704,GO:0072521,GO:0090304,GO:0090407,GO:1900428,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:2000220
EggNOG free text desc.thiosulfate sulfurtransferase activity
EggNOG OGsCOG0476@1,KOG2017@2759
Ec32 ortholog descriptionmolybdopterin-synthase adenylyltransferase / sulfurtransferase
Ec32 orthologEc-22_001380.1
EC2.7.7.80,2.8.1.11
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size761
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8754.16937.1prot_Ecto-sp9_F_contig8754.16937.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8754 109..2975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.5548189-CDS-Ecto-sp9_F_contig8754:108..2451622930923.5548189-CDS-Ecto-sp9_F_contig8754:108..245Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8754 109..245 +
1692278950.685871-CDS-Ecto-sp9_F_contig8754:108..2451692278950.685871-CDS-Ecto-sp9_F_contig8754:108..245Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8754 109..245 +
1622930923.5677683-CDS-Ecto-sp9_F_contig8754:1143..12821622930923.5677683-CDS-Ecto-sp9_F_contig8754:1143..1282Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8754 1144..1282 +
1692278950.7073562-CDS-Ecto-sp9_F_contig8754:1143..12821692278950.7073562-CDS-Ecto-sp9_F_contig8754:1143..1282Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8754 1144..1282 +
1622930923.5829895-CDS-Ecto-sp9_F_contig8754:1891..20111622930923.5829895-CDS-Ecto-sp9_F_contig8754:1891..2011Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8754 1892..2011 +
1692278950.7174082-CDS-Ecto-sp9_F_contig8754:1891..20111692278950.7174082-CDS-Ecto-sp9_F_contig8754:1891..2011Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8754 1892..2011 +
1622930923.5991974-CDS-Ecto-sp9_F_contig8754:2783..29751622930923.5991974-CDS-Ecto-sp9_F_contig8754:2783..2975Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8754 2784..2975 +
1692278950.7304714-CDS-Ecto-sp9_F_contig8754:2783..29751692278950.7304714-CDS-Ecto-sp9_F_contig8754:2783..2975Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8754 2784..2975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.65927-UTR-Ecto-sp9_F_contig8754:2975..31481622930923.65927-UTR-Ecto-sp9_F_contig8754:2975..3148Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8754 2976..3148 +
1692278950.7403047-UTR-Ecto-sp9_F_contig8754:2975..31481692278950.7403047-UTR-Ecto-sp9_F_contig8754:2975..3148Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8754 2976..3148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8754.16937.1

>prot_Ecto-sp9_F_contig8754.16937.1 ID=prot_Ecto-sp9_F_contig8754.16937.1|Name=mRNA_Ecto-sp9_F_contig8754.16937.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=196bp
MPGVIGCLQATEALKVLGEFGSPLVGRLCTYDGQDGSFYTVRLRPRSKTC
AACGDNPTVLSMEGSKAFAAKHGLTVARVVPEMERVPTATCQEYADVVAG
GRRHVLLDVRVGVQFAVCALDDAVNVPLSQLEASMEKVETLSESRSLPVY
CICRRGVDSKAAVLILAKKGFPNVMDVSGGLTEWARTVDREFPMY*
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mRNA from alignment at Ecto-sp9_F_contig8754:109..3148+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8754.16937.1 ID=mRNA_Ecto-sp9_F_contig8754.16937.1|Name=mRNA_Ecto-sp9_F_contig8754.16937.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3040bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8754:109..3148+ (Ectocarpus species9 EcSCA_722f female)
ATGCCAGGCGTGATCGGTTGCCTGCAAGCCACGGAAGCGCTGAAGGTGCT GGGAGAGTTCGGCTCTCCCCTGGTGGGCAGGCTTTGCACGTATGATGGAC AGGACGGGTCGTTTTACACAGTGCGCTTGCGCCCGAGGTATGTCGGCTGC TGCTGAGCAAGAAAGCCTCCGTGGGTTAACAAAAAAGGCAAAGAAGTTGT GTGTCGGCACTGGAGAAAACACGTTCTCCTTGCTCACCGAGACTTGTCGT TTTATTTCTGCCTCGATAGTGTTTCGTTTCGGACAAGCAAGGCTATGCCG CCGCCATACTCTAGGAAAGCTGGGCGGCGACGCACGCACACACACCACTT ACGCAAACCCTTTTGACTTGAGCGTATTCGCGTTTTTCATCCCGCTACGA GACTGGTATATTTTCATTGGTCAGCCGGTTAGCGCGGTCGATGCTGCATG TAATTCAGAAAACACACACACCGACAGGCGCGAGGGAAGGGGTATTGGTT GCTCTGCCGTGCTGTGTTCAAGCTGCACCTTCTCCTTCCCTCCGCGTCCC CTGATTTTGGTTCGTCCTCTTCGGCATTCTGTCGGGCCGGGATGGCAGCG GGACTCTTTTTCTCCACAATCAGGGGTCCTGCTGTGCGGATGTACATCAT TGTTCTTGTCGCACGTAGATAAAAAATATCGTGGCTGTTCGTTCAAGTAT ACCAAGACAGGCTCGGATTGTTTTGCTCAAATATGCAGGAGTCTTGTCTG ATCCGCTGGCCTCTACACCGTGCTCTATCTCTCCCCCCCCCCCCCCCCCC CCCCCTCCCCCCCCCTCTCCTTCCCTCCCCCCCCCCCCCCCCCCCCCCCT TCCTTTCCTTTTTTTTCTTCCCCNNNNNNNNNNCGTATTGGTTTTCTCAA ATATGCAGGAGTCTTGTCTGATCCGCTGGCCTCTACACCGTGCTCTATCT CCCCCCCCCCCCCCCCCCCTCCCTTTCTCTCTCTTCTCTCTCTTCTCAAA CCACGTGCTTATCTTTATCGTCTTGCCTTTTTCAGGTCCAAGACGTGTGC GGCCTGCGGAGACAACCCCACCGTACTGAGCATGGAGGGAAGCAAGGCCT TCGCCGCCAAGCACGGCCTGACGGTGGCGAGGGTCGTACCAGAGATGGAG CGGGTGCCCACCGCTACCTGTCAGGTGCGTGAGAGTACGCTCGTAGGAAA ACATCCGCTGCAGCTCTTGTATGCACGGTGCCGAAATTTTCTTCTTCTTC TTCTTCTTATTTTTCTTCTGCTGCCTCTTTTCGTCTTCTGCTACCTCTTT TCTTCTTCTTCTGCCAACTCTTTTCCGCGCCAGTAGGTTCGTCCCCGGAA CCTACACCCCCAACGCTCGTGGGTTCGTGGGCATGTACCGTAGAATGTTT CCCCCCCTAAGTTTACCGCATTTGCAACGAACCTTGGCATTGGGAATGGC CGGGAGCATTTACCGCGCGTGCCACTTATCACTGCGAAGACACACACAGC AACAGGCGTGCTACAACACTCGTTTCGTTGTCCGACTGAATGGCCGATCG GTCAGCCGTGCCGTCGTCGACTCTCCCGAACCTTCCACCACGTTGCTGCT GACTAGCAATAGACCCATCCTGAACTGGAGCACTCTGCCCGAATACGTGG CCGTTTTTTCCCCCAACACTTGAAGATAGCGTCACCCAGAGGGTGCGCAA ACCACCAAATCTTACTTCAAGGTCCATCTCGACCCCGTTTCCCACCCACC CCCCCGCTCTTTGTCTCCTGTGCCCCCTTTCAGGAATACGCGGACGTTGT GGCCGGCGGGCGGAGGCATGTCCTGCTTGACGTGCGCGTCGGGGTGCAGT TCGCGGTGTGCGCCTTGGACGACGCTGTCAACGTGCCGCTGTCGCAGCTA GAGGTGAGGTGCGACGTGTGGTCTGGGACTGAGAAAAAGAAAATGGACAG GCAACACGCAAGACTTTCTTGTGTGGAACTTTCCTTTTTCAGATGTACAG TAGAGGTCGCTGTCTAGTGCCGGTATGTGCCCAGAAAATGCAGCGGCACT ATTCCGGACCGGCACTATTCAAGGTATTGAGAATGACTTGGAAATTCAGA GTGTACCGGCCGAAAACATGGGCATTATACCGGACACCGGCACTACACAG GGACCTCTACTGTACTGAATGTGACAGGAATCAGTCATCTCCATGTACTG TTGCGCGTACACGGGAACTTTAACTCTACTCGCAGCAGCAAAGAAGGCTT TGATTGAATGGCATGCAGGAGGGCTGAAAGGAACAGCAGAGAGACAGACG TGTGGCAGAGAGGGGCCAGGAAACATGAAGTTTCGACAGGAAAAACATGG CGTTTTGCAGGAAATTTCTTCTCTTGCGCCTTGTCTCCTTGGGCTGGATA ACGAGAGACCATGCTGCTTGTCGCTCGGTCCAGCTCAGGGCCAATCATAT CATTCCGATACTGGTGTAAGCACCTGCCTCGCCTCTTCCACTTGAAACCC CGTTCGGTCGAATCTCGACGGAATATGGCCGATCGACAGCGGGGTGGGTG GGCAGCGGGCTGAAATACTACTCTACTCGAAGACGCGTGGTTAATGCTCT AACGACTAAGGCATGCAAAACATTAATACCCCCCCCTTGCGCGTTTTCGC TCACATGTGCAAAATGTTATCGCAGGCATCCATGGAGAAAGTGGAAACGC TCAGTGAAAGTCGTTCTCTGCCAGTGTACTGCATCTGCCGCAGGGGGGTC GATTCCAAGGCCGCCGTTTTGATCCTCGCCAAGAAGGGTTTTCCTAACGT GATGGATGTTTCGGGGGGTCTCACGGAGTGGGCGAGGACGGTAGACCGTG AATTCCCGATGTACTAGTAGGTGCCGATGGTTTGAAAGATGCAACACGGG CGTCTTGCTGACGCTATTGTAGTAGTAGTGCTGTAGTGATCCCAGGTAGA TGAGAGTATTACCAATGGACCCCCCCCCCCCTTGAGTTTATTTTGTGGCG CCCTGCCCGGTAGGTAGGTAGGTGAGGTAGGTAGTCGTGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8754:109..3148+

>mRNA_Ecto-sp9_F_contig8754.16937.1 ID=mRNA_Ecto-sp9_F_contig8754.16937.1|Name=mRNA_Ecto-sp9_F_contig8754.16937.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1176bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8754:109..3148+ (Ectocarpus species9 EcSCA_722f female)
ATGCCAGGCGTGATCGGTTGCCTGCAAGCCACGGAAGCGCTGAAGGTGCT
GGGAGAGTTCGGCTCTCCCCTGGTGGGCAGGCTTTGCACGTATGATGGAC
AGGACGGGTCGTTTTACACAGTGCGCTTGCGCCCGAGATGCCAGGCGTGA
TCGGTTGCCTGCAAGCCACGGAAGCGCTGAAGGTGCTGGGAGAGTTCGGC
TCTCCCCTGGTGGGCAGGCTTTGCACGTATGATGGACAGGACGGGTCGTT
TTACACAGTGCGCTTGCGCCCGAGGTCCAAGACGTGTGCGGCCTGCGGAG
ACAACCCCACCGTACTGAGCATGGAGGGAAGCAAGGCCTTCGCCGCCAAG
CACGGCCTGACGGTGGCGAGGGTCGTACCAGAGATGGAGCGGGTGCCCAC
CGCTACCTGTCAGGTCCAAGACGTGTGCGGCCTGCGGAGACAACCCCACC
GTACTGAGCATGGAGGGAAGCAAGGCCTTCGCCGCCAAGCACGGCCTGAC
GGTGGCGAGGGTCGTACCAGAGATGGAGCGGGTGCCCACCGCTACCTGTC
AGGAATACGCGGACGTTGTGGCCGGCGGGCGGAGGCATGTCCTGCTTGAC
GTGCGCGTCGGGGTGCAGTTCGCGGTGTGCGCCTTGGACGACGCTGTCAA
CGTGCCGCTGTCGCAGCTAGAGGAATACGCGGACGTTGTGGCCGGCGGGC
GGAGGCATGTCCTGCTTGACGTGCGCGTCGGGGTGCAGTTCGCGGTGTGC
GCCTTGGACGACGCTGTCAACGTGCCGCTGTCGCAGCTAGAGGCATCCAT
GGAGAAAGTGGAAACGCTCAGTGAAAGTCGTTCTCTGCCAGTGTACTGCA
TCTGCCGCAGGGGGGTCGATTCCAAGGCCGCCGTTTTGATCCTCGCCAAG
AAGGGTTTTCCTAACGTGATGGATGTTTCGGGGGGTCTCACGGAGTGGGC
GAGGACGGTAGACCGTGAATTCCCGATGTACTAGGCATCCATGGAGAAAG
TGGAAACGCTCAGTGAAAGTCGTTCTCTGCCAGTGTACTGCATCTGCCGC
AGGGGGGTCGATTCCAAGGCCGCCGTTTTGATCCTCGCCAAGAAGGGTTT
TCCTAACGTGATGGATGTTTCGGGGGGTCTCACGGAGTGGGCGAGGACGG
TAGACCGTGAATTCCCGATGTACTAG
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